Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 998,719 IS2 (–) +5 bp coding (230‑234/702 nt) elfD → putative periplasmic pilin chaperone

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 381260 =NA (NA)49 (0.880) 44/298 0.5 97.9% noncoding (1/1331 nt) IS2 repeat region
?NC_000913 998719 = 1 (0.020)coding (230/702 nt) elfD putative periplasmic pilin chaperone
* ? NC_000913 = 9987231 (0.020)72 (1.290) 64/298 0.0 98.6% coding (234/702 nt) elfD putative periplasmic pilin chaperone
?NC_000913 1467910 = NA (NA)noncoding (1331/1331 nt) IS2 repeat region

Only 100 of 124 total aligned reads displayed.

AGGCGGGATTGGACTTGCAGCAACACGTCTTGTTTATTCAGAAGGTGAAGAGCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTATTATTACACCACCGCTATTTGTGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTACGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGG  >  NC_000913/998576‑998872
                                                                                                                                                   |                                                                                                                                                     
tttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACTttatt                                                                                                                                                    >  2:574417‑M2/144‑151 (MQ=255)
 ttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACTttatt                                                                                                                                                    <  2:797820‑M2/8‑1 (MQ=255)
 ggCGGGATTGGACTTGCAGCAACACGTCTTGTTTATTCATAAGGTGAATAGCAAATTTCACTGGGTGTACGTTACACCAGTCCGGATGTTCCTTATCTTATTCATTCATGGGTGATGCCCCCCGATCATAAAAAATCAGCTGACTTTtgga                                                                                                                                                   <  1:683687‑M1/151‑5 (MQ=255)
    ctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaacctagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACTttattat                                                                                                                                                  >  1:398160‑M2/140‑149 (MQ=255)
     ggATTGGACTTGCAGCAACACGTCTTGTTTATTCAGAAGGTGAAGAGCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttg                                                                                                                                               >  2:755656‑M1/1‑143 (MQ=255)
      gtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACTTTATTATTac                                                                                                                                               >  1:362662‑M2/138‑150 (MQ=255)
       tgtggtacgccgtctgcgtttctccggccctaagacctcaatcatctgttctccaatgactagtctaaaaactagcattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACTTTATTATTacac                                                                                                                                             >  2:224438‑M2/137‑151 (MQ=255)
            aCTTGCAGCAACACGTCTTGTTTATTCAGAAGGTGAAGAGCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctat                                                                                                                                        >  2:364858‑M1/1‑136 (MQ=255)
               gccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACTTTATTATTACACCACCGCt                                                                                                                                      >  2:408751‑M2/129‑150 (MQ=255)
                  agcaACACGTCTTGTTTATTCAGAAGGTGAAGAGCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttcc                                                                                                                                  <  2:441833‑M1/151‑22 (MQ=255)
                     aaCACGTCTTGTTTATTCAGAAGGTGAAGAGCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccaga                                                                                                                               <  1:453364‑M1/151‑25 (MQ=255)
                      gcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACTTTATTATTACACCACCGCTATTtgtg                                                                                                                               <  2:54155‑M2/29‑1 (MQ=255)
                        acGTCTTGTTTATTCAGAAGGTGAAGAGCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacat                                                                                                                            <  2:605092‑M1/151‑28 (MQ=255)
                        acGTCTTGTTTATTCAGAAGGTGAAGAGCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacat                                                                                                                            >  1:286062‑M1/1‑124 (MQ=255)
                         cGTCTTGTTTATTCAGAAGGAGAAGAGCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacat                                                                                                                            >  2:63015‑M1/1‑123 (MQ=255)
                          gTCTTGTTTATTCAGAAGGTGAAGAGCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatct                                                                                                                          <  2:18975‑M1/151‑30 (MQ=255)
                           tCTTGTTTATTCAGAAGGTGAAGAGCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatct                                                                                                                          <  2:212243‑M1/150‑30 (MQ=255)
                              tGTTTATTCAGAAGGTGAAGAGCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgtt                                                                                                                       <  2:603876‑M1/150‑33 (MQ=255)
                              tGTTTATTCAGAAGGTGAAGAGCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgt                                                                                                                        <  1:577229‑M1/149‑32 (MQ=255)
                              tGTTTATTCAGAAGGTGAAGAGCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctg                                                                                                                         <  1:148309‑M1/148‑31 (MQ=255)
                              tGTTTATTCAGAAGGTGAAGAGCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctg                                                                                                                         <  2:236795‑M1/148‑31 (MQ=255)
                              ccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACTTTATTATTACACCACCGCTATTTGTGCTGAAt                                                                                                                         <  1:869416‑M2/35‑1 (MQ=255)
                              ccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACTTTATTATTACACCACCGCTATTTGTGCTGAAt                                                                                                                         <  2:251366‑M2/35‑1 (MQ=255)
                               gTTTATTCAGAAGGTGAAGAGCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttat                                                                                                                     >  1:794964‑M1/1‑117 (MQ=255)
                                tttATTCAGAAGGTGAAGAGCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATGAAAAATCAGCAGACTTTtgggtttgcccctatatttccagacatctgttatc                                                                                                                    >  2:15866‑M1/1‑116 (MQ=255)
                                tttATTCAGAAGGTGAAGAGCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatc                                                                                                                    >  1:544690‑M1/1‑116 (MQ=255)
                                ggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACTTTATTATTACACCACCGCTATTTGTGCTGAATCCGGc                                                                                                                    >  1:863927‑M2/112‑151 (MQ=255)
                                  tATTCAGAAGGTGAAGAGCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcac                                                                                                                  >  1:497767‑M1/1‑114 (MQ=255)
                                     taagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACTTTATTATTACACCACCGCTATTTGTGCTGAATCCGGc                                                                                                                    >  1:777211‑M2/107‑146 (MQ=255)
                                     taagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACTTTATTATTACACCACCGCTATTTGTGCTGAATCCGGc                                                                                                                    <  2:777307‑M2/40‑1 (MQ=255)
                                      cAGAAGGTGAAGAGCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcactta                                                                                                               >  1:313798‑M1/1‑110 (MQ=255)
                                      aagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACTTTATTATTACACCACCGCTATTTGTGCTGAATCCGGCAAATg                                                                                                               >  2:725278‑M2/106‑150 (MQ=255)
                                        gacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACTTTATTATTACACCACCGCTATTTGTGCTGAATCCGGCAAATg                                                                                                               >  2:367604‑M2/104‑148 (MQ=255)
                                          catcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACTTTATTATTACACCACCGCTATTTGTGCTGAATCCGGCAAATGAGAAt                                                                                                          <  2:130255‑M2/50‑1 (MQ=255)
                                          aGGTGAAGAGCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaaccca                                                                                                          <  1:842856‑M1/151‑46 (MQ=255)
                                          aGGTGAAGAGCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaaccca                                                                                                          <  2:755351‑M1/151‑46 (MQ=255)
                                          aGGTGAAGAGCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaaccca                                                                                                          <  2:804721‑M1/151‑46 (MQ=255)
                                          aGGTGAAGAGCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaaccc                                                                                                           >  2:150234‑M1/1‑106 (MQ=255)
                                            gTGAAGAGCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccatt                                                                                                        <  2:436827‑M1/151‑48 (MQ=255)
                                             caatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACTTTATTATTACACCACCGCTATTTGTGCTGAATCCGGCAAATGAGAATCt                                                                                                        <  2:331439‑M2/52‑1 (MQ=255)
                                              gAAGAGCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccatta                                                                                                       <  1:726129‑M1/150‑49 (MQ=255)
                                               aaGAGCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattac                                                                                                      >  2:693112‑M1/1‑101 (MQ=255)
                                                agagCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagtcatctgttatcacttaacccattacaa                                                                                                    <  1:650799‑M1/151‑52 (MQ=255)
                                                 gagCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattaca                                                                                                     >  2:748855‑M1/1‑99 (MQ=255)
                                                    cAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagccc                                                                                                <  2:84385‑M1/151‑56 (MQ=255)
                                                      aaTTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgc                                                                                              >  2:860611‑M1/1‑94 (MQ=255)
                                                         ttCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgc                                                                                           >  2:421453‑M1/1‑91 (MQ=255)
                                                          tCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgcc                                                                                          >  2:158049‑M1/1‑90 (MQ=255)
                                                           cACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccg                                                                                         >  2:296250‑M1/1‑89 (MQ=255)
                                                             aatgactagtctaaaaactcgtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACTTTATTATTACACCACCGCTATTTGTGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTAc                                                                                        >  1:431477‑M2/83‑150 (MQ=255)
                                                              atgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACTTTATTATTACACCACCGCTATTTGTGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACAt                                                                                      >  1:70374‑M2/82‑151 (MQ=255)
                                                               gggTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgca                                                                                       <  2:544755‑M1/149‑65 (MQ=255)
                                                                gactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACTTTATTATTACACCACCGCTATTTGTGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTg                                                                                    >  2:53129‑M2/80‑151 (MQ=255)
                                                                   tagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACTTTATTATTACACCACCGCTATTTGTGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTgg                                                                                   >  2:839503‑M2/77‑149 (MQ=255)
                                                                    agtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACTTTATTATTACACCACCGCTATTTGTGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAgc                                                                                >  2:848675‑M2/76‑151 (MQ=255)
                                                                      cGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattccc                                                                              <  1:111965‑M1/151‑74 (MQ=255)
                                                                         aaCACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgt                                                                            <  1:828430‑M1/150‑76 (MQ=255)
                                                                           cacCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggc                                                                         >  1:449020‑M1/1‑73 (MQ=255)
                                                                            aactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACTTTATTATTACACCACCGCTATTTGTGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTgg                                                                        <  2:411989‑M2/84‑1 (MQ=255)
                                                                                gTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcg                                                                    <  1:693040‑M1/151‑84 (MQ=255)
                                                                                agtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACTTTATTATTACACCACCGCTATTTGTGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGaa                                                                    <  2:173178‑M2/88‑1 (MQ=255)
                                                                                   cGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgata                                                                 <  2:532011‑M1/151‑87 (MQ=255)
                                                                                      aTGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataac                                                               <  1:834195‑M1/150‑89 (MQ=255)
                                                                                        gactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACTTTATTATTACACCACCGCTATTTGTGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACag                                                              >  2:295361‑M2/56‑149 (MQ=255)
                                                                                        gactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACTTTATTATTACACCACCGCTATTTGTGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACag                                                              >  2:32993‑M2/56‑149 (MQ=255)
                                                                                         actatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACTTTATTATTACACCACCGCTATTTGTGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAgaga                                                           <  1:313467‑M2/97‑1 (MQ=255)
                                                                                          tCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagc                                                          >  1:202987‑M1/1‑58 (MQ=255)
                                                                                           ccTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcg                                                         >  1:777021‑M1/1‑57 (MQ=255)
                                                                                            atcacttatttaagtgatattggttgtctggagattcagggggccagtctaACTTTATTATTACACCACCGCTATTTGTGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAAc                                                        >  1:249103‑M2/52‑151 (MQ=255)
                                                                                            atcacttatttaagtgatattggttgtctggagattcagggggccagtctaACTTTATTATTACACCACCGCTATTTGTGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAAc                                                        >  2:445334‑M2/52‑151 (MQ=255)
                                                                                              tatcttatTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgc                                                        <  1:74700‑M1/149‑96 (MQ=255)
                                                                                                  tatttaagtgatattggttgtctggagattcagggggccagtctaACTTTATTATTACACCACCGCTATTTGTGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCtttt                                                  >  1:67229‑M2/46‑151 (MQ=255)
                                                                                                   tatTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcact                                                     <  1:524364‑M1/147‑99 (MQ=255)
                                                                                                      taagtgatattggttgtctggagattcagggggccagtctaACTTTATTATTACACCACCGCTATTTGTGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTttctt                                               <  2:511272‑M2/109‑1 (MQ=255)
                                                                                                      taagtgatattggttgtctggagattcagggggccagtctaACTTTATTATTACACCACCGCTATTTGTGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTttctt                                               <  1:408694‑M2/109‑1 (MQ=255)
                                                                                                       cAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggat                                             <  2:812033‑M1/151‑107 (MQ=255)
                                                                                                         gtgatattggttgtctggagattcagggggccagtctaACTTTATTATTACACCACCGCTATTTGTGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACt                                           <  2:71426‑M2/113‑1 (MQ=255)
                                                                                                            atattggttgtctggagattcagggggccagtctaACTTTATTATTACACCACCGCTATTTGTGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGc                                        >  2:545214‑M2/36‑151 (MQ=255)
                                                                                                            aTGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccat                                        >  1:71786‑M1/1‑40 (MQ=255)
                                                                                                              gggTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgc                                           <  1:130810‑M1/146‑109 (MQ=255)
                                                                                                              attggttgtctggagattcagggggccagtctaACTTTATTATTACACCACCGCTATTTGTGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGt                                      <  2:183835‑M2/118‑1 (MQ=255)
                                                                                                               ggTGATGACCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcg                                     <  2:581378‑M1/151‑115 (MQ=255)
                                                                                                                  gatgaCCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgtt                                   >  1:234861‑M1/1‑34 (MQ=255)
                                                                                                                      aCCCCAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataat                              <  1:150201‑M1/151‑122 (MQ=255)
                                                                                                                        cccAGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgc                            <  2:345635‑M1/151‑124 (MQ=255)
                                                                                                                         ggagattcagggggccagtctaACTTTATTATTACACCACCGCTATTTGTGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTACGGGCAGTcc                           >  2:796014‑M2/23‑151 (MQ=255)
                                                                                                                           agattcagggggccagtctaACTTTATTATTACACCACCGCTATTTGTGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTACGGGCAGTCCCt                         <  2:351266‑M2/131‑1 (MQ=255)
                                                                                                                           aGATAATAAAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgtcgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcg                         >  1:171490‑M1/1‑25 (MQ=255)
                                                                                                                             ataaaaGAAAATCAGCAGACTTTATTATTACACAAGAACTATTTGAGCTAAATATGGCAAATGAGAATATGATACGCGTTATGTACATTGGAGCGCAGCTGGAGAAAGCGAGAGAAACCCTTTTCTTCAGTAGAGTACggagagtgc                           >  1:189245/1‑140 (MQ=255)
                                                                                                                               aataaAAAATCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaac                      <  2:288206‑M1/150‑130 (MQ=255)
                                                                                                                                  aaaaaaTCAGCAGACTTTttgatttgtccctatatttccagacatctgttatcacttaacccattacatgcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattctttataatgctccagcgcc                   <  1:500253‑M1/150‑133 (MQ=255)
                                                                                                                                    aaaaTCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctct                <  1:775509‑M1/151‑136 (MQ=255)
                                                                                                                                     aaaTCAGCAGACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctg               >  1:277103‑M1/1‑15 (MQ=255)
                                                                                                                                         cagcagACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaag           <  1:533491‑M1/151‑141 (MQ=255)
                                                                                                                                           gcagACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggt         >  2:128632‑M1/1‑9 (MQ=255)
                                                                                                                                             agACTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttc       >  2:521534‑M1/1‑7 (MQ=255)
                                                                                                                                               aCTTTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctt     >  1:712126‑M1/1‑5 (MQ=255)
                                                                                                                                                cTTTATTATTACACCACCGCTATTTGTGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTACGGGCAGTCCCTTCAACAACGAAGCGGaa        >  2:489873/1‑147 (MQ=255)
                                                                                                                                                 tttATTATTACACCACCGCTATTTGTGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTACGGGCAGTCCCTTCAACAACGAAGCGGAAAGAgg   >  2:495523/1‑151 (MQ=255)
                                                                                                                                                   tattattaCACCACCGCTATTTGTGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTACGGGCAGTCCCTTCAACAACGAAGCGGAAAGAggg  <  1:699909/150‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                     
AGGCGGGATTGGACTTGCAGCAACACGTCTTGTTTATTCAGAAGGTGAAGAGCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTTATTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCAGACTTTATTATTACACCACCGCTATTTGTGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTACGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGG  >  NC_000913/998576‑998872

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.