Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,423,2900AC42.3% 56.9 / 17.9 54intergenic (+96/+133)yhdZ/rrfFputative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
Reads supporting (aligned to +/- strand):  ref base A (7/23);  new base C (20/2);  total (27/27)
Fisher's exact test for biased strand distribution p-value = 1.08e-06
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTG  >  NC_000913/3423149‑3423429
                                                                                                                                              |                                                                                                                                            
tAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTGCT‑GCCCCCCCCCCAccc                                                                                                                                       >  1:867770/1‑148 (MQ=255)
     cAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGTCCT‑TCCCCCCCCCCCCCCGGcc                                                                                                                                   >  1:11761/1‑148 (MQ=255)
     cAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGt                                                                                                                                 <  2:775733/150‑1 (MQ=255)
          cGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCT‑TCCCCCCCCCCCcccgcccggcgttcc                                                                                                                           >  2:161786/1‑144 (MQ=37)
               gAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTCCCCCCCCCCCCCCCGGGCCG‑TGCTTCGCa                                                                                                                        >  2:951031/1‑149 (MQ=255)
                aGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTGCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑g                                                                                                                    <  1:333847/151‑1 (MQ=255)
                  ggCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCC‑TGCCGCCCCCCTCCGTGGCGGTGTTTCGCCAcagt                                                                                                                   >  2:896252/1‑148 (MQ=25)
                     aTTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGACTCCT‑GTCCCCCCCCCCCCCCGCCGTTGCtttctacactt                                                                                                                   >  1:432364/1‑139 (MQ=255)
                           aTCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCg                                                                                                          <  2:960092/150‑1 (MQ=255)
                              gCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGTTCAT‑CCCCCCCCCCCCCCCCGCCGTGTCTTTTCAAC‑GCTCAACTcaccccc                                                                                                      >  1:796416/1‑145 (MQ=255)
                              gCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTcc                                                                                                      <  2:482645/151‑1 (MQ=255)
                                aGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCcg                                                                                                    <  1:440562/151‑1 (MQ=255)
                                    aaTCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGTCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCcggcg                                                                                                 <  1:947978/150‑1 (MQ=255)
                                       ccATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGAt                                                                                              <  1:823727/150‑1 (MQ=255)
                                        cATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCC‑TCCCCCCCCCCCCCCGGCCGGTGCTTCGCAAC‑ATTCAAAACCGCTCCccgccggctt                                                                                            >  1:231110/1‑145 (MQ=255)
                                             aTTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCt                                                                                       <  2:360172/151‑1 (MQ=255)
                                             aTTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCt                                                                                       <  2:68758/151‑1 (MQ=255)
                                               tGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTa                                                                                      <  2:401103/150‑1 (MQ=255)
                                                     ttAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCggg                                                                                <  1:4922/150‑1 (MQ=255)
                                                     ttAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCC‑GCCCCCCCCCCCCCCGGCCGTTTCTTTTCAAC‑GTTCAAATCCGCCCCCCGCGGGTTTGTCCCACTCggg                                                                                >  1:922490/1‑150 (MQ=17)
                                                     ttAGTACGAAAAGCAAAAAGGCCATCCTGTCGGATGGCCTTTCGCTTGATTTGAGGCCTTGCAGTTTATGGCGGTAGCGCT‑GCCCGCCACCCTCCGGCCCGTTGCGTCGCAAC‑GTTCAAATCCGCGCCCGGCGGATTTGTTCTa                                                                                      <  1:300756/144‑1 (MQ=255)
                                                          tCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCT‑CCCCCCCCCCCCCCCGGCCGTTGCTTCGCAAC‑GCTCAAATCCGCTCCCCGCGGGGTTTTCCtcccccgggggggg                                                                          >  1:964917/1‑138 (MQ=17)
                                                           cGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCT‑CCCCCCCCCCCCCCCGGCCGTTGCTTTGCAAA‑CGTCAAAAACGCCCCCCGCGGGTTTTTTCTACTCcgggggggg                                                                          >  2:653670/1‑144 (MQ=17)
                                                            gAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGtt                                                                        <  2:308054/151‑1 (MQ=255)
                                                                aGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCAcc                                                                    <  1:653603/151‑1 (MQ=255)
                                                                 gCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCg                                                                   <  2:511073/151‑1 (MQ=255)
                                                                   aaaaaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTTCT‑TCCCCCCCCCCCCCCCGCCGCTTCTTCCCCAC‑GCTTCAATCCCCCCCCCGCGGGTTTTTTCCCCTCTGGTGAGTGTTCTccccc                                                                 >  2:123959/1‑148 (MQ=12)
                                                                   aaaaaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCg                                                                   <  1:744101/149‑1 (MQ=255)
                                                                   aaaaaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCC‑CCCCCCCCCCCCCCGGGCCGTTGCTTCGCTAC‑GGTCAAATACGCCCCCGGCGGGGTTTTCCCACTCCGGAGAGGGTTCTCCCac                                                                 >  2:843920/1‑151 (MQ=14)
                                                                   aaaaaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCC‑TCCCCCCACCCCCCCGGGCGCTGCCTTGCAACGGTTCAATCCCCCCCCCGCCGGGTTGTTCCT‑CTCGCGagaggggtttccccc                                                                 >  1:741968/1‑140 (MQ=9)
                                                                    aaaaGGCCATCCTTTCGGATGGCCTGTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGaca                                                                <  1:799081/151‑1 (MQ=255)
                                                                     aaaGGCCTGACTCTCGGATTGCCTTACTCTTGTTTTGATGTTTGACTGTTTATGACGGTAGTCTT‑GTCCGCCGCCCTCCGGGCCGTTGCTTCGCATC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGac                                                                 <  1:912671/149‑1 (MQ=14)
                                                                          ccttcttttCGTGTGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCAGCCCGCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAaacaac                                                          <  1:162198/145‑1 (MQ=14)
                                                                            aTCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCT‑TCCCGCCCCCCTCCCGGGCGTTGCTTTGCAACGGTTCAAAT‑CGCCCCCCGCGGGTTTGTCCTACCCCGGAGAGGGGTCACCCacaaaaaaaa                                                         >  2:298524/1‑148 (MQ=255)
                                                                               cTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCT‑TCCCGCCCCCCTCCCGGCCGTTGCTTCTCCAC‑GTTTAAATCCTCTCCCCGCGGGTTTTTCCTACTCCGGGGAGGGTTCCCCCacaaacaa                                                           >  1:21746/1‑145 (MQ=14)
                                                                                tttCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGGCCC‑GCCCGCCCCCCCCCCGGCCGTTGTTTCGCCAC‑GTTCAAAACCGCTCCCGGCGGGGTTGTTCTACTCGCGGGAGGGGTCACCCACAAAACACAGATa                                                     >  1:370560/1‑150 (MQ=255)
                                                                                      aTGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACaaa                                              <  2:361996/151‑1 (MQ=255)
                                                                                      aTGGCCTTCTGCTTAATTTGATGCCTGGCAGTTTATGGCGGGCGTCCT‑GCCCCCCCCCCCCCCGGCCGGTGGTTTGCAAC‑GATCAAATCCGCCCCCCGCGGGTTTTTTCTTCACCAGCGAGGGTTTACCCACCAACAAAAACTaaaaa                                                 >  1:599427/1‑147 (MQ=0)
                                                                                        ggCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAg                                            <  2:262719/151‑1 (MQ=255)
                                                                                           cTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCT‑TCCCCCCCCCCCCCCGGCCGTTGCTTCGCAAC‑GTTCAAATACCCCCCCCGCGGGTTTTTCCTACTCCGGAGAGTGTTCACCCACAAACAACAGATAAAACAAAAAGcc                                         >  2:841628/1‑151 (MQ=14)
                                                                                               cGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCCCCCACCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGt                                     <  1:356683/151‑1 (MQ=255)
                                                                                                     atttgatGTCTGGCAGTTTATGGCGGGCGTCCT‑GCCCCCCCCCCCCCGGGGCGGTGCTTCCCAAC‑GTTTAAAACCCCTCCCCGCGGGGTTGTCCCACCCGGGAGAGAGTTTCCCCACAAACCACAGATAAAAAAAAAAGCCCAGTCTTcc                                >  1:81579/1‑150 (MQ=2)
                                                                                                          atGTCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGa                          <  2:614733/151‑1 (MQ=38)
                                                                                                                ggCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCttt                    <  2:374764/151‑1 (MQ=35)
                                                                                                                   aGTTTATGGCGGGCGTCCT‑GCCCCCCACCCTCCCGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCCCCCGGCGGGTTTGTCCCACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAAGCCCAGTCTTCCGACTGAGCCTTTTGt                 >  2:80486/1‑151 (MQ=14)
                                                                                                                   aGTTTATGGCGGGCGTCCC‑TCCCGCCCCCCCCCCGGCCGTTGCTTTGCAAC‑GTTCAAATCCGCTCCCGGCGGGGTTTTCCCACCCGGGAGAGGGGTCACCCACCAAAAAAAGATAAAAAAAAAAACCCAGTCCTCCGGCTGGGCCcttttt                 >  1:333599/1‑149 (MQ=2)
                                                                                                                    gTTTATGTCGGGCGTCCT‑GCCCGCCCCCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGt                 <  1:747772/150‑1 (MQ=255)
                                                                                                                         tGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGGGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTAtt           >  1:932705/1‑151 (MQ=38)
                                                                                                                         tGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTAtt           >  1:559542/1‑151 (MQ=38)
                                                                                                                          ggcgggcgTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTAttt          <  1:941537/151‑1 (MQ=38)
                                                                                                                             gggcgTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGAt       >  2:549865/1‑151 (MQ=38)
                                                                                                                              ggcgTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATg      <  2:197009/151‑1 (MQ=38)
                                                                                                                              ggcgTCCT‑GACCGCCACCCTCCGGGCCGTTACTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTCTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGACCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATg      >  1:71242/1‑151 (MQ=255)
                                                                                                                                  tCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTg  >  1:421428/1‑151 (MQ=40)
                                                                                                                                              |                                                                                                                                            
TAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAAC‑GTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTG  >  NC_000913/3423149‑3423429

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑