Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,911,491 Δ7,528 bp [relA][gudD] [relA], rlmD, barA, [gudD]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2911491 2919018 7528 60 [0] [0] 60 [relA]–[gudD] [relA], rlmD, barA, [gudD]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 29114900 (0.000)57 (0.880) 50/280 0.5 100% coding (2162/2235 nt) relA (p)ppGpp synthetase I/GTP pyrophosphokinase
?NC_000913 2919019 = 0 (0.000)coding (367/1341 nt) gudD D‑glucarate dehydratase 1

CCCTTTCCTCAAACCGCTATCATATGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCACTTGCAGGTTGTAAATCTCAATGGTCATGTCGATGGTCGCCAGTTGCTGTTTGGTGTCGCTACGGCTGGCAACGCCAAGCACGTTCACCTTCTCGTTGGCGAGAATGGTCGTGATATCACGTAACAACCCACTACGATCATTAGCTAC  >  NC_000913/2911342‑2911638
                                                                                                                                                    |                                                                                                                                                    
cccTTTCCTCAAACCGCTATCATATGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAga                                                                                                                                                    <  2:48231‑M1/151‑3 (MQ=255)
cccTTTCCTCAAACCGCTATCATATGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAg                                                                                                                                                     <  1:789502‑M1/150‑2 (MQ=255)
     tCCTCAAACCGCTATCATATGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatcc                                                                                                                                                 >  2:692679‑M1/1‑144 (MQ=255)
         cAAACCGCTATCATATGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcatt                                                                                                                                           <  1:792807‑M1/151‑12 (MQ=255)
         cAAACCGCTATCATATGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcatt                                                                                                                                           <  2:965399‑M1/151‑12 (MQ=255)
           aaCCGCTATCATATGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgc                                                                                                                                         >  2:97233‑M1/1‑138 (MQ=255)
                 tATCATATGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttc                                                                                                                                   >  2:347704‑M1/1‑132 (MQ=255)
                  aTCATATGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttct                                                                                                                                  <  2:803504‑M1/151‑21 (MQ=255)
                          tAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccgg                                                                                                                           <  2:181195‑M1/150‑28 (MQ=255)
                            gATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaa                                                                                                                        <  2:869987‑M1/151‑31 (MQ=255)
                             aTACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaac                                                                                                                       >  1:138812‑M1/1‑120 (MQ=255)
                              tACAGTATATATCAATTTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGGGCAACCGACGCGCGTCGATAACATCCTGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgcagcttctatcccggtaact                                                                                                                      >  1:110021‑M1/1‑119 (MQ=255)
                                 aGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactaca                                                                                                                   <  1:873951‑M1/151‑36 (MQ=255)
                                      atatCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaat                                                                                                              >  1:702334‑M1/1‑111 (MQ=255)
                                          cAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtg                                                                                                          >  1:443755‑M1/1‑107 (MQ=255)
                                                aCATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgt                                                                                                    >  2:1069458‑M1/1‑101 (MQ=255)
                                                aCATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggta                                                                                                       <  2:288406‑M1/148‑48 (MQ=255)
                                                     gTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtc                                                                                               <  1:161341‑M1/151‑56 (MQ=255)
                                                     gTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtc                                                                                               <  1:124789‑M1/151‑56 (MQ=255)
                                                      tAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtc                                                                                               >  1:984055‑M1/1‑95 (MQ=255)
                                                      tAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtc                                                                                               >  1:1021281‑M1/1‑95 (MQ=255)
                                                       aGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtca                                                                                              <  1:584755‑M1/150‑57 (MQ=255)
                                                         aTACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaat                                                                                           <  2:360523‑M1/151‑60 (MQ=255)
                                                         aTACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaat                                                                                           <  2:814960‑M1/151‑60 (MQ=255)
                                                             gAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtct                                                                                       >  2:377363‑M1/1‑88 (MQ=255)
                                                              aGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagcggtacgtaggtcaaatgtct                                                                                       >  2:467246‑M1/1‑87 (MQ=255)
                                                               gCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgc                                                                                     <  1:610130‑M1/151‑66 (MQ=255)
                                                                cAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgc                                                                                     >  2:1063021‑M1/1‑85 (MQ=255)
                                                                 aaaTTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgca                                                                                    >  2:880373‑M1/1‑84 (MQ=255)
                                                                     ttCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaacc                                                                                <  2:1062006‑M1/150‑71 (MQ=255)
                                                                        ggCCTAACGCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgc                                                                            <  2:1056999‑M1/151‑75 (MQ=255)
                                                                              aCTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccacca                                                                      <  2:165187‑M1/151‑81 (MQ=255)
                                                                                     tGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcac                                                               >  1:466609‑M1/1‑64 (MQ=255)
                                                                                      gCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacg                                                              >  1:761460‑M1/1‑63 (MQ=255)
                                                                                      gCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcac                                                               <  2:105080‑M1/150‑88 (MQ=255)
                                                                                          ccGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcg                                                          <  1:1014899‑M1/151‑93 (MQ=255)
                                                                                           cGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcattacgatcgg                                                         >  2:554478‑M1/1‑58 (MQ=255)
                                                                                              cgcgcgTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaa                                                      <  2:197411‑M1/151‑97 (MQ=255)
                                                                                               gcgcgTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaa                                                     <  1:513321‑M1/151‑98 (MQ=255)
                                                                                                 gcgTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaag                                                   <  1:434748‑M1/151‑100 (MQ=255)
                                                                                                 gcgTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaag                                                   <  2:342146‑M1/151‑100 (MQ=255)
                                                                                                 gcgTCGATAACAGCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcat                                                      <  1:882737‑M1/148‑97 (MQ=255)
                                                                                                     cGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtatt                                               <  2:717674‑M1/151‑104 (MQ=255)
                                                                                                        tAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacg                                            >  2:777774‑M1/1‑45 (MQ=255)
                                                                                                          aCATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgca                                          <  1:738210‑M1/151‑109 (MQ=255)
                                                                                                          aCATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgc                                           >  2:753507‑M1/1‑43 (MQ=255)
                                                                                                              ccGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccag                                      <  1:260481‑M1/151‑113 (MQ=255)
                                                                                                                    ccTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtc                                  >  1:376699‑M1/1‑33 (MQ=255)
                                                                                                                        gTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtcagaacg                            >  2:301883‑M1/1‑29 (MQ=255)
                                                                                                                          tGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtcagaacgt                           <  1:542455‑M1/150‑124 (MQ=255)
                                                                                                                            aGTTTACCCAGCACGCGACCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtcagaacgttt                         <  1:843173‑M1/150‑126 (MQ=255)
                                                                                                                                tACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtcagaacgtttttgt                     >  1:89257‑M1/1‑21 (MQ=255)
                                                                                                                                tACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtcagaacgtttttg                      <  1:848555‑M1/149‑129 (MQ=255)
                                                                                                                                 aCCCAGTACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtcagaacgtttttgta                    <  2:426581‑M1/150‑131 (MQ=255)
                                                                                                                                          gcgcCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtcagaacgtttttgtattcacccagc          <  1:1003155‑M1/151‑141 (MQ=255)
                                                                                                                                          gcgcCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtcagaacgtttttgtattcacccagc          <  2:292369‑M1/151‑141 (MQ=255)
                                                                                                                                           cgcCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtcagaacgtttttgtattcacccagcg         >  2:36345‑M1/1‑10 (MQ=255)
                                                                                                                                            gcCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtcagaacgtttttgtattcacccagcgt        >  2:28766‑M1/1‑9 (MQ=255)
                                                                                                                                            gcCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtcagaacgtttttgtattcacccagcgt        <  1:631640‑M1/151‑143 (MQ=255)
                                                                                                                                                  gcagatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtcagaacgtttttgtattcacccagcgttttacc  >  1:582735‑M1/1‑3 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
CCCTTTCCTCAAACCGCTATCATATGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCACTTGCAGGTTGTAAATCTCAATGGTCATGTCGATGGTCGCCAGTTGCTGTTTGGTGTCGCTACGGCTGGCAACGCCAAGCACGTTCACCTTCTCGTTGGCGAGAATGGTCGTGATATCACGTAACAACCCACTACGATCATTAGCTAC  >  NC_000913/2911342‑2911638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: