| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,911,491 | Δ7,528 bp | [relA]–[gudD] | [relA], rlmD, barA, [gudD] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2911491 | 2919018 | 7528 | 48 [0] | [0] 48 | [relA]–[gudD] | [relA], rlmD, barA, [gudD] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2911490 | 0 (0.000) | 45 (0.860) | 40/280 | 0.5 | 100% | coding (2162/2235 nt) | relA | (p)ppGpp synthetase I/GTP pyrophosphokinase |
| ? | NC_000913 | 2919019 = | 0 (0.000) | coding (367/1341 nt) | gudD | D‑glucarate dehydratase 1 | |||||
GAGTCATCCGGCTGGCTTTGATACGGCAGCGGCGTGGCTTTGCGATTACCGACGAAGAACAGATAACCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTA > NC_000913/2918874‑2919164 | ttcctcaaaccgctatcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATcc < 1:470589‑M2/5‑1 (MQ=255) caaaccgctatcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCAtt < 1:410150‑M2/11‑1 (MQ=255) aaaccgctatcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTg < 2:870399‑M2/12‑1 (MQ=255) aaaccgctatcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTg > 2:70377‑M2/140‑151 (MQ=255) aaaccgctatcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTg > 1:465557‑M2/140‑151 (MQ=255) ctatcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCtt > 1:82564‑M2/134‑151 (MQ=255) atcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgctccagcaGATCCAGCATTGCCGCtt < 2:575854‑M2/18‑1 (MQ=255) tcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCt > 2:182646‑M2/131‑150 (MQ=255) tatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATcc > 1:268107‑M2/128‑151 (MQ=255) atgtagatacagtatatatcactctacattgtagatccgagcaaatttcggcctaactcccgtgcaaccgacgcgcctcgatatcatccggcacctggttgagtttacccagcacgcgccccagcaGATCAAGAATTTACGCTTCTATcc < 1:182613‑M2/24‑1 (MQ=255) agtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTAc > 1:47155‑M2/117‑150 (MQ=255) agtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTAc > 2:171650‑M2/117‑150 (MQ=255) tatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATg > 2:17946‑M2/115‑151 (MQ=255) atatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAAt > 1:397471‑M2/112‑151 (MQ=255) atcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAg < 2:831534‑M2/42‑1 (MQ=255) tcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGt > 2:468512‑M2/109‑151 (MQ=255) tacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACg > 2:462545‑M2/103‑151 (MQ=255) acattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTa < 2:562953‑M2/47‑1 (MQ=255) cattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGt > 2:129254‑M2/101‑150 (MQ=255) attgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGt > 2:11039‑M2/100‑149 (MQ=255) attgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAg < 2:798569‑M2/52‑1 (MQ=255) gtagatacgagcaaatttcggcctaacgcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGTTACGTAGGt < 2:633011‑M2/54‑1 (MQ=255) agatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCa > 2:466162‑M2/95‑150 (MQ=255) agatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCa < 2:851020‑M2/56‑1 (MQ=255) atacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAAt > 2:373025‑M2/93‑151 (MQ=255) atacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAAt > 1:606728‑M2/93‑151 (MQ=255) acgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGt < 2:305413‑M2/61‑1 (MQ=255) acgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGt < 2:610515‑M2/61‑1 (MQ=255) cgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTc < 1:369229‑M2/62‑1 (MQ=255) aaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCa > 2:840282‑M2/85‑150 (MQ=255) ctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGccc > 2:171384‑M2/75‑150 (MQ=255) aactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCccacc > 2:194116‑M2/73‑151 (MQ=255) aactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCccac < 1:314318‑M2/78‑1 (MQ=255) cccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttccccagcactcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAGCCGCGCCCACCAGc < 1:311567‑M2/82‑1 (MQ=255) gtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATc > 2:342309‑M2/66‑150 (MQ=255) gcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCAc < 1:327199‑M2/87‑1 (MQ=255) gcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACg < 2:557941‑M2/88‑1 (MQ=255) cgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGt < 2:107741‑M2/100‑1 (MQ=255) cgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTAt < 1:296900‑M2/102‑1 (MQ=255) aacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGc > 2:484730‑M2/45‑151 (MQ=255) tacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGt < 1:515311‑M2/129‑1 (MQ=255) gcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCAcc > 1:695666‑M2/16‑151 (MQ=255) acgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACTAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCAccc > 1:464543‑M2/14‑150 (MQ=255) acgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCAccc > 1:675978‑M2/14‑150 (MQ=255) gcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGc < 2:488770‑M2/140‑1 (MQ=255) ccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGtttt < 2:465616‑M2/145‑1 (MQ=255) ccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGtttt > 1:872521‑M2/7‑151 (MQ=255) cagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTa < 2:681413‑M2/146‑1 (MQ=255) | GAGTCATCCGGCTGGCTTTGATACGGCAGCGGCGTGGCTTTGCGATTACCGACGAAGAACAGATAACCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTA > NC_000913/2918874‑2919164 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |