Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 575,786 Δ3,850 bp IS5‑mediated [nmpC]ybcV [nmpC], essD, rrrD, rzpD, rzoD, borD, ybcV

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 574679–575790 579635 3846–4957 21 [19] [0] 61 insH1–ybcV insH1, nmpC, essD, rrrD, rzpD, rzoD, borD, ybcV

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 275149NA (NA)61 (1.230) 46/298 0.2 100% noncoding (1/1195 nt) IS5 repeat region
?NC_000913 579636 = 0 (0.000)intergenic (‑42/‑244) ybcV/ybcW DLP12 prophage; uncharacterized protein/DLP12 prophage; uncharacterized protein

AATATAATGTGAGACATTGTGACGTTTTAGTTCAGAATAAAACAATTCACAGTTTAAATCTTTTCGCACTTGATCGAATATTTCTTTAAAAATGGCAACCTGAGCCATTGGTAAAACCTTCCATGTGATACGAGGGCGCGTAGTTTGCATTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTGGAGGGAAATACAACCGACA  >  NC_000913/579487‑579783
                                                                                                                                                     |                                                                                                                                                   
gcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccatatgacaaacatgagctcatatcagggacttgttcgcaccttcct                                                                                                                                                     <  1:125809‑M2/1‑1 (MQ=255)
gcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt                                                                                                                                                    <  1:5219‑M2/2‑1 (MQ=255)
gcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt                                                                                                                                                    <  1:732232‑M2/2‑1 (MQ=255)
gcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt                                                                                                                                                    <  2:634663‑M2/2‑1 (MQ=255)
gcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct                                                                                                                                                     <  1:169595‑M2/1‑1 (MQ=255)
 cgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgcctcatgatgaaccctgttctatggctaaagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa                                                                                                                                                   <  1:300335‑M2/3‑1 (MQ=255)
 cgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt                                                                                                                                                    >  2:541442‑M2/149‑150 (MQ=255)
 cgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa                                                                                                                                                   <  2:653295‑M2/3‑1 (MQ=255)
 cgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa                                                                                                                                                   <  2:442601‑M2/3‑1 (MQ=255)
  gggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAt                                                                                                                                                  >  2:75670‑M2/148‑151 (MQ=255)
      caagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGtt                                                                                                                                              >  1:688015‑M2/144‑151 (MQ=255)
       aagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGttt                                                                                                                                             >  2:567648‑M2/143‑151 (MQ=255)
        agaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGtttt                                                                                                                                            >  2:226703‑M2/142‑151 (MQ=255)
        agaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacataatctcatatcagggacttgttcgcaccttccTTATCGtttt                                                                                                                                            >  2:525081‑M2/142‑151 (MQ=255)
         gaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGttttt                                                                                                                                           <  1:75639‑M2/11‑1 (MQ=255)
                 cttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCg                                                                                                                                       <  1:456758‑M2/15‑1 (MQ=255)
                  ttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTc                                                                                                                                   >  2:150255‑M2/132‑150 (MQ=255)
                     tctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATc                                                                                                                               >  1:588376‑M2/129‑151 (MQ=255)
                            tgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCACTCTGGTCt                                                                                                                         <  1:76524‑M2/29‑1 (MQ=255)
                             gacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTg                                                                                                                        >  2:340166‑M2/121‑150 (MQ=255)
                                   gcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCtt                                                                                                                 >  1:478593‑M2/115‑151 (MQ=255)
                                     ttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTtg                                                                                                               >  2:532302‑M2/113‑151 (MQ=255)
                                      tactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATc                                                                                                                                        <  1:495964‑M2/14‑1 (MQ=255)
                                      tactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATc                                                                                                                                        >  2:496016‑M2/112‑125 (MQ=255)
                                       actgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTtgtg                                                                                                             >  1:89727‑M2/111‑151 (MQ=255)
                                          gctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTgtgt                                                                                                            <  1:150573‑M2/42‑1 (MQ=255)
                                              aattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTttgtt                                                                                                      <  2:516101‑M2/48‑1 (MQ=255)
                                                ttcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGTTTCAATCTGGTCTGACCTCTTTGTGTTttgttg                                                                                                     <  2:527622‑M2/49‑1 (MQ=255)
                                                  cactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTtgatg                                                                                                  <  1:734147‑M2/52‑1 (MQ=255)
                                                   actgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTtgatga                                                                                                 <  1:92651‑M2/53‑1 (MQ=255)
                                                        cggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTa                                                                                             <  2:384031‑M2/57‑1 (MQ=255)
                                                             aaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCaa                                                                                       <  1:480511‑M2/63‑1 (MQ=255)
                                                             aaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCa                                                                                        >  2:407794‑M2/89‑150 (MQ=255)
                                                              aggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCaaa                                                                                      <  2:642899‑M2/64‑1 (MQ=255)
                                                              aggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCaaa                                                                                      <  1:29282‑M2/64‑1 (MQ=255)
                                                                  aagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAaatag                                                                                   <  2:152768‑M2/67‑2 (MQ=255)
                                                                  aagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATAtt                                                                                  <  2:79124‑M2/68‑1 (MQ=255)
                                                                    gttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAg                                                                                <  1:771428‑M2/70‑1 (MQ=255)
                                                                          gactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGt                                                                          >  2:375788‑M2/76‑151 (MQ=255)
                                                                              catgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGtttt                                                                       <  1:357963‑M2/79‑1 (MQ=255)
                                                                              catgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGttt                                                                        <  2:67927‑M2/78‑1 (MQ=255)
                                                                                  atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAAtt                                                                  <  1:430472‑M2/84‑1 (MQ=255)
                                                                                  atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAAtt                                                                  <  1:191365‑M2/84‑1 (MQ=255)
                                                                                      accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATa                                                              <  1:118909‑M2/88‑1 (MQ=255)
                                                                                      accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATa                                                              <  1:194632‑M2/88‑1 (MQ=255)
                                                                                       ccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAg                                                             <  1:84318‑M2/89‑1 (MQ=255)
                                                                                         ctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGt                                                            >  2:399478‑M2/61‑150 (MQ=255)
                                                                                           gttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTa                                                           <  2:525348‑M2/91‑1 (MQ=255)
                                                                                           gttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTAtt                                                         <  1:285431‑M2/93‑1 (MQ=255)
                                                                                                  ggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTATTGGTTGCg                                                  >  1:523247‑M2/52‑151 (MQ=255)
                                                                                                  ggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTATTGGTTGCg                                                  <  1:745547‑M2/100‑1 (MQ=255)
                                                                                                           tgacaaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTATTGGTTGCGTAACAAAg                                          >  1:635408‑M2/43‑150 (MQ=255)
                                                                                                              caaacatgatctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTATTGGTTGCGTAACAAAGTGCg                                      >  2:264495‑M2/40‑151 (MQ=255)
                                                                                                                        ctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTgg                            >  1:386922‑M2/30‑151 (MQ=255)
                                                                                                                        ctcatatcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTgg                            >  1:542248‑M2/30‑151 (MQ=255)
                                                                                                                              tcagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCt                      >  2:21647‑M2/24‑151 (MQ=255)
                                                                                                                               cagggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTg                     >  1:366574‑M2/23‑151 (MQ=255)
                                                                                                                                agggtcttgttcgcaccgtccTTATCGTTTTTATCGCTTCAATCGGGCCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTgg                    >  1:275464‑M2/22‑151 (MQ=255)
                                                                                                                                  ggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTgg                    >  1:270199‑M2/20‑149 (MQ=255)
                                                                                                                                  ggacttgttcgcaccttccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTGGAg                  <  2:93561‑M2/132‑1 (MQ=255)
                                                                                                                                                   ccTTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTGGAGGGAAATACAACCGACa  <  1:607083‑M2/148‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                   
AATATAATGTGAGACATTGTGACGTTTTAGTTCAGAATAAAACAATTCACAGTTTAAATCTTTTCGCACTTGATCGAATATTTCTTTAAAAATGGCAACCTGAGCCATTGGTAAAACCTTCCATGTGATACGAGGGCGCGTAGTTTGCATTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTGGAGGGAAATACAACCGACA  >  NC_000913/579487‑579783

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: