| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 599,576 | 0 | T | G | 46.8% | 104.8 / 34.8 | 80 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| Reads supporting (aligned to +/- strand): ref base T (5/37); new base G (35/2); total (41/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.20e-14 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACC > NC_000913/599426‑599725 | aaaCGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGggt < 1:705242/151‑1 (MQ=255) cGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑Ggggggg > 1:465311/1‑150 (MQ=255) gCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑Gggggggg > 1:1423957/1‑149 (MQ=255) cgacgaCTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATc < 2:828998/151‑1 (MQ=255) cgacgaCTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATc < 2:624493/151‑1 (MQ=255) gacgacTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGGGGTGATcc > 1:297705/1‑151 (MQ=255) gacTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGG‑GGGGGGGGGGTCCTg > 1:242654/1‑150 (MQ=255) gacTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATCCTGc < 2:649171/151‑1 (MQ=255) cTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGGGGGGGTCCTTCg > 2:1119493/1‑150 (MQ=255) cTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGGCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGG‑GGGggggtgggcc > 2:814152/1‑142 (MQ=255) tttAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATCCTGCg < 1:273639/149‑1 (MQ=255) tAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGAA‑GGGGGGGGGagtctacgacc > 1:934425/1‑140 (MQ=255) aaTCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGG‑GGGGGGGGGGTcccccgaacc > 2:595117/1‑142 (MQ=255) aTCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCgg < 2:33725/151‑1 (MQ=255) cacaTCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCGGc < 1:1014546/150‑1 (MQ=255) acaTCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCGGCaa < 1:1437870/151‑1 (MQ=255) caTCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCGGCaaa < 1:1086297/151‑1 (MQ=255) aTCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCGGCaaaa < 1:1199436/151‑1 (MQ=255) aTCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGGGGGGGTCCttaggccccggcaa > 2:1429228/1‑137 (MQ=255) gTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACg < 1:1446620/151‑1 (MQ=255) ttAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGG‑GGGGGGGGGGTCCTTCGGTCCGGCAAAAACGccc > 2:666971/1‑151 (MQ=255) tAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGccc < 1:677872/150‑1 (MQ=255) aaaaGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGGGGTGATCCTGCGATCCGGCAAAAACGccc > 1:1187807/1‑149 (MQ=255) aaaGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGGC‑GGGGGGGGGTCCCTCGGTCCCGGCAAAACCGcc > 2:702327/1‑148 (MQ=255) aaaGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCCAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGT‑GTGGTGGTGATCCTGCGATCCGGCAAAAACGCCCgag < 2:938817/151‑1 (MQ=255) ccAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGt < 1:614841/151‑1 (MQ=255) ccAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGGGGGGGGCCCGCGATCCCGCCAAAAAGCCCgaga > 1:1365437/1‑148 (MQ=255) ccAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGGGGGGATCCTGCGATCCGGCAAAAACGCCCgag > 1:92689/1‑147 (MQ=255) cAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGGGGGGATCCTGCGATCCGGCAAAAAAGCCCGGGAAGTg > 1:273836/1‑151 (MQ=255) gAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGA‑GGGGGGGGGATCCTGCGATCCGGCAAAAACGCCCCAGAAGGGATcg > 1:1407645/1‑151 (MQ=255) aaaaTGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGGGGGGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATc > 1:111771/1‑149 (MQ=255) aaaTGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGG‑GGGGGGGGGGTCCTGGGATCCGGGAAAAAAGCCCggggagggaatg > 2:125823/1‑138 (MQ=255) aaaTGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATcgcc < 2:1105872/151‑1 (MQ=255) aaTGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGG‑GGGGGGGGGGTTCTGCGATCCGGGAAAAAAGCCCgaggaggg > 1:453661/1‑142 (MQ=255) cccGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGCGGGGGGGGGGATCC‑GCGCTCCGGCAAAAAAACACGAGAAGTGTGCGccggcggg > 2:1244090/1‑145 (MQ=255) ccGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGG‑GGGGTGGGGTTCCTTCGATCCGGCAAAAAAGCCCGAGGAGGGGTCGGCGGCGGGAAgg > 2:340150/1‑150 (MQ=255) cGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGGGGGGATCCTGCGATCCGGCACAAACGCCCGAGAAGTGATTgccgcc > 2:123557/1‑142 (MQ=255) gTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGGGATCCTGCTCTCCGGCAAAAACGCCCCGGAAGCGATGGGCGCCGTGAAGGAc > 1:534065/1‑150 (MQ=255) tATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGGGGGGATCCTGCGATCCGGCAAAAACGCCCCAGAAGAGATCTCCGCCGGGAAGGAaaaa > 1:1088678/1‑150 (MQ=255) aTCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGCAGTGGC‑GGGC‑GGGGGGGGGATCCTGCGCTCCGGCCAAAAAGCCCGCGAAGTGGATGCCGCCCTGAAGGACAAAc > 1:491067/1‑150 (MQ=255) gcgcGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACt < 1:1398867/147‑1 (MQ=255) gcgcGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGGGGGGGTCCTGCGGTCCCGCAAAAAAGGCCGAGAAGTGGACGCCGGCCGGAAGGGGAAAcc > 2:621010/1‑146 (MQ=255) cgcgATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑CGGGCGGTGATCCTGCGGTCCCGCAAAAAACCCCCAGAGCGGGTCCCCCCCGGGAAGGACAAACtcg > 2:179219/1‑146 (MQ=255) gcgATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGGGGTGATCCTGCGATCCGGGCAAAAAGCCCGAAAAGGGATAGCCGCCCGGAAGGACAAACTGGaaa > 1:1379443/1‑150 (MQ=255) gATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGc < 2:372506/151‑1 (MQ=255) aTGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCCGGAAAAACGCCCGCGAAGGGATCGCCGCCGTGAAGGACAAACTGGAAAAGc > 1:972618/1‑150 (MQ=255) tGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGG‑GGGGGGGGGGTCCCGCGATCCGGCAAAAAACCCCGAGAAGGGATCGGCGCCGTGGAGGACAAACTGGAAAAGc > 2:1044690/1‑149 (MQ=255) ttGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGa < 1:20350/150‑1 (MQ=255) tGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGaa < 1:118900/150‑1 (MQ=255) cGAAGGTCCCGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGACGTGGC‑GGGC‑CGGGGGGTGGCCCTGGGGTGCGGCCAAAACACACCAGAAGAGATCGCCGCCCGGGAGGGCAAAACGGAAAAGCTGaaa > 2:905469/1‑149 (MQ=255) cGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGGGGTGATCCTGCGATCCGGCAAAAACGCCCGAGGAGGGATCGCCGCCCTGAAGGACAAACTGGAAACGCTGaaa > 1:670476/1‑149 (MQ=255) cGAAGGTCCAGATTGGCCCGGAGATGCGCC‑GGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGGGGGGAGCCTGGGATCCGGCAAAAAAGCCCGAGAAGGGAACGCCGCCGTGAAGGGCAAAAAGGGAACCGTGaaa > 1:1178368/1‑148 (MQ=255) gAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAagt < 2:71536/151‑1 (MQ=255) aaGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAagta < 1:517069/151‑1 (MQ=255) aaGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGGGGGGATCCTGCGATCCGGCAAAAAAGCCCGAGAAGGGAACGCCCCCGTGGAGGACAAACTGGAAAAGCTGGAAag > 2:1281141/1‑149 (MQ=255) aGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAagtag < 1:1059934/151‑1 (MQ=255) tCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGGGGGGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCGCCGGGAAGGACAAACTGGAAACGCTGAAAAGTAGTc > 1:1387122/1‑150 (MQ=255) ccAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTg < 1:730301/151‑1 (MQ=255) ggCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAg < 1:1357151/151‑1 (MQ=255) ggCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGGGGTCCTGCGATCCGGCAAAAAAGCCCGAGAAGGGATCGCCGCCGTGAAGGACAAACTGGAAACGCCGAAAAGTAGTCTGCCGGa > 2:1304767/1‑149 (MQ=255) cccGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGc < 1:766133/151‑1 (MQ=255) gcgcCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGAt < 2:465148/150‑1 (MQ=255) gcCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGGGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAAAGCTGAAAAGTAGTCTGCCGGAAGGCGTGGGGATa > 1:639011/1‑149 (MQ=255) gcCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGGGGGGGTCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCGCCGGGAAGGACAAACTGGAAACGCTGAAAAGTAGGCTGCCGGGAGGCGGGGGGGTAGt > 1:675222/1‑151 (MQ=255) ggaaTTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGGGGGGGGCCTGCGATCCGGGAAAAACGCCCGCGAAGGGGTCGCCGCCGTGGAGGACAAACTGGAAAAGCTGAAAAGTAGTTTGCCGGGAGGCGTGGGGATAGTTaaa > 2:1294579/4‑148 (MQ=255) cATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTacaaca < 2:560697/151‑1 (MQ=255) cATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGGGGTGATCCTGCGATCCGGCAAAAAAGCCCCAGAAGGGATCGCCGCCGTGTAGGGCAAAATGGGAAAGCTGAAAAGGAGTCTGCCGGGAGGGGGGGGGATAATTtcaac > 1:168618/1‑150 (MQ=255) aTTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGGGGGGATCCTGCGATCCGGCAAAAAAGCCCGAGAAGTGATCGCCGCCGCGAAGGACAAAATGGAAAAGCTGAAAAGTAGTCTGCCGGAAGGGGGGGAGATAGTTacaaca > 1:944126/1‑150 (MQ=255) tGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGGGGTGTTCCTGCGCTCCGGCGAAAACGCCCCAGAAGAGATCCGCGCCGTGAAGGACAAACCGGAAACGCTGAAAAGAAGGCTGCCGGAAGGCGGGGCGGTAGGTacaacaaa > 1:667890/1‑148 (MQ=255) gAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATc < 1:595302/151‑1 (MQ=255) gAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATc < 1:353522/151‑1 (MQ=255) aaaCGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGAt < 1:680331/145‑1 (MQ=255) aaaCGGCGAAGACGAGGGGGC‑GGGA‑GGGGGGGTGATCCTGCGATCCGGCAGAAGCGCCCGAGAAGTGATCGGCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTATAGATAGTTACAGCATACGATCGca < 2:852902/149‑1 (MQ=255) aCGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGcagcca < 1:21218/151‑1 (MQ=255) ggcgaaggcgaaGTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGcagccagc < 2:1101566/151‑1 (MQ=255) ggcgaaggcgaaGTGGC‑GGGC‑GGGGGGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGGGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGGAGTCTGCCGGAAGGCGGGGAGATAGTTACAACATACGATCGcagccag > 1:1040915/1‑150 (MQ=255) aaggcgaagTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCAt < 1:360307/151‑1 (MQ=255) ggcgaagTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTg < 1:1247630/151‑1 (MQ=255) cgaagTGGG‑GGGC‑GGGGGGGTGATCCTGCGATCCGGCAAAAGCGCCCGAGAAGTGATGGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGAc < 2:1249757/151‑1 (MQ=255) cgaagTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGAc < 1:81381/151‑1 (MQ=255) ggc‑gggc‑gGGGTGGTGACCCTGCGATCCGGCAAAACCGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCgcgc < 2:1178009/150‑1 (MQ=255) c‑gggc‑gggGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCAt < 2:111751/151‑1 (MQ=255) gggc‑gggGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCAt < 2:187789/150‑1 (MQ=255) gggTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACa > 1:745248/1‑150 (MQ=255) tggtgATCCTGCGATCCGGCAAAACCGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAAcc < 1:397838/150‑1 (MQ=255) | AAACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGC‑GGGC‑GGGGTGGTGATCCTGCGATCCGGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACC > NC_000913/599426‑599725 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |