Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,246,757 C→T R36C (CGC→TGC)  exuR → hexuronate regulon transcriptional repressor; autorepressor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,246,7570CT100.0% 211.4 / NA 57R36C (CGC→TGC) exuRhexuronate regulon transcriptional repressor; autorepressor
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (31/26);  total (31/26)

ATAACAAATATAGTCTGCCGTATCATGCCTGGAGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAACGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACA  >  NC_000913/3246613‑3246904
                                                                                                                                                |                                                                                                                                                   
ataACAAATATAGTCTGCCGTATCATGCCTGGAGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCttt                                                                                                                                                <  2:745551/150‑1 (MQ=255)
ataACAAATATAGTCTGCCGTATCATGCCTGGAGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCttt                                                                                                                                                >  2:226746/1‑150 (MQ=255)
ataACAAATATAGTCTGCCGTATCATGCCTGGAGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCttt                                                                                                                                                >  2:463419/1‑150 (MQ=255)
  aaCAAATATAGTCTGCCGTATCATGCCTGGAGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTAtt                                                                                                                                             >  2:654552/1‑151 (MQ=255)
  aaCAAATATAGTCTGCCGTATCATGCCTGGAGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTAtt                                                                                                                                             >  1:432970/1‑151 (MQ=255)
    cAAATATAGTCGGCCGTATCATGCCTGGAGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGATGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGc                                                                                                                                           <  2:341063/151‑1 (MQ=255)
     aaaTATAGTCTGCCGTATCATGCCTGGAGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGcc                                                                                                                                          >  1:60243/1‑151 (MQ=255)
            gTCTGCCGTATCATGCCTGGAGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGaaa                                                                                                                                   <  1:94220/151‑1 (MQ=255)
                gCCGTATCATGCCTGGAGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGa                                                                                                                                >  1:570190/1‑150 (MQ=255)
                  cGTATCATGCCTGGAGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACg                                                                                                                             >  1:18802/1‑151 (MQ=255)
                    tATCATGCCTGGCGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTc                                                                                                                           >  2:399931/1‑151 (MQ=255)
                     aTCATGCCTGGAGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCa                                                                                                                          <  1:612867/151‑1 (MQ=255)
                        aTGCCTGGAGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGcc                                                                                                                       >  1:601906/1‑151 (MQ=255)
                           ccTGGAGCGCATATGGAAATCACTGAACCCCGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTa                                                                                                                    <  1:606805/151‑1 (MQ=255)
                           ccTGGAGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGt                                                                                                                     >  2:280548/1‑150 (MQ=255)
                              ggAGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTAc                                                                                                                   <  2:386887/149‑1 (MQ=255)
                                   gcATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGtt                                                                                                            <  2:469074/151‑1 (MQ=255)
                                    cATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTc                                                                                                           >  1:682243/1‑151 (MQ=255)
                                    cATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTc                                                                                                           >  1:394031/1‑151 (MQ=255)
                                    cATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTc                                                                                                           <  2:220819/151‑1 (MQ=255)
                                         ggAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGaa                                                                                                      <  2:774772/151‑1 (MQ=255)
                                             aTCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGcc                                                                                                   >  1:718991/1‑150 (MQ=255)
                                                 cTGGACCACGCCGTTTGTATCAACAACTTACCGCTGACCTGAAAGACCGCATCGAACACGCCGTCTATCTGGAGGGTGATATACTGCCTGGAGAATTATTTCTTGCCGATGAAAAGATCGTCAGCCGTACGGTAGTTCGTGAAGctt                                                                                                  <  1:444994/147‑3 (MQ=255)
                                                   gAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCcatcatc                                                                                             >  2:372381/1‑150 (MQ=255)
                                                   gAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCcatcatc                                                                                             <  2:276864/150‑1 (MQ=255)
                                                   gAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCcatcat                                                                                              <  2:751038/149‑1 (MQ=255)
                                                     aCCTCGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGATCGTCAGCCGTACGGTAGTTCGTGAAGCcatcatc                                                                                             <  1:364275/148‑1 (MQ=255)
                                                       cACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCt                                                                                        <  2:429053/151‑1 (MQ=255)
                                                          gCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTgg                                                                                      >  1:670653/1‑150 (MQ=255)
                                                            cGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAg                                                                                   <  1:253673/151‑1 (MQ=255)
                                                                 gTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGGGCGGGAAGCCAGCAGCATGCTGGAAGTTGa                                                                               <  2:346044/150‑1 (MQ=255)
                                                                   aTCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAgg                                                                            >  2:203095/1‑151 (MQ=255)
                                                                   aTCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAgg                                                                            <  2:470830/151‑1 (MQ=255)
                                                                   aTCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAgg                                                                            <  2:28368/151‑1 (MQ=255)
                                                                         aacTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGATAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCGATCATCATGCTGGCAGTTGAAGGCTATGt                                                                      >  1:263777/1‑151 (MQ=255)
                                                                                    gACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGt                                                            >  1:33150/1‑150 (MQ=255)
                                                                                       cTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTaa                                                          >  1:322030/1‑149 (MQ=255)
                                                                                       cTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTaa                                                          >  2:203067/1‑149 (MQ=255)
                                                                                                              cGTCTATCTGGTGGGTGATAAACTGCCTGAAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAACGGTTCAGGTATTCATGTGGttt                                   >  1:265187/1‑149 (MQ=255)
                                                                                                               gTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCa                                <  2:290923/151‑1 (MQ=255)
                                                                                                                      tggtggGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGcc                         >  1:431846/1‑151 (MQ=255)
                                                                                                                       ggtgggtgATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCa                            <  2:446887/147‑1 (MQ=255)
                                                                                                                               aTAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATca                <  1:239123/151‑1 (MQ=255)
                                                                                                                               aTAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATc                 >  2:575343/1‑150 (MQ=255)
                                                                                                                                tacaCTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAACGGTTCAGGTCTTCATGTGGTTTCCAACCAGCCGCGCCATc                 >  2:190789/4‑149 (MQ=255)
                                                                                                                                tAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATc                 >  2:654502/1‑149 (MQ=255)
                                                                                                                                 aaaCTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATcagc              >  2:577387/1‑151 (MQ=255)
                                                                                                                                  aaCTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATcagca             <  1:658904/151‑1 (MQ=255)
                                                                                                                                     tgcctgcAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAggc          >  2:203841/1‑151 (MQ=255)
                                                                                                                                     tgcctgcAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAggc          >  2:121038/1‑151 (MQ=255)
                                                                                                                                      gcctgcAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAggc          <  2:773889/150‑1 (MQ=255)
                                                                                                                                          gccgAATGCTTTATTGCCGATGAAAAGAATGTAAGCCGTACGGTAGTTCGTGACGCCATCATCATGCTGCAAGTTGAAGGCTATGTCGATGTGCGTAAGGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGTCt      <  1:392564/147‑1 (MQ=255)
                                                                                                                                          gcAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAggcggc       <  2:365887/149‑1 (MQ=255)
                                                                                                                                          gcAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTg     >  2:200414/1‑151 (MQ=255)
                                                                                                                                             gAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGAc   >  1:73968/1‑150 (MQ=255)
                                                                                                                                             gAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGAc   >  1:358469/1‑150 (MQ=255)
                                                                                                                                             gAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACa  <  1:195956/151‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                                   
ATAACAAATATAGTCTGCCGTATCATGCCTGGAGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAACGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCTGACA  >  NC_000913/3246613‑3246904

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: