| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 925901 = | 45 (0.630) | 10 (0.140) +C |
9/296 | 10.1 | 20.5% | noncoding (71/88 nt) | serW | tRNA‑Ser |
| ? | NC_000913 | = 1097399 | 33 (0.460) | intergenic (+570/+166) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GTTCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTC‑G‑AACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATA‑GGGAGTTGGAGTAAAACGGTCAAGAAG > NC_000913/925753‑926047 | gTTCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc < 2:131493/151‑1 (MQ=255) cACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTC‑G‑aa < 2:109949/151‑1 (MQ=255) gCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGGTT‑G‑AAACCCCCAAACGtt > 1:238239/1‑151 (MQ=37) aGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGTTT‑G‑TACCCCCCATACGt > 1:136305/1‑148 (MQ=255) gAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTC‑G‑AACCCCCGATACGTTGCCGtata < 2:400644/151‑1 (MQ=255) aaaTTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGTTC‑G‑AACCCCCCATACGTTGCCGtgta > 1:185126/1‑150 (MQ=255) aaaTTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTC‑G‑AACCCCCGATACGTTGCCGTATac < 1:852744/151‑1 (MQ=255) ttCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGGTT‑G‑AAaccccccc > 2:1124818/1‑131 (MQ=37) caGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGTGGGGGGGGGTC‑G‑GACCCCCGGTAACGTGCCGTTTacaaccct > 1:812397/1‑145 (MQ=25) aTACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGTTT‑G‑AACCCCCCACACGTTTGCGTATACACAAATTCCAAGCg > 2:576033/1‑150 (MQ=21) cTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTC‑G‑AACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGc < 1:478391/150‑1 (MQ=255) cTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGAGTCGG‑AACCCCCGGCGCG‑TGGCGTATACACACCTTTCAgg > 2:824215/1‑145 (MQ=21) aCCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTC‑G‑AACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCtt < 2:442273/151‑1 (MQ=255) cccGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTC‑G‑AACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCtt < 2:738956/150‑1 (MQ=255) cccACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGGGGGGGGGGGTC‑G‑AAACCCCCAAACGTTGCCGTATACACACTTTCCAGGCGGGCTCCTTCAGcc > 1:205051/1‑151 (MQ=18) ccaccaTGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGAGAGGGGGGGGTTT‑G‑AAACCCCCAGACGTTTTCCTATACACACTTTCCCGGGGGGCTCCtttcgcc > 2:505035/1‑145 (MQ=18) aTGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGTTC‑G‑AACCCCCCATACGTTTCCGTATACACACTTTCCAGGCGGGGTCCTTCAGCCAccccg > 1:289378/1‑147 (MQ=18) aCTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGGGGGGGGGAGTT‑G‑AACCCCCCCTACGCTGCCGTATACACACTTTCCCCGCGTGCTCCTTCAACCCCTCCGGCAcc > 1:810463/1‑150 (MQ=17) aaaaTGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGGTT‑G‑AAACCCCCCAACGTTGCCGCATACAAACTTTTCCGGCGGGTCCCCTCCGCCACCCCGGCACCTCCCCCAAATTTTTTGCt > 2:203118/1‑150 (MQ=9) cGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGAGAGGGGGGGGGTC‑G‑AACCCCCCCTACGTTTCCGTATAAACACCTTTCCTGCGGGCTGCTTCCGGCCCCCCGGCACCCCCCCAAAATGttttttttacaca > 2:575595/1‑141 (MQ=2) gAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTC‑G‑AACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAAcc < 1:191593/151‑1 (MQ=255) aaaaGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGTTT‑C‑AAACCCCGACACGTTTCCGTATACACACCTTTCAGGCGTGGTCCCTCAGCCCCCCGGACACCCCCCCCAAATGtttttttaacaca > 2:750629/1‑135 (MQ=2) cTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGTTT‑G‑CAACCCCCACACGTTTTCGCATAAACACCTTCCCGGCGTGCTCCTTCCCCCACCCCGGCACCTCCCCCAAATTTTTTTCTTCCAAACCTCATCGgggg > 2:935275/1‑151 (MQ=9) ttCGTACGAGCTCTTCTTTAAATATGGCGGGGGGGGGGGGGTTT‑G‑GAACCCCCCTACGTTTCCGTATAAAAACCTTTCAGGGGGGCTCCTTTACCCACCCGGACACCCCACCCAAATGTTTTTTTACCCAACCCCCTGGGGGGGAACgggg > 2:670973/1‑151 (MQ=2) cGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGTTC‑G‑AACCCCCCATACGTTTCCGTATACACACTTTCCAGGCGGGCTCCTTCCGCCACCCCGACACCCCACCCAAATTTTTTGTTACCAAAACCCATGGGGGGGAACGGGgcg > 1:984281/1‑151 (MQ=14) gTACGAGCTCTTCTTTAAATATGGCGGGGAGGGGGGGGATC‑G‑AACCCCCCCTACGTTGCCGCATAAACACCTTTCAGGGGGGCTCCCTTAGCCACCCGGACAACTCTCCAAATTGTTTTTCTCCCCAACCCCCTGGGTGGCAACgggg > 1:264162/1‑148 (MQ=9) tACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGTTC‑G‑GAACCCCCACACCTTTTCGTATACACACTTTCCAGGCGTGCTCCCTCCGCCACTCCGACACCCCCCCCAAATATTTTTCTTCCAAACCCCATTGGTGGCAACGGGgggc > 2:453492/1‑150 (MQ=9) tACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGGTC‑G‑AACCCCCCATACGGTGCCGGATAAACACTTTCCAGGCGGGCTCCTTCCGCCCCCCGGACACCCCACCAAAATGTTTTTCTACCCAACCCCATTGGGGGCAACgggggg > 1:147452/1‑147 (MQ=14) aCGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGTTC‑G‑GACCCCCGATACGGTTGCGTATACACACCTTTCCGGCGTGCCCCTTCAGCCCCCCGGGCACCCCACCAAAATGTTTTTTTACCAAAACTCCTGGGGGGCAACgggg > 1:940597/1‑146 (MQ=9) aCGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTC‑G‑AACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGct < 1:722275/150‑1 (MQ=255) cGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGGTT‑G‑GACCCCCCATACGTTTCCGTATAAACACTTTTCCGGCGGGGTCCTTCCACCACCCGGGCACCCCACCAAATTGTTTTTCTTCCCAACCACCTGGGGGGGAACGGGGGGccac > 2:281427/1‑151 (MQ=2) tcttTAAATATGGCGGTGAGGGGGGGATTC‑G‑AACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATA‑gg < 1:117501/149‑1 (MQ=255) tcttTAAATATGGCGGTGAGGGGGGGATTC‑G‑AACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATA‑g < 1:221154/148‑1 (MQ=255) ttAAATATGGCGGTGAGGGGGGGATTC‑G‑AACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATA‑GGGa < 2:1018106/148‑1 (MQ=255) ttAAATATGGCGGTGAGGGGGGGATTC‑G‑AACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATA‑GGGAg < 1:698214/149‑1 (MQ=255) tAAATATGGCGGTGAGGGGGGGATTC‑G‑AACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATA‑GGGAGtt < 2:238190/150‑1 (MQ=255) aaTATGGCGGTGAGGGGGGGATTC‑G‑TACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATA‑GGGAGTTGGa < 2:136274/151‑1 (MQ=255) tatGGCGGTGAGGGGGGGATTC‑GAAACCCCCGA‑ACGTTGCCGTATAAAAACTTTTCAGGGATGGGCCTTCAGCCACCCGGACACCCCCCCCAATTGTTTTGCTACCAAACCCCATGGGGGGGAACGGGGGGCTACTATATGGGGGTTgag > 2:484834/1‑148 (MQ=12) gTGAGGGGGGGATTC‑G‑AACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATA‑GGGAGTTGGAGTAAAACgg > 1:692432/1‑151 (MQ=255) tGAGGGGGGGATTC‑G‑AACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATA‑GGGAGTTGGAGTAAAACGGt > 2:648985/1‑151 (MQ=255) gAGGGGGGGATTC‑G‑AACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATA‑GGGAGTTGGAGTAAAACGGTc < 2:64378/151‑1 (MQ=255) ggggATTC‑G‑AACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATA‑GGGAGTTGGAGTAAAACGGTCaagaa < 1:341371/151‑1 (MQ=255) ggggATTC‑G‑AACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATA‑GGGAGTTGGAGTAAAACGGTCaaga > 1:229007/1‑150 (MQ=255) ggggATTC‑G‑AACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGACGCTACTATA‑GGGAGTTGGAGTAAAACGGTCaagaa < 2:523662/151‑1 (MQ=255) gggATTC‑G‑AACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATA‑GGGAGTTGGAGTAAAACGGTCaagaag < 2:876530/151‑1 (MQ=255) | GTTCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTC‑G‑AACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATA‑GGGAGTTGGAGTAAAACGGTCAAGAAG > NC_000913/925753‑926047 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |