Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,412,534	T→C	E234E (GAA→GAG)	intR ←	Rac prophage; integrase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,412,534	0	T	C	100.0%	217.4 / NA	61	E234E (GAA→GAG)	intR	Rac prophage; integrase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (33/28);  total (33/28)

TTCAAGAGCAGGCTGCAGTAGTGTTACTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGTTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGCATTGAATTCTGTTTTAGATAACGGATCAGGCTTTATTCTGTTTCGCTGTAATTTTTTTACTCCTTCAAAT  >  NC_000913/1412390‑1412681                                                                                                                                                 |                                                                                                                                                    ttCAAGAGCAGGCTGCAGTAGTGTTACTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCg                                                                                                                                               >  1:206143/1‑151 (MQ=255)  tCAAGAGCAGGCTGCAGTAGTGTTACTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGt                                                                                                                                              >  2:686067/1‑151 (MQ=255)    aaGAGCAGGCTGCAGTAGTGTTACTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTg                                                                                                                                             >  2:345053/1‑150 (MQ=255)      gagCAGGCTGCAGTAGTGTTACTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACg                                                                                                                                          <  2:773175/151‑1 (MQ=255)       agCAGGCTGCAGTAGTGTTACTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACg                                                                                                                                          >  1:532552/1‑150 (MQ=255)       agCAGGCTGCAGTAGTGTTACTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACg                                                                                                                                          >  1:666077/1‑150 (MQ=255)               gCAGTAGTGTTACTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTg                                                                                                                                  >  1:52014/1‑150 (MQ=255)                 agtagtGTTACTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGt                                                                                                                               >  1:799442/1‑151 (MQ=255)                  gtagtGTTACTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGt                                                                                                                               >  2:2824/1‑150 (MQ=255)                     gtgtTACTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAAc                                                                                                                           <  1:595127/151‑1 (MQ=255)                       gtTACTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACg                                                                                                                          <  2:203329/150‑1 (MQ=255)                        ttACTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGc                                                                                                                        >  2:811696/1‑151 (MQ=255)                         tACTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGc                                                                                                                        <  2:537982/150‑1 (MQ=255)                             gTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCaaa                                                                                                                     <  2:624484/149‑1 (MQ=255)                               tCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTc                                                                                                                 >  2:620306/1‑151 (MQ=255)                                cGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTcc                                                                                                                <  2:181681/151‑1 (MQ=255)                                cGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTcc                                                                                                                >  2:428652/1‑151 (MQ=255)                                  gATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCca                                                                                                               <  1:283694/150‑1 (MQ=255)                                     cccGGCATTTGTTTTTGGGGTACCGAACATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTACcacac                                                                                                            <  2:62945/150‑2 (MQ=255)                                        ggCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTc                                                                                                        <  1:646959/151‑1 (MQ=255)                                          cATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTg                                                                                                      <  2:393929/151‑1 (MQ=255)                                               gTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGctct                                                                                                 >  2:158673/1‑151 (MQ=255)                                                  tttGGGGGACCGAACATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGt                                                                                               <  2:359938/150‑1 (MQ=255)                                                       gggACCGAACATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCtttt                                                                                         <  2:874884/151‑1 (MQ=255)                                                        ggACCGAACATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACTAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCttttt                                                                                        <  2:341221/151‑1 (MQ=255)                                                        ggACCGAACATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCttttt                                                                                        <  2:664810/151‑1 (MQ=255)                                                          aCCGAACATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTc                                                                                       >  1:144766/1‑150 (MQ=255)                                                            cGAACATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACt                                                                                    >  1:213513/1‑151 (MQ=255)                                                               aCATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTc                                                                                 <  2:553687/151‑1 (MQ=255)                                                                     cAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTa                                                                            >  2:13764/1‑150 (MQ=255)                                                                       aGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATg                                                                         <  1:162366/151‑1 (MQ=255)                                                                        gTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGc                                                                        <  1:286341/151‑1 (MQ=255)                                                                          aTCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGCa                                                                       <  1:537947/150‑1 (MQ=255)                                                                                aGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGCATTGAAtt                                                                >  2:823044/1‑151 (MQ=255)                                                                                   tttCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGCATTGAATTCTg                                                             >  1:685472/1‑151 (MQ=255)                                                                                    ttcttcTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGCATTGAATTCTg                                                             <  2:853931/150‑1 (MQ=255)                                                                                      cttctGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGCATTGAATTCTGttt                                                          >  2:75023/1‑151 (MQ=255)                                                                                         ctGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGCATTGAATTCTGtttt                                                         >  1:551042/1‑149 (MQ=255)                                                                                          tGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGCATTGAATTCTGtttt                                                         >  2:110311/1‑148 (MQ=255)                                                                                           gACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGCATTGAATTCTGtttt                                                         >  2:606791/1‑147 (MQ=255)                                                                                           gACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGCATTGAATTCTGTTTTa                                                        <  2:439847/148‑1 (MQ=255)                                                                                               ttCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGCATTGAATTCTGTTTTAGATAACg                                                 >  1:258804/1‑151 (MQ=255)                                                                                                tCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGCATTGAATTCTGTTTTAGATAACg                                                 <  1:823111/150‑1 (MQ=255)                                                                                                     aTTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGCATTGAATTCTGTTTTAGATAACGGATc                                             >  1:152974/1‑149 (MQ=255)                                                                                                      ttCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGCATTGAATTCTGTTTTAGATAACGGATCAgg                                          >  1:882261/1‑151 (MQ=255)                                                                                                      ttCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGCATTGAATTCTGTTTTAGATAACGGATCAgg                                          >  1:8454/1‑151 (MQ=255)                                                                                                             ttCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCCTTTTCACTTTCCATTAATGCATTGAATTCTGTTTTAGATAACGGATCAGGCTTTAt                                    <  1:428698/150‑1 (MQ=255)                                                                                                               cGAGATCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGCATTGAATTCTGTTTTAGATAACGGATCAGGCTTTATTCt                                 <  1:708432/151‑1 (MQ=255)                                                                                                                gagaTCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGCATTGAATTCTGTTTTAGATAACGGATCAGGCTTTATTCTg                                >  1:319147/1‑151 (MQ=255)                                                                                                                  gaTCCACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGCATTGAATTCTGTTTTAGATAACGGATCAGGCTTTATTCTGtt                              >  1:693632/1‑151 (MQ=255)                                                                                                                     ccACATCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGCATTGAATTCTGTTTTAGATAACGGATCAGGCTTTATTCTGTTTCg                           <  1:525318/151‑1 (MQ=255)                                                                                                                      cacaTCCTCCCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGCATTGAATTCTGTTTTAGATAACGGATCAGGCTTTATTCTGTTTCGc                          >  1:173325/1‑151 (MQ=255)                                                                                                                          tcctccCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGCATTGAATTCTGTTTTAGATAACGGATCAGGCTTTATTCTGTTTCGCTGt                       >  2:378951/1‑150 (MQ=255)                                                                                                                             tccCACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGCATTGAATTCTGTTTTAGATAACGGATCAGGCTTTATTCTGTTTCGCTGTAAtt                   >  2:374162/1‑151 (MQ=255)                                                                                                                               ccATGCCAGATCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGCATTGAATTATGTTTTAGATAACGGATCAGGCTTTATTCTGTTTCGCTGTAAtttt                 >  2:879261/1‑151 (MQ=255)                                                                                                                               ccACGCCAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGCATTGAATTCTGTTTTAGATAACGGATCAGGCTTTATTCTGTTTCGCTGTAAtttt                 >  1:161088/1‑151 (MQ=255)                                                                                                                                    ccAGAGCTGCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGCATTGAATTCTGTTTTAGATAACGGATCAGGCTTTATTCTGTTTCGCTGTAATTTTTTTAc            >  1:763678/1‑151 (MQ=255)                                                                                                                                            gCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGCATTGAATTCTGTTTTAGATAACGGATCAGGCTTTATTCTGTTTCGCTGTAATTTTTTTACTCCTTc      <  1:304968/149‑1 (MQ=255)                                                                                                                                            gCCAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGCATTGAATTCTGTTTTAGATAACGGATCAGGCTTTATTCTGTTTCGCTGTAATTTTTTTACTCCTTCa     <  1:177048/150‑1 (MQ=255)                                                                                                                                              cAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGCATTGAATTCTGTTTTAGATAACGGATCAGGCTTTATTCTGTTTCGCTGTAATTTTTTTACTCCTTCAAAt  <  2:667420/151‑1 (MQ=255)                                                                                                                                              cAGCTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGCATTGAATTCTGTTTTAGATAACGGATCAGGCTTTATTCTGTTTCGCTGTAATTTTTTTACTCCTTCAAAt  <  1:158696/151‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                    TTCAAGAGCAGGCTGCAGTAGTGTTACTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTTCTTCTGACATTCACTATTCCCTTTTCGAGATCCACATCCTCCCACGCCAGAGCTGCCAGTTCCCCGTGACGAAGTCCTGAGTAAACGGCAAATTTCCACAAGTTCTGGCTCTGTCCTTTTTCACTTTCCATTAATGCATTGAATTCTGTTTTAGATAACGGATCAGGCTTTATTCTGTTTCGCTGTAATTTTTTTACTCCTTCAAAT  >  NC_000913/1412390‑1412681

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑