Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,862,827	C→T	R165C (CGC→TGC)	ygbK →	FliA‑regulated DUF1537 family protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,862,827	0	C	T	100.0%	196.0 / NA	53	R165C (CGC→TGC)	ygbK	FliA‑regulated DUF1537 family protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (25/28);  total (25/28)

GCCCTGCCGGTCAACGGACGTACGGTTTATCAGGGGTATTTGTTCGTAATGAATCAACTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCTATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGCGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGCCGTTCGTCAAGAGCTGGCTCGCTTACAGCAAGAGGGCTACCGCTACGCGGTGCTTGATGCGCTGACCGAACACCATCTGGAAATTCAGGGAGAAGCCT  >  NC_000913/2862680‑2862971                                                                                                                                                    |                                                                                                                                                 gCCCTGCCGGTCAACGGACGTACGGTTTATCAGGGGTATTTGTTCGTAATGAATCAACTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCt                                                                                                                                               <  1:166332/151‑1 (MQ=255)   ccTGCCGGTCAACGGACGTACGGTTTATCAGGGGTATTTGTTCGTAATGAATCAACTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGtgctgc                                                                                                                                             <  2:697845/151‑1 (MQ=255)    cTGCCGGTCAACGGACGTACGGTTTATCAGGGGTATTTGTTCGTAATGAATCAACTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTgcg                                                                                                                                            >  2:336110/1‑151 (MQ=255)       ccGGTCAACGGACGTACGGTTTATCAGGGGTATTTGTTCGTAATGAATCAACTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTgcggcg                                                                                                                                         <  2:840391/151‑1 (MQ=255)         ggTCAACGGACGTACGGTTTATCAGGGGTATTTGTTCGTAATGAATCAACTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGcgtc                                                                                                                                       <  1:29437/151‑1 (MQ=255)           tCAACGGACGTACGGTTTATCAGGGGTATTTGTTCGTAATGAATCAACTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGcgtcgt                                                                                                                                     >  2:752314/1‑151 (MQ=255)           tCAACGGACGTACGGTTTATCAGGGGTATTTGTTCGTAATGAATCAACTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGcgtcgt                                                                                                                                     >  2:531209/1‑151 (MQ=255)               cGGACGTACGGTTTATCAGGGGTATTTGTTCGTAATGAATCAACTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCg                                                                                                                                 <  1:702219/151‑1 (MQ=255)                  aCGTACGGTTTATCAGGGGTATTTGTTCGTAATGAATCAACTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGc                                                                                                                               >  2:846961/1‑150 (MQ=255)                     tACGGTTTATCAGGGGTATTTGTTCGTAATGAATCAACTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACAt                                                                                                                           >  2:412489/1‑151 (MQ=255)                     tACGGTTTATCAGGGGTATTTGTTCGTAATGAATCAACTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACAt                                                                                                                           >  2:647726/1‑151 (MQ=255)                      aCGGTTTATCAGGGGTATTTGTTCGTAATGAATCAACTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACAt                                                                                                                           <  1:299407/150‑1 (MQ=255)                        ggTTTATCAGGGGTATTTGTTCGTAATGAATCAACTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGtt                                                                                                                        >  2:700704/1‑151 (MQ=255)                         gTTTATCAGGGGTATTTGTTCGTAATGAATCAACTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGttt                                                                                                                       <  1:646618/151‑1 (MQ=255)                          tttATCAGGGGTATTTGTTCGTAATGAATCAACTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGtttt                                                                                                                      >  2:784639/1‑151 (MQ=255)                            tATCAGGGGTATTTGTTCGTAATGAATCAACTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTc                                                                                                                     <  2:164586/150‑1 (MQ=255)                            tATCAGGGGTATTTGTTCGTAATGAATCAACTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTc                                                                                                                     <  1:453355/150‑1 (MQ=255)                                    gTATTTGTTCGTAATGAATCAACTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGgt                                                                                                            <  2:723202/151‑1 (MQ=255)                                    gTATTTGTTCGTAATGAATCAACTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGgt                                                                                                            <  1:470421/151‑1 (MQ=255)                                      aTTTGTTCGTAATGAATCAACTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGgtgt                                                                                                          >  2:693621/1‑151 (MQ=255)                                          gTTCGTAATGAATCAACTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGa                                                                                                       <  2:317505/150‑1 (MQ=255)                                          gTTCGTAATGAATCAACTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGAt                                                                                                      >  2:81219/1‑151 (MQ=255)                                            tCGTAATGAATCAACTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATg                                                                                                     <  2:525770/150‑1 (MQ=255)                                             cGTAATGAATCAACTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGcc                                                                                                   <  2:828141/151‑1 (MQ=255)                                              gTAATGAATCAACTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGCCg                                                                                                  >  2:86463/1‑151 (MQ=255)                                                aaTGAATCAACTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGCCGt                                                                                                 <  2:519726/150‑1 (MQ=255)                                                   gAATCAACTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGCCGTTCGt                                                                                             <  1:214932/151‑1 (MQ=255)                                                       cAACTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGCCGTTCGTCa                                                                                           >  1:801285/1‑149 (MQ=255)                                                         aCTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGCCGTTCGTCAagag                                                                                       <  2:787807/151‑1 (MQ=255)                                                             ctgGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGCCGTTCGTCAAGAGCTgg                                                                                   >  2:730925/1‑151 (MQ=255)                                                                gCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGCCGTTCGTCAAGAGCTGGCTc                                                                                >  1:476197/1‑151 (MQ=255)                                                                        cGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGCCGTTCGTCAAGAGCTGGCTCGCTTAc                                                                          >  1:115829/1‑149 (MQ=255)                                                                          ggATGCGCCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTGCGGCACATGTTTTCGAACAAGGTGTGGATGCCGTTCGTCAAGAGCTGGCTCGCTTACAGCa                                                                      <  1:540060/151‑1 (MQ=255)                                                                              gcgcCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGCCGTTCGTCAAGAGCTGGCTCGCTTACAGCAagag                                                                  <  1:412457/151‑1 (MQ=255)                                                                              gcgcCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGCCGTTCGTCAAGAGCTGGCTCGCTTACAGCAaga                                                                   <  2:54307/150‑1 (MQ=255)                                                                               cgcCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGCCGTTCGTCAAGAGCTGGCTCGCTTACAGCAAGAgg                                                                 <  1:251830/151‑1 (MQ=255)                                                                                gcCATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGCCGTTCGTCAAGAGCTGGCTCGCTTACAGCAAGAggg                                                                >  2:196386/1‑151 (MQ=255)                                                                                 acATCACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGCTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGCCGTTCGTCAAGAGCTGGCTCGCTTACAGCAAGAGGGc                                                               >  1:536053/2‑151 (MQ=255)                                                                                     cACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGCCGTTCGTCAAGAGCTGGCTCGCTTACAGCAAGAGGGCTAc                                                            <  2:197245/150‑1 (MQ=255)                                                                                     cACCCGGTAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGCCGTTCGTCAAGAGCTGGCTCGCTTACAGCAAGAGGGCTAc                                                            <  1:733201/150‑1 (MQ=255)                                                                                            tAAATCCCATGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGCCGTTCGTCAAGAGCTGGCTCGCTTACAGCAAGAGGGCTACCGCTAcgc                                                    >  2:357207/1‑151 (MQ=255)                                                                                                     tGACCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGCCGTTCGTCAAGAGCTGGCTCGCTTACAGCAAGAGGGCTACCGCTACGCGGTGCTTg                                            >  1:632035/1‑150 (MQ=255)                                                                                                       aCCGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGCCGTTCGTCAAGAGCTGGCTCGCTTACAGCAAGAGGGCTACCGCTACGCGGTGCTTGATg                                         <  2:739555/151‑1 (MQ=255)                                                                                                        ccGACAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGCCGTTCGTCAAGAGCTGGCTCGCTTACAGCAAGAGGGCTACCGCTACGCGGTGCTTGATg                                         <  1:671139/150‑1 (MQ=255)                                                                                                           aCAGCCATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGCCGTTCGTCAAGAGCTGGCTCGCTTACAGCAAGAGGGCTACCGCTACGCGGTGCTTGATgcgc                                      >  1:716188/1‑150 (MQ=255)                                                                                                              gccaTCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGCGGATGCCGTTCGTCAAGAGCTGGCTCGCTTACAGCAAGAGGGCTACCGCTACGCGGTGCTTGATGCGCTGAc                                  >  2:407972/4‑151 (MQ=255)                                                                                                                caTCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGCCGTTCGTCAAGAGCTGGCTCGCTTACAGCAAGAGGGCTACCGCTACGCGGTGCTTGATGCGCTGACCg                                >  2:227107/2‑151 (MQ=255)                                                                                                                     tCCCCGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGCCGTTCGTCAAGAGCTGGCTCGCTTACAGCAAGAGGGCTACCGCTACGCGGTGCTTGATGCGCTGACCGa                               <  1:686080/147‑1 (MQ=255)                                                                                                                        ccGTCTGGTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGCCGTTCGTCAAGAGCTGGCTCGCTTACAGCAAGAGGGCTACCGCTACGCGGTGCTTGATGCGCTGACCGAACACCAt                        <  2:471022/151‑1 (MQ=255)                                                                                                                               gTTGAAGCGCAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGCCGTTCGTCAAGAGCTGGCTCGCTTACAGCAAGAGGGCTACCGCTACGCGGTGCTTGATGCGCTGACCGAACACCATCTGGaaa                 <  2:27316/151‑1 (MQ=255)                                                                                                                                       gcAATCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGCCGTTCGTCAAGAGCTGGCTCGCTTACAGCAAGAGGGCTACCGCTACGCGGTGCTTGATGCGCTGACCGAACACCATCTGGAAATTCAggg          >  2:242562/1‑150 (MQ=255)                                                                                                                                         aaTCCACAGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGCCGTTCGTCAAGAGCTGGCTCGCTTACAGCAAGAGGGCTACCGCTACGCGGTGCTTGATGCGCTGACCGAACACCATCTGGAAATTCAggg          >  2:132307/1‑148 (MQ=255)                                                                                                                                              acaGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGCCGTTCGTCAAGAGCTGGCTCGCTTACAGCAAGAGGGCTACCGCTACGCGGTGCTTGATGCGCTGACCGAACACCATCTGGAAATTCAGGGAGAAGCCt  >  2:456931/1‑151 (MQ=255)                                                                                                                                               caGGGTGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGCCGTTCGTCAAGAGCTGGCTCGCTTACAGCAAGAGGGCTACCGCTACGCGGTGCTTGATGCGCTGACCGAACACCATCTGGAAATTCAGGGAGAAGCCt  <  2:523358/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                 GCCCTGCCGGTCAACGGACGTACGGTTTATCAGGGGTATTTGTTCGTAATGAATCAACTGCTGGCCGAATCCGGGATGCGCCATCACCCGGTAAATCCCATGACCGACAGCTATCTTCCCCGTCTGGTTGAAGCGCAATCCACAGGGCGCTGCGGCGTCGTTTCGGCACATGTTTTCGAACAAGGTGTGGATGCCGTTCGTCAAGAGCTGGCTCGCTTACAGCAAGAGGGCTACCGCTACGCGGTGCTTGATGCGCTGACCGAACACCATCTGGAAATTCAGGGAGAAGCCT  >  NC_000913/2862680‑2862971

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑