New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	961903 =	66 (1.000)	9 (0.140)	6/296	10.1	11.4%	intergenic (+19/‑92)	cmk/rpsA	cytidylate kinase/30S ribosomal subunit protein S1
	?	NC_000913	2741203 =	74 (1.130)					intergenic (‑53/‑157)	aroF/yfiL	3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible/lipoprotein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

GGGCGGGTTTCGATTTCTTTTAAGGACTCTTCAAAGAGTTGAGCAAAAGATTCAGTCATGTTTAATCTTCAGGTTTATATTTAACGTCCACCTGGCTCCATGCCGGATGGGGTTGTTTAACATACCCGCTGTCATTCCATTGCAACGGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/962053‑961903 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gACGTAACGATAACACATAAAGTAAAGTTTTCAATCCATATTTCGTACATTTTTATTTACACAGGCAATTTAGTCGCGCTTTCAACCCTTACCTCTGTATAGATAAATTTACACTCCCTTTGAAAACAATCCGCTATGCTTTGAAAAAGGA  >  NC_000913/2741203‑2741352                                                                                                                                                                                                                                                                                                               GGGCGGGTTTCGATTTCTTTTAAGGACTCTTCAAAGAGTTGAGCAAAAGATTCAGTCATGTTTAATCTTCAGGTTTATATTTAACGTCCACCTGGCTCCATGCCGGATGGGGTTGTTTAACATACCCGCTGTCATTCCATTGCAACGGGGG                                                                                                                                                        >  1:848802/1‑151                                                    agatTCATGTTTAATCTTCCGGTTTATATTTAACGTCCACCTGGCTCCATGCCGGATGGGGTTGTTTAACATACCCGCTGTAATTCCATTGCAACGGGGGACGTAACGATAACACCTAAAGTAAAGTTTTCAATCCATATTTCGTCAATTT                                                                                                     >  1:693759/5‑151                                                       tTCATGTTTAATCTTCAGGTTTATATTTAACGTCCACCTGGCTCCATGCCGGATGGGGTTGTTTAACATACCCGCTGTCATTCCATTGCAACGGGGGACGTAACGATAACACATAAAGTAAAGTTTTCAATCCATATTTCGTACATTTTT                                                                                                   >  2:609133/2‑150                                                                     TCAGGTTTATATTTAACGTCCACCTGGCTCCATGCCGGATGGGGTTGTTTAACATACCCGCTGTCATTCCATTGCAACGGGGGACGTAACGATAACACATAAAGTAAAGTTTTCAATCCATATTTCGTACATTTTTATTTACACAGG                                                                                        <  1:361482/147‑1                                                                                   AACGTCCACCTGGCTCCATGCCGGATGGGGTTGTTTAACATACCCGCTGTCATTCCATTGCAACGGGGGACGTAACGATAACACATAAAGTAAAGTTTTCAATCCATATTTCGTACATTTTTATTTACACAGGCAATTTAGTCGCGCTTTC                                                                      <  1:377212/151‑1                                                                                                         GGATGGGGTTGTTTAACATACCCGCTGTCATTCCATTGCAAAGGGGGACGTAACGATAACACATAAAGTAAAGTTTTCAATCCATATTTCGTACATTTTTATTTACACAGGCAATTTAGTCGCGCTTTCAACCCTTACCTCTGTATAGAT                                                 >  2:26846/1‑150                                                                                                             GGGGTTGTTTAACATACCCGCTGTCATTCCATTGCAACGGGGGACGTAACGATAACACATAAAGTAAAGTTTTCAATCAATATTTCGTACATTTTTATTTACACAGGCAATTTAGTCGCGCTTTCAACCCTTACCTCTGTATAGATAAATT                                            >  1:260571/1‑151                                                                                                                 TTGTTTAACATACCCGCTGTCATTCCATTGCAACGGGGGACGTAACGATAACACATAAAGTAAAGTTTTCAATCCATATTTCGTACATTTTTATTTACACAGGCAATTTAGTCGCGCTTTCAACCCTTACCTCTGTATAGATAAATTTAC                                         >  1:727982/1‑150                                                                                                                    TTTAACATACCCGCTGTCATTCCATTGCAACGGGGGACGTAACGATAACACATAAAGTAAAGTTTTCAATCCATATTTCGTACATTTTTATTTACACAGGCAATTTAGTCGCGCTTTCAACCCTTACCTCTGTATAGATAAATTTACACT                                      <  1:294868/150‑1                                                                                                                                      ATTCCATTGCAACGGGGGACGTAACGATAACACATAAAGTAAAGTTTTCAATCCATATTTCGTACATTTTTATTTACACAGGCAATTTAGTCGCGCTTTCAACCCTTACCTCTGTATAGATAAATTTACACTCCCTATGcggccttgacgg                   <  2:232400/151‑13                                                                                                                                                       GACGTAACGATAACACATAAAGTAAAGTTTTCAATCCATATTTCGTACATTTTTATTTACACAGGCAATTTAGTCGCGCTTTCAACCCTTACCTCTGTATAGATAAATTTACACTCCCTTTGAAAACAATCCGCTATGCTTTGAAAAAGGA  <  1:427914/151‑1                                                                                                                                                       GACGTAACGATAACACATAAAGTAAAGTTTTCAATCCATATTTCGTACATTTTTATTTACACAGGCAATTTAGTCGCGCTTTCAACCCTTACCTCTGTATAGATAAATTTACACTCCCTTTGAAAACAATCCGCTATGCTTTGAAAAAGG   >  2:608784/1‑150                                                                                                                                                                                                                                                                                                               GGGCGGGTTTCGATTTCTTTTAAGGACTCTTCAAAGAGTTGAGCAAAAGATTCAGTCATGTTTAATCTTCAGGTTTATATTTAACGTCCACCTGGCTCCATGCCGGATGGGGTTGTTTAACATACCCGCTGTCATTCCATTGCAACGGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/962053‑961903 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gACGTAACGATAACACATAAAGTAAAGTTTTCAATCCATATTTCGTACATTTTTATTTACACAGGCAATTTAGTCGCGCTTTCAACCCTTACCTCTGTATAGATAAATTTACACTCCCTTTGAAAACAATCCGCTATGCTTTGAAAAAGGA  >  NC_000913/2741203‑2741352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.