Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,580,6340CT38.6% 86.0 / 18.2 59E277K (GAA→AAA) hsdSspecificity determinant for hsdM and hsdR
Reads supporting (aligned to +/- strand):  ref base C (6/29);  new base T (22/0);  total (30/29)
Fisher's exact test for biased strand distribution p-value = 1.08e-10
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATT  >  NC_000913/4580488‑4580784
                                                                                                                                                   |                                                                                                                                                       
tAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCa                                                                                                                                                        >  2:158951/1‑148 (MQ=255)
 aaTCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGATTATGTTACttt                                                                                                                                                    >  2:136955/1‑151 (MQ=255)
  atctatttctaataatTTTATCATCATATAACAAATTTTTATTTTATAATTTTTTCAATAAACTACAAACACCATCAAATTCTAAACTTCCTTTATATCTAATAAATAAAACATCTCCATCTTGTAATTTGTGTGGGTTTAGTTCAGtt                                                                                                                                                     <  1:350077/139‑1 (MQ=255)
      aGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTTGTTTACttt                                                                                                                                                    >  2:55430/1‑146 (MQ=255)
        cTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTATTTCACttttttaa                                                                                                                                               >  2:668442/1‑144 (MQ=255)
         tCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTTGTTTACTTTTTTAACa                                                                                                                                             >  2:722041/1‑150 (MQ=255)
          cGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACa                                                                                                                                             <  2:924880/149‑1 (MQ=255)
            aaTAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTTGTTTTCttttttgatctttt                                                                                                                                         >  1:267792/1‑140 (MQ=255)
            aaTAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTTGTTTACttttttaa                                                                                                                                               >  1:62087/1‑140 (MQ=255)
             aTAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTGTCAATAACCCACAAACACCAACAAATTCTATACTTCCGTTTTAGCAAGTAAAGAAAAGATCTCCATCTTATAATTTGTGGGGGGTTAGTTCACTTTCTGAACAtt                                                                                                                                          <  1:597788/148‑1 (MQ=255)
                     aTCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGa                                                                                                                               <  2:437369/151‑1 (MQ=255)
                          gATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAatat                                                                                                                           <  1:33324/150‑1 (MQ=255)
                            tataGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTTTTTTACTTTTTTAACAATTTAGAAAACGCAAATCGtt                                                                                                                       >  2:357499/1‑151 (MQ=255)
                               aGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGtttt                                                                                                                     <  1:313294/151‑1 (MQ=255)
                                gCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTATTTTACTTTTTTAAAAATCTAAAAAACCAAAATCGtttt                                                                                                                     >  2:1036373/1‑150 (MQ=255)
                                 cAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGGTTACATTAACTTTTGAACCTTTTAGAAAcctgaattacct                                                                                                                       >  1:131811/1‑137 (MQ=255)
                                       ttGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTTGTTTACTTTTTTAAAATTCTAGAAACCGAAAATAGTTTTTATCt                                                                                                                >  2:694403/1‑148 (MQ=255)
                                          aTGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTTGTTCACTTTTTTGAAAATCTAGAAAACGAATATCGTTTTTAttt                                                                                                                >  2:991718/1‑143 (MQ=255)
                                            gttgtAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTTGTTTACTTTTTTAACATTCTAAAAAACGAATATCGTTTTTATTTACATgggc                                                                                                        >  2:49787/1‑149 (MQ=255)
                                              tgtAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCa                                                                                                       <  2:272192/150‑1 (MQ=255)
                                                tAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTTTTTTACTTTTTTTACATTTTTTAAAACCAATATAGttttttt                                                                                                                  >  1:558978/1‑134 (MQ=255)
                                                 aaTTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTTGTTTTCTTTCTTAAAATTCTAGAAAACCAATATCGTTTTGATCTACATTGCCAGc                                                                                                     >  2:1065590/1‑149 (MQ=255)
                                                 aaTTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCAc                                                                                                   <  2:606966/151‑1 (MQ=255)
                                                    tttttCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTACTTTGTGGCGGCTTTCTTTACCCTCTCAAAATTCTCAAAACCCAACATCTTTTTTATCTAcctcccctcc                                                                                                     >  1:337700/1‑137 (MQ=255)
                                                      tttCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTAc                                                                                               <  1:735254/150‑1 (MQ=255)
                                                           aTAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGGTTACTTTCTTAAAATTCTAGGAACCGAATATTGTTTTGTTCTTCAAGGCCCGCACCGACAGaa                                                                                           >  2:248264/1‑149 (MQ=255)
                                                                ccACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTTGTTTCCTTTTTTAACAATTTTGAAAACGAATATCGTTTTTATCTTCATAGCCACCACCTACAGAACTAATgg                                                                                    >  2:812973/1‑150 (MQ=255)
                                                                ccACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATg                                                                                     <  1:191220/150‑1 (MQ=255)
                                                                 cacaAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTTGTTTACTTTTTTAACATTCTAGAAAACGAATATAGTTTTTATCTACATGGCCCGCACGTACAGAAATAATGCg                                                                                   >  2:262160/1‑151 (MQ=255)
                                                                          caacaaATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTgg                                                                          <  2:290625/151‑1 (MQ=255)
                                                                                           ccGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACttt                                                         <  1:112873/151‑1 (MQ=255)
                                                                                            cGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTTGTTTACTTTTTTAACATTCTAGAAAACGAATATCGTTTTTATTTACATTGCCCGCACGTACAGAACTAAAGCGTAGGATTTGGTGACCAACAACACctt                                                         >  2:995788/1‑150 (MQ=255)
                                                                                             gTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTTGTTTACTTTTTGGACATTTTAGAAACCGAATATCGTTTTTATCTACATGGCCAGCACGGACAAAAATAAAGCGTAGTATTTGATGACCAACACCACtt                                                          >  2:73070/1‑148 (MQ=255)
                                                                                                ataGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTTGTTTACCTTTTTAACATTCTTGAAAACGAATATTGTTTTTATCTTCATGGCCAGCACGGACAGAACTAATTCGGAGTATTGGATGACCAACACCACCTTTAttt                                                    >  2:673705/1‑151 (MQ=255)
                                                                                                 taGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTTGTTTACTTTCTTAACATTTTAGAAAACGAAAATCGTTTTTATCTACATGGCCAGCACGTACAGAAATAATGCGTAGTATTTGGTGACCAAAACCACTTTCAttt                                                    >  2:271757/1‑150 (MQ=255)
                                                                                                  aGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTTGGTTAATTTTTTTAAATTTTAAAAAACTAATATCGTTTTTTTTTATATCGTTAGCACGTAAAAAAATAATGGGAAGGTTTGGATTGCCAACACCACtcttttt                                                     >  1:34808/1‑142 (MQ=255)
                                                                                                  aGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTgg                                                  <  2:511915/151‑1 (MQ=255)
                                                                                                  aGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGCTTATTTCCCTTTTTTAACATTCTATAAACCCAAAATCGTTTTTATCTACATTGTCCGCACCGACAGAAATAAAGCGTAGTATTTGGGGAACAACACCCCttttaattt                                                   >  2:765505/1‑144 (MQ=255)
                                                                                                     gAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTTGTTTACTTTTTGAACATTCTAGAAAACGAATATCGTTTTTATTTACATGGGCAGCACGTACAGAAATAATGCGTAGTATTTGATGACCAAAACCACTTTTATTTTGCtt                                               >  2:520074/1‑151 (MQ=255)
                                                                                                     gAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTTGTTGCCTTTTTGAACATTCTAGAAAACGAACATCGTTTTTTTTTACATGGGCACCCCGTGCAAAACCAATGCGTAGTAATCGATAACCCACACCCCatttattt                                                    >  2:819720/1‑146 (MQ=255)
                                                                                                     gAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCtt                                               <  2:131856/151‑1 (MQ=255)
                                                                                                     gAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCtt                                               <  1:866472/151‑1 (MQ=255)
                                                                                                      aGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCttt                                              <  1:680730/151‑1 (MQ=255)
                                                                                                         aaataaaAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTtga                                            <  2:1124915/150‑1 (MQ=255)
                                                                                                          aataaaAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACGCCACTTTCATTTGGCTTtgatg                                          <  1:695597/151‑1 (MQ=255)
                                                                                                          aataaaAGATCTCCATCTTGTAAGTTGTGGCGGTTTAGTTCACTTTCTGAACATTATAGAAACCGAATATCGTTTTGATCTACATTGCCAGCACTTACAGAACTAATGCGTAGTATTGGATGACCAACACCTCTGTCATTTGGCGTtgatg                                          <  1:136909/151‑1 (MQ=255)
                                                                                                             aaaaGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGaaa                                       <  1:812565/151‑1 (MQ=255)
                                                                                                                    ctcCATCTTGTAATTTGTGGCGGTTTTTTTTACTTTCTGAACATTCTTGAAACCGCATATCGTTTTTATTTACATTGGCAGCACCCACAGAAATAATACGGAGTATTTGGTGAACCACACCCCTTTCATTTTGCtttttttgaaaaaccat                                >  2:184944/1‑137 (MQ=255)
                                                                                                                    ctcCATCTTGTAATTTGTGGCGGTTTAGTTCAACTTTTTAACACTTCTCATAAAAAATATTGGTTTGATTTACATTGCCAATACATTCAGAAATAAAACGTAATTTTGGTTGACCACCACCACTTTCTTTTGTCTTTGTTTAAAAAACAtt                                >  1:124648/1‑151 (MQ=255)
                                                                                                                      ccATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAGCTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTa                               <  1:927916/150‑1 (MQ=255)
                                                                                                                      ccATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCa                                  <  2:923472/147‑1 (MQ=255)
                                                                                                                            tGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTaa                          <  2:885298/149‑1 (MQ=255)
                                                                                                                                   tgtgGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTa                  <  2:239032/150‑1 (MQ=255)
                                                                                                                                     tgGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCGCTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAag                <  1:19370/150‑1 (MQ=255)
                                                                                                                                        cGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAagatag            <  1:450053/151‑1 (MQ=255)
                                                                                                                                         ggTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAagataga           <  2:1051073/151‑1 (MQ=255)
                                                                                                                                         ggTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAagat              >  2:646834/1‑148 (MQ=255)
                                                                                                                                             tAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACAAGGCCAGCGCGTACAGAACTAAGGCGTAGTATGGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTGAAGATAGAtt         <  1:997562/149‑1 (MQ=255)
                                                                                                                                                gTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCaaa     <  2:155885/151‑1 (MQ=255)
                                                                                                                                                   cACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAAtt  <  1:508136/151‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                       
TAATCGAGCTCGAATAAGTTTATCAGGATATAGCAAATTTTGATGTTGTAATTTTTTCAATAACCCACAAACACCAACAAATTCTAAACTTCCGTTATAGCGAGTAAATAAAAGATCTCCATCTTGTAATTTGTGGCGGTTTAGTTCACTTTCTGAACATTCTAGAAACCGAATATCGTTTTGATCTACATGGCCAGCACGTACAGAACTAATGCGTAGTATTGGATGACCAACACCACTTTCATTTGGCTTTGATGAAAGACCATTACGTAATTCAGTTAAGATAGATTCAAAATT  >  NC_000913/4580488‑4580784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: