| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,911,491 | Δ7,528 bp | [relA]–[gudD] | [relA], rlmD, barA, [gudD] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2911491 | 2919018 | 7528 | 49 [0] | [1] 50 | [relA]–[gudD] | [relA], rlmD, barA, [gudD] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2911490 | 0 (0.000) | 49 (1.030) | 43/280 | 0.2 | 99.0% | coding (2162/2235 nt) | relA | (p)ppGpp synthetase I/GTP pyrophosphokinase |
| ? | NC_000913 | 2919019 = | 1 (0.020) | coding (367/1341 nt) | gudD | D‑glucarate dehydratase 1 | |||||
GCATGAGTCATCCGGCTGGCTTTGATACGGCAGCGGCGTGGCTTTGCGATTACCGACGAAGAACAGATAACCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAG > NC_000913/2918870‑2919157 | ccctttcctcaaaccgctatcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGa < 1:307502‑M2/2‑1 (MQ=255) caaaccgctatcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCAt < 2:405347‑M2/10‑1 (MQ=255) aaaccgctatcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTg > 2:296941‑M2/140‑151 (MQ=255) accgctatcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGcc < 2:352862‑M2/14‑1 (MQ=255) accgctatcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGcc < 2:546842‑M2/14‑1 (MQ=255) ccgctatcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCg > 1:375961‑M2/137‑151 (MQ=255) atcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCt < 2:405573‑M2/20‑1 (MQ=255) tcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCt > 1:68203‑M2/131‑150 (MQ=255) catatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgttcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTa < 2:793766‑M2/21‑1 (MQ=255) catatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTAt > 1:657637‑M2/130‑151 (MQ=255) atgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATccc < 1:236921‑M2/25‑1 (MQ=255) agtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTAc > 2:579328‑M2/117‑150 (MQ=255) ctacattgtagatacgagcaaatttcggcttaactcccgtgcaaccgacgcgcgtagataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTAc > 1:556772‑M2/104‑151 (MQ=255) cattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGt > 1:230031‑M2/101‑150 (MQ=255) cattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGt > 1:38827‑M2/101‑150 (MQ=255) ttgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAgg > 2:273534‑M2/99‑151 (MQ=255) tgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGt > 1:479999‑M2/98‑151 (MQ=255) tagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTc > 2:551393‑M2/96‑150 (MQ=255) agatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCa > 2:621925‑M2/95‑150 (MQ=255) acgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGt < 1:208384‑M2/61‑1 (MQ=255) cgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTc < 1:163112‑M2/62‑1 (MQ=255) gagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCt > 2:353604‑M2/89‑151 (MQ=255) gagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCt < 1:178601‑M2/63‑1 (MQ=255) gcaaatttcggccgaactcccgtgcaaccgacgcgcgtcgataacatccgtcgcctggttgagttttcccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGtctac < 2:68348‑M2/65‑3 (MQ=255) cggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACcgcg > 2:732352‑M2/79‑151 (MQ=255) ggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCgcgc > 2:771732‑M2/78‑151 (MQ=255) taactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCccac > 2:321892‑M2/74‑151 (MQ=255) taactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCccac > 1:1251‑M2/74‑151 (MQ=255) aactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCccacc < 2:1674‑M2/79‑1 (MQ=255) ccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCAt > 1:149862‑M2/68‑151 (MQ=255) gtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCa < 2:153586‑M2/86‑1 (MQ=255) gcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACg < 1:530568‑M2/88‑1 (MQ=255) aaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGa > 2:250509‑M2/62‑150 (MQ=255) aaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGAt > 1:559813‑M2/62‑151 (MQ=255) aaccgacgcgcgtccataacatccgtcacctggttgagtttgcccatcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTATCTACAGGAATAGTGGTACGTAGGTCAAATGTCGGGAAACCGCGCCCACCCGCATCACg < 1:689968‑M2/88‑1 (MQ=255) cgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCgg < 1:51085‑M2/93‑1 (MQ=255) gcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCaa > 2:235845‑M2/55‑150 (MQ=255) gtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTa < 2:571544‑M2/101‑1 (MQ=255) aacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACg < 1:423214‑M2/106‑1 (MQ=255) ccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCa < 2:11162‑M2/111‑1 (MQ=255) cctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTc > 1:502099‑M2/34‑149 (MQ=255) cctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCa < 2:500412‑M2/117‑1 (MQ=255) ctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTc > 1:751729‑M2/33‑148 (MQ=255) tggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGa > 1:631358‑M2/32‑150 (MQ=255) ggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGaa < 1:790616‑M2/120‑1 (MQ=255) ttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACg < 1:333073‑M2/122‑1 (MQ=255) ttACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGtttt < 2:309243/150‑1 (MQ=255) cacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCAccc > 2:134667‑M2/15‑151 (MQ=255) acgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCAccc > 1:456408‑M2/14‑150 (MQ=255) cgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAg < 2:230066‑M2/139‑1 (MQ=255) | GCATGAGTCATCCGGCTGGCTTTGATACGGCAGCGGCGTGGCTTTGCGATTACCGACGAAGAACAGATAACCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAG > NC_000913/2918870‑2919157 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |