Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,580,634 | 0 | C | T | 38.6% | 86.0 / 18.2 | 59 | E277K (GAA→AAA) | hsdS | specificity determinant for hsdM and hsdR |
Reads supporting (aligned to +/- strand): ref base C (6/29); new base T (22/0); total (30/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.08e-10 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTA‑GTTCACTTTCTGAACA‑TTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATT > NC_000913/4580488‑4580784 | tAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTA‑GTTCa > 2:158951/1‑148 (MQ=255) aaTCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGATTA‑TGTTACttt > 2:136955/1‑151 (MQ=255) atctatttctaataatTTTATCATCATATAACAAATTTTTATTTTATAATTTTTTCAATAAACTACAAACACCATCAAATTCTAAACTTCCTTTATATCTAATAAATAAAACATCTCCATCTTGTAATTTGTGTGGGTTTA‑GTTCAGtt < 1:350077/139‑1 (MQ=255) aGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTT‑GTTTACttt > 2:55430/1‑146 (MQ=255) cTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTA‑TTTCACttttttaa > 2:668442/1‑144 (MQ=255) tCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTT‑GTTTACTTTTTTAACa > 2:722041/1‑150 (MQ=255) cGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTA‑GTTCACTTTCTGAACa < 2:924880/149‑1 (MQ=255) aaTAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTT‑GTTTTCttttttgatctttt > 1:267792/1‑140 (MQ=255) aaTAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTT‑GTTTACttttttaa > 1:62087/1‑140 (MQ=255) aTAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTGTCAATAACCCACAAACACCAACAAATTCTATACTTCCGTTTTAGCAAGTAAAGAAAAGATCTCCATCTTATAATTTGTGGGGGGTTA‑GTTCACTTTCTGAACA‑tt < 1:597788/148‑1 (MQ=255) aTCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTA‑GTTCACTTTCTGAACA‑TTCTAGAAACCGa < 2:437369/151‑1 (MQ=255) gATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTA‑GTTCACTTTCTGAACA‑TTCTAGAAACCGAatat < 1:33324/150‑1 (MQ=255) tataGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAAC‑TCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTT‑TTTTACTTTTTTAACA‑ATTTAGAAAACGCAAATCGtt > 2:357499/1‑151 (MQ=255) aGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTA‑GTTCACTTTCTGAACA‑TTCTAGAAACCGAATATCGtttt < 1:313294/151‑1 (MQ=255) gCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTA‑TTTTACTTTTTTAAAA‑ATCTAAAAAACCAAAATCGtttt > 2:1036373/1‑150 (MQ=255) cAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGGTTACATTAACTTT‑TGAACC‑TTTTAGAAAcctgaattacct > 1:131811/1‑137 (MQ=255) ttGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTT‑GTTTACTTTTTTAAAA‑TTCTAGAAACCGAAAATAGTTTTTATCt > 2:694403/1‑148 (MQ=255) aTGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTT‑GTTCACTTTTTTGAAA‑ATCTAGAAAACGAATATCGTTTTTAttt > 2:991718/1‑143 (MQ=255) gttgtAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTT‑GTTTACTTTTTTAACA‑TTCTAAAAAACGAATATCGTTTTTATTTACATgggc > 2:49787/1‑149 (MQ=255) tgtAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTA‑GTTCACTTTCTGAACA‑TTCTAGAAACCGAATATCGTTTTGATCTACATGGCCa < 2:272192/150‑1 (MQ=255) tAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTT‑TTTTACTTTTTTTACA‑TTTTTTAAAACCAATATAGttttttt > 1:558978/1‑134 (MQ=255) aaTTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTT‑GTTTTCTTTCTTAAAA‑TTCTAGAAAACCAATATCGTTTTGATCTACATTGCCAGc > 2:1065590/1‑149 (MQ=255) aaTTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTA‑GTTCACTTTCTGAACA‑TTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCAc < 2:606966/151‑1 (MQ=255) tttttCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTACTTTGTGGCGGCTTT‑CTTTACCCTCTCAAAA‑TTCTCAAAACCCAACATCTTTTTTATCTAcctcccctcc > 1:337700/1‑137 (MQ=255) tttCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTA‑GTTCACTTTCTGAACA‑TTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTAc < 1:735254/150‑1 (MQ=255) aTAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTA‑GGTTACTTTCTTAAAA‑TTCTAGGAACCGAATATTGTTTTGTTCTTCAAGGCCCGCACCGACAGaa > 2:248264/1‑149 (MQ=255) ccACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTT‑GTTTCCTTTTTTAACA‑ATTTTGAAAACGAATATCGTTTTTATCTTCATAGCCACCACCTACAGAACTAATgg > 2:812973/1‑150 (MQ=255) ccACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTA‑GTTCACTTTCTGAACA‑TTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATg < 1:191220/150‑1 (MQ=255) cacaAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTT‑GTTTACTTTTTTAACA‑TTCTAGAAAACGAATATAGTTTTTATCTACATGGCCCGCACGTACAGAAATAATGCg > 2:262160/1‑151 (MQ=255) caacaaATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTA‑GTTCACTTTCTGAACA‑TTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTgg < 2:290625/151‑1 (MQ=255) ccGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTA‑GTTCACTTTCTGAACA‑TTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACttt < 1:112873/151‑1 (MQ=255) cGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTT‑GTTTACTTTTTTAACA‑TTCTAGAAAACGAATATCGTTTTTATTTACATTGCCCGCACGTACAGAACTAAAGCGTAGGATTTGGTGACCAACAACACctt > 2:995788/1‑150 (MQ=255) gTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTT‑GTTTACTTTTTGGACA‑TTTTAGAAACCGAATATCGTTTTTATCTACATGGCCAGCACGGACAAAAATAAAGCGTAGTATTTGATGACCAACACCACtt > 2:73070/1‑148 (MQ=255) ataGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTT‑GTTTACCTTTTTAACA‑TTCTTGAAAACGAATATTGTTTTTATCTTCATGGCCAGCACGGACAGAACTAATTCGGAGTATTGGATGACCAACACCACCTTTAttt > 2:673705/1‑151 (MQ=255) taGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTT‑GTTTACTTTCTTAACA‑TTTTAGAAAACGAAAATCGTTTTTATCTACATGGCCAGCACGTACAGAAATAATGCGTAGTATTTGGTGACCAAAACCACTTTCAttt > 2:271757/1‑150 (MQ=255) aGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTT‑GGTTAATTTTTTTAAA‑TTTTAAAAAACTAATATCGTTTTTTTTTATATCGTTAGCACGTAAAAAAATAATGGGAAGGTTTGGATTGCCAACACCACtcttttt > 1:34808/1‑142 (MQ=255) aGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTA‑GTTCACTTTCTGAACA‑TTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTgg < 2:511915/151‑1 (MQ=255) aGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGCTTA‑TTTCCCTTTTTTAACA‑TTCTATAAACCCAAAATCGTTTTTATCTACATTGTCCGCACCGACAGAAATAAAGCGTAGTATTTGGGGAACAACACCCCttttaattt > 2:765505/1‑144 (MQ=255) gAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTT‑GTTTACTTTTTGAACA‑TTCTAGAAAACGAATATCGTTTTTATTTACATGGGCAGCACGTACAGAAATAATGCGTAGTATTTGATGACCAAAACCACTTTTATTTTGCtt > 2:520074/1‑151 (MQ=255) gAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTT‑GTTGCCTTTTTGAACA‑TTCTAGAAAACGAACATCGTTTTTTTTTACATGGGCACCCCGTGCAAAACCAATGCGTAGTAATCGATAACCCACACCCCatttattt > 2:819720/1‑146 (MQ=255) gAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTA‑GTTCACTTTCTGAACA‑TTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCtt < 2:131856/151‑1 (MQ=255) gAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTA‑GTTCACTTTCTGAACA‑TTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCtt < 1:866472/151‑1 (MQ=255) aGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTA‑GTTCACTTTCTGAACA‑TTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCttt < 1:680730/151‑1 (MQ=255) aaataaaAGATCTCCATCTTGTAATTTGTGGCGGTTTA‑GTTCACTTTCTGAACA‑TTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTtga < 2:1124915/150‑1 (MQ=255) aataaaAGATCTCCATCTTGTAATTTGTGGCGGTTTA‑GTTCACTTTCTGAACA‑TTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACGCCACTTTCATTTGGCTTtgatg < 1:695597/151‑1 (MQ=255) aataaaAGATCTCCATCTTGTAAGTTGTGGCGGTTTA‑GTTCACTTTCTGAACA‑TTATAGAAACCGAATATCGTTTTGATCTACATTGCCAGCACTTACAGAACTAATGCGTAGTATTGGATGACCAACACCTCTGTCATTTGGCGTtgatg < 1:136909/151‑1 (MQ=255) aaaaGATCTCCATCTTGTAATTTGTGGCGGTTTA‑GTTCACTTTCTGAACA‑TTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGaaa < 1:812565/151‑1 (MQ=255) ctcCATCTTGTAATTTGTGGCGGTTTT‑TTTTACTTTCTGAACA‑TTCTTGAAACCGCATATCGTTTTTATTTACATTGGCAGCACCCACAGAAATAATACGGAGTATTTGGTGAACCACACCCCTTTCATTTTGCtttttttgaaaaaccat > 2:184944/1‑137 (MQ=255) ctcCATCTTGTAATTTGTGGCGGTTTA‑GTTCAACTTTTTAACACTTCT‑CATAAAAAATATTGGTTTGATTTACATTGCCAATACATTCAGAAATAAAACGTAATTTTGGTTGACCACCACCACTTTCTTTTGTCTTTGTTTAAAAAACAtt > 1:124648/1‑151 (MQ=255) ccATCTTGTAATTTGTGGCGGTTTA‑GTTCACTTTCTGAACA‑TTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAGCTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTa < 1:927916/150‑1 (MQ=255) ccATCTTGTAATTTGTGGCGGTTTA‑GTTCACTTTCTGAACA‑TTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCa < 2:923472/147‑1 (MQ=255) tGTAATTTGTGGCGGTTTA‑GTTCACTTTCTGAACA‑TTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTaa < 2:885298/149‑1 (MQ=255) tgtgGCGGTTTA‑GTTCACTTTCTGAACA‑TTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTa < 2:239032/150‑1 (MQ=255) tgGCGGTTTA‑GTTCACTTTCTGAACA‑TTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCGCTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAag < 1:19370/150‑1 (MQ=255) cGGTTTA‑GTTCACTTTCTGAACA‑TTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAagatag < 1:450053/151‑1 (MQ=255) ggTTTA‑GTTCACTTTCTGAACA‑TTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAagataga < 2:1051073/151‑1 (MQ=255) ggTTTA‑GTTCACTTTCTGAACA‑TTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAagat > 2:646834/1‑148 (MQ=255) tA‑GTTCACTTTCTGAACA‑TTCTAGAAACCGAATATCGTTTTGATCTACAAGGCCAGCGCGTACAGAACTAAGGCGTAGTATGGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTGAAGATAGAtt < 1:997562/149‑1 (MQ=255) gTTCACTTTCTGAACA‑TTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCaaa < 2:155885/151‑1 (MQ=255) cACTTTCTGAACA‑TTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAAtt < 1:508136/151‑1 (MQ=255) | TAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTA‑GTTCACTTTCTGAACA‑TTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATT > NC_000913/4580488‑4580784 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |