Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 3,693,594 | A→G | L548P (CTG→CCG) | bcsA ← | cellulose synthase, catalytic subunit |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,693,594 | 0 | A | G | 98.2% | 195.6 / ‑3.9 | 56 | L548P (CTG→CCG) | bcsA | cellulose synthase, catalytic subunit |
Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (29/26); total (30/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 |
CCGTTTCGTAGATTTCACTCCAGAAAGAGTGGCGATATTTGCCCTGGATCTTGGAGTTGGTCAGGCTGGCATGGATCATATGCGGCAGCACGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCAGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACTTCAGCCCTTTACCGGTGAGCGGGTTATCGAGACGGAAGATTTGTACCATCCCGC > NC_000913/3693451‑3693741 | ccGTTTCGTAGATTTCACTCCAGAAAGAGTGGCGATATTTGCCCTGGATCTTGGAGTTGGTCAGGCTGGCATGGATCATATGCGGCAGCACGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGc > 1:78351/1‑151 (MQ=255) ccGTTTCGTAGATTTCACTCCAGAAAGAGTGGCGATATTTGCCCTGGATCTTGGAGTTGGTCAGGCTGGCATGGATCATATGCGGCAGCACGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGc > 1:838893/1‑151 (MQ=255) gTTTCGTAGATTTCACTCCAGAAAGAGTGGCGATATTTGCCCTGGATCTTGGAGTTGGTCAGGCTGGCATGGATCATATGCGGCAGCACGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGcc > 1:504670/1‑150 (MQ=255) ttCGTAGATTTCACTCCAGAAAGAGTGGCGATATTTGCCCTGGATCTTGGAGTTGGTCAGGCTGGCATGGATCATATGCGGCAGCACGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAgc > 1:536272/1‑151 (MQ=255) ttCGTAGATTTCACTCCAGAAAGAGTGGCGATATTTGCCCTGGATCTTGGAGTTGGTCAGGCTGGCATGGATCATATGCGGCAGCACGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAgc > 1:764960/1‑151 (MQ=255) aGATTTCACTCCAGAAAGAGTGGCGATATTTGCCCTGGATCTTGGAGTTGGTCAGGCTGGCATGGATCATATGCGGCAGCACGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGgcgc > 2:154993/1‑151 (MQ=255) aGATTTCACTCCAGAAAGAGTGGCGATATTTGCCCTGGATCTTGGAGTTGGTCAGGCTGGCATGGATCATATGCGGCAGCACGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGgcgc > 2:393267/1‑151 (MQ=255) ttCACTCCAGAAAGAGTGGCGATATTTGCCCTGGATCTTGGAGTTGGTCAGGCTGGCATGGATCATATGCGGCAGCACGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTc > 1:420096/1‑151 (MQ=255) ttCACTCCAGAAAGAGTGGCGATATTTGCCCTGGATCTTGGAGTTGGTCAGGCTGGCATGGATAATATGCGGCAGCACGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGt < 2:884194/150‑1 (MQ=255) tCCAGAAAGAGTGGCGATATTTGCCCTGGATCTTGGAGTTGGTCAGGCTGGCATGGATCATATGCGGCAGCACGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGa > 2:104993/1‑150 (MQ=255) cAGAAAGAGTGGCGATATTTGCCCTGGATCTTGGAGTTGGTCAGGCTGGCATGGATCATATGCGGCAGCACGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGa < 2:479208/151‑1 (MQ=255) aaGAGTGGCGATATTTGCCCTGGATCTTGGAGTTGGTAAGGCTGGCATGGATCATATGCGGCAGCACGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGAAGCGGGAACGCCAGCGGCGCAGTCAGGAAGAt > 1:682688/1‑148 (MQ=255) agTGGCGATATTTGCCCTGGATCTTGGAGTTGGTCAGGCTGGCATGGATCATATGCGGCAGCACGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCg > 2:782314/1‑151 (MQ=255) gTGGCGATATTTGCCCTGGATCTTGGAGTTGGTCAGGCTGGCATGGATCATATGCGGCAGCACGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGt < 2:907187/151‑1 (MQ=255) ggCGATATTTGCCCTGGATCTTGGAGTTGGTCAGGCTGGCATGGATCATATGCGGCAGCACGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTg < 1:457311/150‑1 (MQ=255) gCGATATTTGCCCTGGATCTTGGAGTTGGTCAGGCTGGCATGGATCATATGCGGCAGCACGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTgg > 2:597459/1‑150 (MQ=255) atTTGCCCTGGATCTTGGAGTTGGTCAGGCTGGCATGGATCATATGCGGCAGCACGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGcc > 1:610139/1‑151 (MQ=255) tttGCCCTGGATCTTGGAGTTGGTCAGGCTGGCATGGATCATATGCGGCAGCACGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGccc > 2:456854/1‑151 (MQ=255) gCCCTGGATCTTGGAGTTGGTCAGGCTGGCATGGATCATATGCGGCAGCACGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGAc < 1:903321/151‑1 (MQ=255) ggATCTTGGAGTTGGTCAGGCTGGCATGGATCATATGCGGCAGCACGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACaag < 1:370760/149‑1 (MQ=255) tGGAGTTGGTCAGGCTGGCATGGATCATATGCGGCAGCACGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGa < 2:408798/150‑1 (MQ=255) gTTGGTCAGGCTGGCATGGATCATATGCGGCAGCACGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCTGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATg < 2:331946/151‑1 (MQ=255) tGGTCAGGCTGGCGTGGATCATATGCGGCAGCACGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGAGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATgg < 2:559264/150‑1 (MQ=255) cATGGATCATATGCGGCAGCACGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAAc < 2:644159/150‑1 (MQ=255) cATGGATCATATGCGGCAGCACGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACa < 1:655225/151‑1 (MQ=255) cATGGATCATATGCGGCAGCACGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACa < 2:610090/151‑1 (MQ=255) aTGGATCATATGCGGCAGCACGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACAt > 2:837301/1‑151 (MQ=255) cGGCAGCACGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGc > 1:93964/1‑150 (MQ=255) gcaCGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACtt < 1:771242/151‑1 (MQ=255) gcaCGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACtt > 1:134285/1‑151 (MQ=255) gAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACTTCAGc > 1:210914/1‑151 (MQ=255) aaTAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACTTCAGcc > 2:189826/1‑151 (MQ=255) aaTAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACTTCAGcc < 2:379705/151‑1 (MQ=255) aTAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACTTCAGccc < 2:185123/151‑1 (MQ=255) gggCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACTTCAGCCCttt < 1:629923/151‑1 (MQ=255) gggCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACTTCAGCCCttt < 2:366198/151‑1 (MQ=255) ggCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACTTCAGCCCTTTa < 1:568687/151‑1 (MQ=255) ggCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACTTCAGCCCTTTa < 2:420051/151‑1 (MQ=255) gCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACTTCAGCCCTTTAc < 2:907250/151‑1 (MQ=255) cGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACTTCAGCCCTTTAcc > 2:115564/1‑151 (MQ=255) cGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACTTCAGCCCTTTAcc > 1:827857/1‑151 (MQ=255) cGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACTTCAGCCCTTTAcc > 1:636297/1‑151 (MQ=255) tcatcaACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACTTCAGCCCTTTACCGGt > 1:331888/1‑151 (MQ=255) catcaACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACTTCAGCCCTTTACCGGTg < 2:343800/151‑1 (MQ=255) aaCGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACTTCAGCCCTTTACCGGTGAGCg < 1:637744/151‑1 (MQ=255) aaCGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACTTCAGCCCTTTACCGGTGAGCg > 2:202267/1‑151 (MQ=255) aaCGCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACTTCAGCCCTTTACCGGTGAGCg > 1:381483/1‑151 (MQ=255) gCTGGCGCATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACTTCAGCCCTTTACCGGTGAGCGGGt < 1:735618/151‑1 (MQ=255) tGGCGCATAGATGATGTAGGCATGAAGCAGCAGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACTTCAGCCCTTTACCGGTGAGCGGGtt > 1:880630/1‑150 (MQ=255) gcgcATAGATGATGTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACTTCAGCCCTTTACCGGTGAGCGGGTTATc > 2:798844/1‑151 (MQ=255) gatgTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACTTCAGCCCTTTACCGGTGAGCGGGTTATCGAGACGGa > 2:713009/1‑149 (MQ=255) gatgTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACTTCAGCCCTTTACCGGTGAGCGGGTTATCGAGACGGAAg < 2:406534/151‑1 (MQ=255) gTAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACTTCAGCCCTTTACCGGTGAGCGGGTTATCGAGACGGAAGAtt < 2:27159/151‑1 (MQ=255) tAGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACTTCAGCCCTTTACCGGTGAGCGGGTTATCGAGACGGAAGAttt > 1:250766/1‑151 (MQ=255) aGGCATGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACTTCAGCCCTTTACCGGTGAGCGGGTTATCGAGACGGAAGATTTg < 1:308348/151‑1 (MQ=255) tGAAGCAGCGGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACTTCAGCCCTTTACCGGTGAGCGGGTTATCGAGACGGAAGATTTGTAcc > 1:344191/1‑150 (MQ=255) cagcggGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACTTCAGCCCTTTACCGGTGAGCGGGTTATCGAGACGGAAGATTTGTACCATCCcg > 1:845048/1‑151 (MQ=255) agcggGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACTTCAGCCCTTTACCGGTGAGCGGGTTATCGAGACGGAAGATTTGTACCATCCcgc > 2:501457/1‑151 (MQ=255) | CCGTTTCGTAGATTTCACTCCAGAAAGAGTGGCGATATTTGCCCTGGATCTTGGAGTTGGTCAGGCTGGCATGGATCATATGCGGCAGCACGAATAGGGCGATCATCAACGCTGGCGCATAGATGATGTAGGCATGAAGCAGCAGGAACGCCAGCGGCGCAGTCAGGAAGATCAGCCGTGGAATGCCCGACAAGAAGTGGAACATGGCGTTGACGTAACATAGCCGCTGAGCAAACTTCAGCCCTTTACCGGTGAGCGGGTTATCGAGACGGAAGATTTGTACCATCCCGC > NC_000913/3693451‑3693741 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |