Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,676,1060CA39.3% 69.5 / 26.1 58L240F (TTG→TTT) yphDputative sugar ABC transporter permease
Reads supporting (aligned to +/- strand):  ref base C (24/10);  new base A (0/22);  total (24/34)
Fisher's exact test for biased strand distribution p-value = 3.26e-08
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CGTAATCACCAGCACACCAAGCAATGTACCGAACAGGGAA‑CCGCGACCGCCGGAAAGTGCCGTACCGCCGACCACGACCGCGGCGATGACGTCAAACTCCAGACCGTTTGCGGCACC‑TGCGTTACCAGAACCGAGG‑CGCGCCGCCAACAAAATGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGGCGGTTTTGCGGCTG  >  NC_000913/2675959‑2676250
                                                                                                                                                      |                                                                                                                                                  
cGTAATCACCAGCACACCAAGCAATGTACCGAACAGGGAA‑CCGCGACCGCCGGAAAGTGCCGTACCGCCGACCACGACCGCGGCGATGACGTCAAACTCCAGACCGTTTGCGGCACC‑TGCGTTACCAGAACCGAGG‑CGCGCCGCcaacaa                                                                                                                                                  >  2:716044/1‑150 (MQ=255)
   aaTCACCAGCACACCAAGCAATGTACCGAACAGGGAA‑CCGCGACCGCCGGAAAGTGCCGTACCGCCGACCACGACCGCGGCGATGACGTCAAACTCCAGACCGTTTGCGGCACC‑TGCGTTACCAGAACCGAGG‑CGCGCCGCCAACAAAAt                                                                                                                                               >  1:9638/1‑150 (MQ=255)
      cACCAGCACACCAAGCAATGTACCGAACAGGGAA‑CCGCGACCGCCGGAAAGTGCCGTACCGCCGACCACGACCGCGGCGATGACGTCAAACTCCAGACCGTTTGCGGCACC‑TGCGTTACCAGAACCGAGG‑CGCGCCGCCAACAAAATGcc                                                                                                                                            <  1:267113/150‑1 (MQ=255)
       aCCAGCACACCAAGCAATGTACCGAACAGGGAA‑CCGCGACCGCCGGAAAGTGCCGTACCGCCGACCACGACCGCGGCGATGACGTCAAACTCCAGACCGTTTGCGGCACC‑TGCGTTACCAGAACCGAGG‑CGCGCCGCCAACAAAATGCCgg                                                                                                                                          <  2:727758/151‑1 (MQ=255)
                  aaGCAATGTACCGACCAGGGAA‑CCGCGACCGCCGGAAAGTGCCGTACCGCCGACAACGACCGCGGCGACGACGCCAAACTCCAGACCGATTGCGCCACC‑TGCGTTACCAGAACCGAGG‑CGCGCCGCCAACAAAATGCGGG‑TCACcgccgc                                                                                                                               >  1:412185/1‑150 (MQ=255)
                      aaTGTCCCGAACGGGGAC‑CCGCGCCCGCCGGAAAGTGCCGTCCCGCCGCCCACGCCCGCGGGGATGACGTCAAACCCCAGCCCGTTGGCGGCCCC‑TGCGTTACCAGACCCGAGG‑CGCGCCCCCAACAAAATGCCGG‑TCACCGCCGCta                                                                                                                             <  2:545322/148‑1 (MQ=255)
                        tGTACCGAACAGGGAA‑CCGCGACCGCCGGAAAGTGCCGTACCGCCGACCACGACCGCGGCGATGACGTCAAACTCCAGACCGTTTGCGGCACC‑TGCGTTACCAGAACCGAGG‑CGCGCCGCCAACAAAATGCCGG‑TCACCGCCGCcaataa                                                                                                                         >  1:909831/1‑150 (MQ=255)
                               aaCAGGAAC‑CCGCGCCCGCGGAAAAGTGCCGTCCCCCCGCCCACGCCCGCGGCGATGCCGTCAAACCCCAGACCGTTTGCGGCCCC‑TGCTTTCCCAGACCCGAGG‑CGCGCCGCCAACAAAATGCCGG‑TCACCGCCGCTAATAATCCCGaaa                                                                                                                 <  2:804479/151‑1 (MQ=255)
                                 acgggAACCCGCGCCCGCCGAAAAGGGCCGTCCCGCCGCCCACGCCCGCGGGGATGACGCCAACCCCCAGCCCTTTTGCGGCCCC‑TGCGTTCCCAGAACCGAGG‑CGCGCCCCCAAAAAAAGCCCGG‑TCACCGCCGCTAATAATCCCGaaa                                                                                                                 <  2:962766/148‑1 (MQ=255)
                                   gggAG‑CCGCGCCCGCAGAAAAGTCCCCAACCCCCCACCCCGCCCGGGGAGATGCCGTCAACCTCCAGACCTTAGGCGCCGCT‑TGCTTCACAAGAACGGAGC‑CGCGCCGCCAACAAAGGACGGG‑CCACCGCCGCTAATAATCCCGAAA‑g                                                                                                               <  1:802698/148‑1 (MQ=255)
                                     gAA‑CCGCGACCGCCGGAAAGTGCCGTACCGCCGACCACGACCGCGGCGATGACGTCAAACTCCAGACCGTTTGCGGCACC‑TGCGTTACCAGAACCGAGG‑CGCGCCGCCAACAAAATGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTa                                                                                                           >  2:648499/1‑150 (MQ=255)
                                       accccggcccgccaGAAATTGCCGCGCCGCCGACCACGACGGCGGCGAAGACGTCAAACCCCAGCCCGTTGGCGCCCCC‑TTCGTAACCAGAGCCGAGG‑CGCGCCGCCAACAAAGTGCGGC‑TCACCGCCGCTAATAATCCCGAAA‑GGGTa                                                                                                           <  1:178232/141‑1 (MQ=255)
                                        cccgggcccgccgGAAGGGGCCGCCCCCCCAACCCCGACCGGGGCGATGACGCCAAACCCCAGACCGTGTGCGCCACC‑TGCGTTGCCAGAACGGGGG‑CGCGCGGCGAACAAAATGCGGG‑GCACCGCCGCTAATAATCCCGaaa                                                                                                                 <  1:168948/136‑1 (MQ=255)
                                               ccgcggGAAGGTGCCTCCCCCCCTACCCCCACCGCGGGTATCACGACAAACCCCAG‑CCGGTTGCCGCCCCTTCCGTTCCCAGAACGAAGC‑CGCGCCGCCAAAAAAGTGCCGT‑ACACCGCCGCTAATAAGCCCGAAA‑GGGTAAAGATaa                                                                                                    <  1:840740/148‑1 (MQ=255)
                                               ccgcggAAAAGTGCCGTCCCGCCGACCACGCCCGCGGCGATGCCGTCAACCCCCAGACCGTTTGCGGCCCC‑TGCTTTACCAGACCCGAGG‑CGCGCCGCCAAAAAAATGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAg                                                                                                   <  2:2265/149‑1 (MQ=255)
                                               ccgccgGAAAGTGCCGTCCCGCCGACCACGCCCGCGGCGATGACGTCAACCCCCAGACCGTTTGCGGCACC‑TGCGTTCCCAGAACCGAGG‑CGCGCCGCCAAAAAAAGGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATaa                                                                                                    <  2:886781/148‑1 (MQ=255)
                                               ccgccgAAAAGTGCCGTACCGCCGCCCACGACCGCGGCGATGACGTCAACCCCCAGACCGTTTGCGGCCCC‑TGCGTTACCAGACCCGAGG‑CGCGCCGCCAAAAAAATGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATaa                                                                                                    <  2:715440/148‑1 (MQ=255)
                                               ccgccgAAAAGTCCCGTACCGCCGCCCACGACCGCGGCGATGACGTAAACCCCCAGCCCGTTTGCGGCCCC‑TGCGTTCCCAGAACCGAGG‑CGCGCCGCAAAAAAAATGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATaa                                                                                                    <  2:105238/148‑1 (MQ=255)
                                                  cggaaaaGTCCCTTCCCGCCGACCACGCCCGCGGCGATGACGTCAAACTCCAGACCGTTTGCGGCCCC‑GGCGTTCCCAGAACCGAGG‑CCCGCCGCAAACAAAAGGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATg                                                                                               <  2:467251/146‑1 (MQ=255)
                                                  ccgGAAAGGGCCGTACCGCCGACCACGACCGCGGCGATGACGTCAACCCCCAGCCCGTTGGCGGCCCC‑TGCGTTCCCAGACCCGAGG‑CGCGCCGCCAAAAAAAGGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAAt                                                                                                <  2:309426/149‑1 (MQ=255)
                                                   cgGAAAGTGCCGTACCGCCGACCACGACCGCGGCGATGACGTCAAACTCCAGACCGTTTGCGGCACC‑TGCGTTACCAGAACCGAGG‑CGCGCCGCCAACAAAATGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTTAAGATAAGAATgcg                                                                                             >  2:953826/1‑151 (MQ=255)
                                                    ggAAAGTGCCGTACCGCCGACCACGACCGCGGCGATGACGTCAAACTCCAGACCGTTTGCGGCACC‑TGCGTTACCAGAACCGAGG‑CGCGCCGCCCACAAAATGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAACAATgcgc                                                                                            >  1:532663/1‑151 (MQ=255)
                                                      aaaGTGCCGTACCGCCGCCCCCGCCCGCGGCGATGACGTCAAACTCCAGACCGTTGGCGGCACC‑TGCGTTCCCAGACCCGGGG‑CGCGCCGCAAAAAAAATGCGGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCAc                                                                                          <  2:484042/151‑1 (MQ=255)
                                                            ccGTCCCGCCGCCCACGCCCGCGGCGATGACGTCAACCCCCAGCCCGTTTGCGGCCCC‑TGCGTTACCAGACCCGAGG‑CGCGCCGCCAAAAAAATGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCAccc                                                                                        <  2:795401/147‑1 (MQ=255)
                                                              gTACCGCCGACCACGACCGCGGCGATGACGTCAAACTCCAGACCGTTTGCGGCACC‑TGCGTTACCAGAACCGAGG‑CGCGCCGCCAACAAAATGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCACCcgacga                                                                                   >  2:772400/1‑150 (MQ=255)
                                                                    ccgCCCACGACCGCGGCGATGACGTCAACCTCCAGCCCGTTTGCGGCCCC‑TGCGTTCCCAGAACCGAGG‑CGCGCCGCAAACAAAATGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCACCCGACGAACGTTg                                                                             <  2:978029/150‑1 (MQ=255)
                                                                     cgACCACGACCGCGGCGATGACGTCAAACTCCAGACCGTTTGCGGCACC‑TGCGTTACCAGAACCGAGG‑CGCGCCGCCAACAAAATGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCACCCGACGAACGTTGAt                                                                           >  2:842997/1‑151 (MQ=255)
                                                                     cgACCACGAACGCGGCGATGACGTCAAACTCCAGACCGTTTGCCCCACC‑TGCGTTACCAGAACCGAGG‑CGCGACGCCAACAAAATGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGAAAAGATAAGAATGCGCCCCCGACGAACGTTg                                                                             >  1:1109397/1‑149 (MQ=255)
                                                                           agcccGCGGCGGGGAAGTCAACCTCCAGCCCTTTTGCGTCCCC‑TGCTTTCCCAAACCCGACC‑CGCGCGCCCAAAAAACTGCAGG‑ACACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCACCCGACGAACg                                                                                <  1:657749/137‑1 (MQ=255)
                                                                            gACCGCGGCGATGACGTCAAACTCCAGACCGTTTGCGGCACC‑TGCGTTACCAGAACCGAGG‑CGCGCCGCCAACAAAATGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGcac                                                                    >  2:813845/1‑151 (MQ=255)
                                                                            gACCGCGGCGATGACGTCAAACTCCAGACCGTTTGCGGCACC‑TGCGTTACCAGAACCGAGG‑CGCGCCGCCAACAAAATGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGcac                                                                    >  2:119928/1‑151 (MQ=255)
                                                                                  ggcgATGACGTCAAACCCCAGCCCGTTTGCGGCCCC‑TGCGTTACCAGAACCGAGG‑CGCGCCGCAAAAAAAATGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACt                                                                <  2:188477/149‑1 (MQ=255)
                                                                                   gggtagacgacAAACTCCAGACCGTTGGCGCCACT‑GGCGTTCCCACACGAGGGG‑CGGGCCGCAAAAAAAAGGCCGT‑CCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCGCCCGACGAACGTTGATGCCGCACAACTg                                                               <  1:204567/144‑1 (MQ=255)
                                                                                    cgATGACGTCAAACTCCAGACCGTTTGCGGCACC‑TGCGTTACCAGAACCGAGG‑CGCGCCGCCAACAAAATGCCGG‑TCACCGCCGCTAATCATCCCGAAC‑GGGTAAAGACAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTgccc                                                            >  1:968710/1‑149 (MQ=255)
                                                                                     gATGACGTCAAACTCCAAACCGTTTGCGGCACC‑TGAGTTACCAGAACCGAGG‑CGCCCCGCCAACAAAATGCCGG‑TCACCCCCGCTAATAATCCCGAAA‑GGGAAAAGAGAAGAATGCGCACCAGACGAACGTTGATGCCGCACACCTGcgcc                                                           >  1:122029/1‑151 (MQ=255)
                                                                                         aCGTCAAACTCCAGACCGTTTGCGGCACC‑TGCGTTACCAGAACCGAGG‑CGCGCCGCCAACAAAATGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGccgccg                                                       >  2:954182/1‑151 (MQ=255)
                                                                                          cGTCAAACTCCAGACCGTCTGCGGCACC‑TGCGTTACCAGAACCGAGG‑CGCGCCGCCAACAAAATGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGCAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGt                                                      >  1:541448/1‑151 (MQ=255)
                                                                                           gcaacaCTCCAGACGGTGGGCGGCGCC‑TGCGTCCAGAGACCGGGGG‑GGCGCCGAAAATAACAGGCCGT‑ACCCCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGccgccg                                                       <  1:934156/144‑1 (MQ=255)
                                                                                           gcaaaaCCCCAGACGGTGTGGGCCACC‑TGCTTTCCCAGAGCGGAGC‑CGGGCCGCCAAAAAAATGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCgccgcc                                                        <  1:450762/145‑1 (MQ=255)
                                                                                                 ccccctccccttggCGGCCCC‑CGCATTTCCAAAACGGAGGCCCCGCCGCCAA‑AAAAGCCCGGTTCCCCGCCGCTAATAACCCCGAAA‑GGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTa                                                     <  1:879317/133‑1 (MQ=255)
                                                                                                       aCCGTTTGCGCCGCC‑GGGGTTCCCAGACCCGAGG‑CGCGCCGCAAACAAAAGGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCTCAACTGCGCCGCCGTAGCa                                                  <  1:260636/142‑1 (MQ=255)
                                                                                                          gTTTGCGGCACC‑TGCGTTACCAGAACCGAGG‑CGCGCCGCCAACAAAATGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACg                                      >  2:407228/1‑151 (MQ=255)
                                                                                                           tttGCGGCCCC‑TGCGTTACCAAACCCGAGG‑CGCGCCCCAAAAAAAATGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACg                                      <  2:9641/150‑1 (MQ=255)
                                                                                                           ttggcgccccc‑TGCGTTCCCAGACCGGAGG‑GGCGCCGCAAAAAAAATGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTa                                               <  2:826558/132‑1 (MQ=255)
                                                                                                            ttGCGGCACC‑TGCGTTACCAGAACCGAGG‑CGCGCCGCCAACAAAATGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGc                                    >  2:359073/1‑151 (MQ=255)
                                                                                                            tggCGGCCCC‑TGCTTCACAAGACCGGGGC‑CGCGCCCCAAAAAAAGGGCCGG‑CCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACgg                                     <  1:913637/148‑1 (MQ=255)
                                                                                                                ggCACC‑TCCGTGACCAGAACCGAGG‑CGCGCCGCCAACAAAATGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCaaa                                 >  1:676274/1‑150 (MQ=255)
                                                                                                                    cccggggTTACCAAAACGGGGG‑CGCCCCCAAAAAAAAACGCGGG‑CCCCCGCCGCTAATAATCCCGAAAGGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAAc                              <  1:127681/145‑1 (MQ=255)
                                                                                                                     c‑TGCGTTACCAGAACCGAGG‑CGCGCCGCCAACAAAATGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCg                            >  1:738892/1‑150 (MQ=255)
                                                                                                                         cGTTCCCAAACCCGGGG‑CGCGCCGCAAAAAAAATGCCGT‑CCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAgc                         <  2:538718/150‑1 (MQ=255)
                                                                                                                         cGTTACCAGAACCGAGG‑CGCGCCGCCAACAAAATGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAgcg                        >  2:1116729/1‑151 (MQ=255)
                                                                                                                            gacaaGACCCGAGG‑CCCGCCACCAAAAAAAGCCCGT‑ACCCCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGa                           <  1:602491/141‑1 (MQ=255)
                                                                                                                              ccAGAACCGAGG‑CGCGCCGCCAACAAAATGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCg                    >  2:162592/1‑150 (MQ=255)
                                                                                                                                agaccggggg‑CCCGCCGCCAAAAAAGTCCTGG‑TCCCCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACACCTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGa                           <  1:284245/133‑1 (MQ=255)
                                                                                                                                     ccaGG‑CGCGCCGCCAACAAAATGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGAGCCCCCGACGAACGTTGATGCCGCACAAACGCGCCGCCGCAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGGCGGt            >  1:454678/3‑151 (MQ=255)
                                                                                                                                        gg‑CGCGCCGCAAAAAAAAGGCCGG‑CCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGGCGGtttt         <  2:719106/151‑1 (MQ=255)
                                                                                                                                             cgccgcCAACAAAATGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGGCGGTTTTGCgg     >  2:456983/1‑151 (MQ=255)
                                                                                                                                             cgccccCAAAAAAACCCCGG‑TCCCCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACGGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGGCGGt            <  1:97777/144‑1 (MQ=255)
                                                                                                                                                 gccAACAAAATGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGGCGGTTTTGCGGCtg  >  2:660560/1‑150 (MQ=255)
                                                                                                                                                      |                                                                                                                                                  
CGTAATCACCAGCACACCAAGCAATGTACCGAACAGGGAA‑CCGCGACCGCCGGAAAGTGCCGTACCGCCGACCACGACCGCGGCGATGACGTCAAACTCCAGACCGTTTGCGGCACC‑TGCGTTACCAGAACCGAGG‑CGCGCCGCCAACAAAATGCCGG‑TCACCGCCGCTAATAATCCCGAAA‑GGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGGCGGTTTTGCGGCTG  >  NC_000913/2675959‑2676250

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑