Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503–1979270	1979278	9–776	87 [0]	[1] 85	insB1–insA	insB1, insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	79 (1.040)	64/282	0.2	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
	?	NC_000913	1979279 =	0 (0.000)					intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

GCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATA  >  NC_000913/1979129‑1979426                                                                                                                                                       |                                                                                                                                                     atagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgt                                                                                                                                                      >  1:1047926‑M2/151‑151 (MQ=255)   agaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgta                                                                                                                                                     >  2:604773‑M2/149‑150 (MQ=255)     aaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgtata                                                                                                                                                   >  2:1040287‑M2/147‑150 (MQ=255)     aaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                                                                                  <  2:896138‑M2/5‑1 (MQ=255)     aaatgggtctttacacttagctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacgaaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgtata                                                                                                                                                   <  2:49814‑M2/4‑1 (MQ=255)      aatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgtata                                                                                                                                                   >  2:1060422‑M2/146‑149 (MQ=255)      aatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAg                                                                                                                                                 <  1:405179‑M2/6‑1 (MQ=255)       atgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGt                                                                                                                                                >  1:168073‑M2/145‑151 (MQ=255)         gggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTc                                                                                                                                               <  1:1077591‑M2/8‑1 (MQ=255)          ggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAt                                                                                                                                             >  1:60048‑M2/142‑151 (MQ=255)               ttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAc                                                                                                                                           <  2:1126184‑M2/12‑1 (MQ=255)               ttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAc                                                                                                                                           <  2:1255184‑M2/12‑1 (MQ=255)                tacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttt                                                                                                                                        <  1:509243‑M2/15‑1 (MQ=255)                tacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttt                                                                                                                                        <  2:232518‑M2/15‑1 (MQ=255)                  cacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgt                                                                                                                                     >  1:935918‑M2/134‑151 (MQ=255)                         ctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt                                                                                                                              >  1:42289‑M2/127‑151 (MQ=255)                         ctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt                                                                                                                              >  2:19358‑M2/127‑151 (MQ=255)                           aagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgtg                                                                                                                             <  1:40075‑M2/26‑1 (MQ=255)                           aagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgtg                                                                                                                             <  1:995178‑M2/26‑1 (MQ=255)                           aagatttttcctaaatcgacgcaactgtactcgtcaatacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacgcaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGCgtg                                                                                                                             <  2:486546‑M2/26‑1 (MQ=255)                              atttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAtt                                                                                                                         >  1:1090016‑M2/122‑151 (MQ=255)                               tttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTCTGGGTgtagt                                                                                                                         <  2:727614‑M2/30‑3 (MQ=255)                               tttttcataaatcgacgcaactgtactcgtaactacacgcatatacaacagaggagggctgcgattttcaataatgcgtgatgcagatcacacaagacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAtt                                                                                                                         >  2:734374‑M2/121‑150 (MQ=255)                                  ttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggcgggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCa                                                                                                                      >  2:143927‑M2/118‑150 (MQ=255)                                     ctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCt                                                                                                                  >  1:239959‑M2/115‑151 (MQ=255)                                       aaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTg                                                                                                                 <  1:1283261‑M2/38‑1 (MQ=255)                                        aatcgactcgactgtactcgtcactgcacgcacatacaacggagggaggctgcggttttcaataatgcgtgatgcagatcacacataacactcaattacttaacataaatgTATAAGTCATATTTTTGTTTTGCGTGTATTTc                                                                                                                       <  2:899757‑M2/32‑1 (MQ=255)                                         atcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGTGTGTATTTCAATCTGTT‑a                                                                                                             <  2:249023‑M2/41‑1 (MQ=255)                                         atcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑a                                                                                                             <  2:330687‑M2/41‑1 (MQ=255)                                           cgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑aa                                                                                                            <  2:347862‑M2/42‑1 (MQ=255)                                           cgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑aa                                                                                                            >  1:379801‑M2/109‑150 (MQ=255)                                           cgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑aa                                                                                                            <  2:747045‑M2/42‑1 (MQ=255)                                           cgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTGTTGTTTTGGGTGTATTTCAATCTGTT‑aaa                                                                                                           <  1:1215067‑M2/43‑1 (MQ=255)                                            gacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑aaa                                                                                                           >  2:10905‑M2/108‑150 (MQ=255)                                              cgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑aaaa                                                                                                          >  1:1037601‑M2/106‑149 (MQ=255)                                                  actgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGtttt                                                                                                    >  2:377833‑M2/102‑151 (MQ=255)                                                     gtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattgcttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTc                                                                                                  <  1:877984‑M2/52‑1 (MQ=255)                                                             cactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTcgctacgct                                                                                          >  2:325059‑M2/91‑150 (MQ=255)                                                              actacacgcacatacaacggaggggggctgcgattttcaataattcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTTTTTTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTag                                                                                        <  1:1043270‑M2/62‑1 (MQ=255)                                                              actacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAATTTTTTCGCTACGCTag                                                                                        <  2:962761‑M2/62‑1 (MQ=255)                                                              actacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTcgctacgct                                                                                          >  2:70140‑M2/90‑149 (MQ=255)                                                              actacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTag                                                                                        <  1:550130‑M2/62‑1 (MQ=255)                                                                 acacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTagcaa                                                                                     <  1:384723‑M2/65‑1 (MQ=255)                                                                    cgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTagcaagca                                                                                  <  1:269367‑M2/68‑1 (MQ=255)                                                                          tacaacggaggggtgctgcgattttcattaatgcgtgatgcagatcacactaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTAGGTGTATTTCAATCCGTT‑AAAAAGTTTTTCGCTTCGCTAGCAAGCaaaaa                                                                              <  2:716337‑M2/72‑1 (MQ=255)                                                                           acaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATg                                                                            <  1:1099412‑M2/74‑1 (MQ=255)                                                                            caacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaagcacttaattacttaacataaaggTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAGCTCTT‑AAAAAGTTTTTCGCtacgctcgcaagcaatacttaa                                                                          <  2:1085246‑M2/76‑8 (MQ=255)                                                                            caacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGa                                                                           >  2:1212948‑M2/76‑150 (MQ=255)                                                                             aacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa                                                                         <  1:460552‑M2/77‑1 (MQ=255)                                                                              acggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAAc                                                                        >  1:1205341‑M2/74‑151 (MQ=255)                                                                                 gaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAacatg                                                                     <  2:1137952‑M2/81‑3 (MQ=255)                                                                                            cgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa                                                          <  1:163992‑M2/92‑1 (MQ=255)                                                                                             gattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt                                                         >  2:439446‑M2/59‑151 (MQ=255)                                                                                             gattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt                                                         <  1:615546‑M2/93‑1 (MQ=255)                                                                                              attttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg                                                        <  2:891988‑M2/94‑1 (MQ=255)                                                                                              attttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg                                                        >  2:954531‑M2/58‑151 (MQ=255)                                                                                                 ttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATggg                                                      >  2:963910‑M2/55‑150 (MQ=255)                                                                                                    aataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGt                                                  >  1:1233799‑M2/52‑151 (MQ=255)                                                                                                    aataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAAGCGAAATGGGATGt                                                  <  1:981977‑M2/100‑1 (MQ=255)                                                                                                       aatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgc                                               <  2:1113129‑M2/103‑1 (MQ=255)                                                                                                        atgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgcg                                              <  1:1040931‑M2/104‑1 (MQ=255)                                                                                                              gatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAAGTTTTTCGCTACGCTATCAAGCAAAAATGAAACATGAATAATCGAAATGGGATGTTGCGcgca                                          <  1:814556‑M2/109‑1 (MQ=255)                                                                                                              gatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGt                                        <  1:1265839‑M2/110‑1 (MQ=255)                                                                                                                 gcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCa                                      <  1:618209‑M2/112‑1 (MQ=255)                                                                                                                   agatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaaa                                   <  2:5606‑M2/115‑1 (MQ=255)                                                                                                                   agatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaa                                    >  1:631594‑M2/37‑150 (MQ=255)                                                                                                                        acacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACt                              <  2:1022204‑M2/120‑1 (MQ=255)                                                                                                                          acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCa                            <  2:168007‑M2/122‑1 (MQ=255)                                                                                                                                cactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTa                       >  2:1100594‑M2/24‑150 (MQ=255)                                                                                                                                 actcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTaaa                     <  1:158584‑M2/129‑1 (MQ=255)                                                                                                                                 actcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTaaa                     <  2:643299‑M2/129‑1 (MQ=255)                                                                                                                                    caattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaataa                  <  1:937386‑M2/132‑1 (MQ=255)                                                                                                                                      attacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatc                >  1:394531‑M2/18‑151 (MQ=255)                                                                                                                                      attacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatc                >  1:1154348‑M2/18‑151 (MQ=255)                                                                                                                                       ttacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaataat                 >  2:618165‑M2/17‑149 (MQ=255)                                                                                                                                         acttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGCAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcat              <  1:1023256‑M2/136‑1 (MQ=255)                                                                                                                                          cttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcat              <  2:1047282‑M2/136‑1 (MQ=255)                                                                                                                                           ttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTg           >  1:690987‑M2/13‑151 (MQ=255)                                                                                                                                             aacATAAATGTATAAGTCATACTATAGTTGTGAGTGTATTTCAATCTGTT‑AAAAAGTGTGTCGCTTCGCTAGCAAGCAAAAATGAAACAGGAATAATGGAAATGGGAGGTTGCGCGCAGTCAAAATAGCTCACCGTAGATAatcat              <  2:279491/144‑1 (MQ=255)                                                                                                                                              acataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCt         >  2:174080‑M2/10‑150 (MQ=255)                                                                                                                                                  aaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataaa    <  2:655838‑M2/146‑1 (MQ=255)                                                                                                                                                  aaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataa     <  1:35402‑M2/145‑1 (MQ=255)                                                                                                                                                  aaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataa     <  1:90146‑M2/145‑1 (MQ=255)                                                                                                                                                  aaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataa     <  2:239848‑M2/145‑1 (MQ=255)                                                                                                                                                     tgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataaata  >  1:747089‑M2/3‑150 (MQ=255)                                                                                                                                                       |                                                                                                                                                     GCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTT‑AAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATA  >  NC_000913/1979129‑1979426

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑