Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_00091329,4860CA40.4% 94.6 / 28.0 57intergenic (+291/‑165)dapB/carAdihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase
Reads supporting (aligned to +/- strand):  ref base C (27/7);  new base A (0/23);  total (27/30)
Fisher's exact test for biased strand distribution p-value = 3.87e-10
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TTGTTGTTTTAATGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGGTTAGATGATCTTTTTGTCGCTTAATGCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAGTGAGTGAATATT  >  NC_000913/29339‑29636
                                                                                                                                                    |                                                                                                                                                      
ttgttgTTTTAATGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGGTTAGATGATCTTTTTGTCGCTTAATGCCTGTAAAACATGCATGAGCCACaa                                                                                                                                                      <  1:227747/150‑1 (MQ=255)
  gttgttTTAATGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGGTTAGATGATCTTTTTGTCGCTTAATGCCTGTAAAACATGCATGAGCCACAAaat                                                                                                                                                   <  2:355039/151‑1 (MQ=255)
  gttgttTTAATGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGGTTAGATGATCTTTTTGTCGCTTAATGCCTGTAAAACATGCATGAGCCACAAaat                                                                                                                                                   <  1:380122/151‑1 (MQ=255)
   ttgttTTAATGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGGTTAGATGATCTTTTTGTCGCTTAATGCCTGTAAAACATGCATGAGCCACAAaat                                                                                                                                                   >  2:652151/1‑150 (MQ=255)
     gttTTAATGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGGTTAGATGATCTTTTTGTCGCTTAATGCCTGTAAAACATGCATGAGCCACAAaataat                                                                                                                                                >  1:524824/1‑151 (MQ=255)
     gttTTAATGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGGTTAGATGATCTTTTTGTCGCTTAATGCCTGTAAAACATGCATGAGCCACAAaataa                                                                                                                                                 <  1:690361/150‑1 (MQ=255)
          aaTGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGGTTAGATGATCTTTTTGTCGCTTAATGCCTGTAAAACATGCATGAGCCACAAAATAATATaa                                                                                                                                            >  2:40500/1‑150 (MQ=255)
             gTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGGTTAGATGATCTTTTTGTCGCTTAATGCCTGTAAAACATGCATGAGCCACAAAATAATATaaaaa                                                                                                                                         >  1:335169/1‑150 (MQ=255)
              tAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGGTTAGATGATCTTTTTGTCGCTTAATGCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAt                                                                                                                                       >  1:739814/1‑151 (MQ=255)
               aaaTTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGATGCGCAAGCGTTTTCC‑AGAACAGGTTAGATGATCTTTTTGTCGCTTAATGCCTGTAAAACATGCATGAGCCACAAAATAATATAAAatat                                                                                                                                       >  2:466147/1‑150 (MQ=255)
                aaTTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGGTTAGATGATCTTTTTGTCGCTTAATGCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATcc                                                                                                                                     >  2:515682/1‑151 (MQ=255)
                aaTTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGGTTAGATGATCTTTTTGTCGCTTAATGCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATcc                                                                                                                                     <  1:760238/151‑1 (MQ=255)
                 aTTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGGTTAGATGATCTTTTTGTCGCTTAATGCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATccc                                                                                                                                    >  1:152046/1‑151 (MQ=255)
                        ccATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGGTTAGATGATCTTTTTGTCGCTTAATGCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCAtt                                                                                                                              >  1:140543/1‑150 (MQ=255)
                         cATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGGTTAGATGATCTTTTTGTCGCTTAATGCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTa                                                                                                                             >  1:89077/1‑150 (MQ=255)
                                 ccttttttttCTGCTTGTTTTTATTTAATCCAATTTTTTTGCGGCAAAGGCTTTTCCA‑AGAAGAGTTTAGTGGATCTTTTTGCCGTTAAATGCCGGAAAAACATGAATGACCCAAAAAATAAAAAAAAAAATCCCGCCATTAAGTTGACt                                                                                                                     <  1:657912/146‑1 (MQ=255)
                                     ttttttCTTCTCGTTTTTTTTTATTGCATTCTTTTTGCGGGAAAAGCTTTTCCA‑AAAACAGTTAAAATAATTTTTTTGTCTTTTAACCCCTAAAAAACATGCTTGAGCCAAAAAATAATATAAAAAACCCCGCCATTAAGTTGACttt                                                                                                                   <  2:436932/148‑1 (MQ=255)
                                     ttttttCTGCTCTTTTTTTTTTCATGCATTCTTCTTGCTGCGCAAGTGTTTCCA‑AAAACAGGTAAGATAATTTTTTTGTAATTTAATGCTTGTAAAACATGCATGAGCAAAAAAATAATAAAAAAATCCCCGCCATTAAGTTGACTTTTa                                                                                                                 <  2:232455/150‑1 (MQ=255)
                                       ttttCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGGTTAGATGATCTTTTTGTCGCTTAATGCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAgcg                                                                                                              >  2:161666/1‑151 (MQ=255)
                                        tttCTGCTTTTTTTTATTTCATGAATTTTTTGTGCTGCACAACCTTTTTCC‑AGAACAGGTTAGATAATTTTTTTATCGTTTATTCCGTATAAACCATGCATGAGCCAAAAAATAAAATAAAAAACCCCGCCATTAAGTTGACTTTTAgcg                                                                                                              <  2:508269/150‑1 (MQ=255)
                                              cTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGGTTAGATGATCTTTTTGTCGCTTAATGCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCatat                                                                                                       >  1:742647/1‑151 (MQ=255)
                                               tctttttttttTCATGCATTTTTCTTGCTGCGCAAGCTTTTTCC‑AGAACAGGTTAAATGATTTTTTTGTCGCTTAATGCCTGAAAAACATGCATGAGCCAAAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCata                                                                                                        <  1:661990/146‑1 (MQ=255)
                                                  ttttttttTCATGAATTCTTCTTGCTCCGAAAGCGTTTCCC‑AGAACAGTTTAGATGATTTTTTTGTCTCTTAATGCCTATAAAACATGCATGGCCCAAAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATAtctc                                                                                                    <  2:428617/150‑1 (MQ=255)
                                                   ttttttttCATGCATTCTTCTTGCTGCGCAAGCGTTTCCC‑AAAACAGTTTAGATGATTTTTTTGTCGTTTAATGCCTGAAAAACATGCATGAGCCAAAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTcc                                                                                                   <  1:1952/150‑1 (MQ=255)
                                                      tATTTCATGCATTCTTCTTGCTGCACAAGCTTTTTCA‑AAAACAGGTTAGATGATTTTTTTGCCGTTAAATGCCTGAAAAACATGCAGGAGCCAAAAAAAAATAAAAAAAACCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGa                                                                                                <  1:235732/150‑1 (MQ=255)
                                                             tGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGGTTAGATGATCTTTTTGTCGCTTAATGCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATgccgcc                                                                                        >  1:453097/1‑151 (MQ=255)
                                                             tGCAATATTCTTGTTGCGCAAGCGGTTTCC‑AGAACAGGTTAGATGATCTTTTTGTCGCTTACTGCCTGTAAAACATGCATGAGCCACAAACTAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATgccgc                                                                                         >  2:803943/1‑150 (MQ=255)
                                                              gCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGGTTAGATGATCTTTTTGTCGCTTAATGCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGccgccg                                                                                       >  1:343587/1‑151 (MQ=255)
                                                                aaTCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGGTTAGATGATCTTTTTGTCGCTTAATGCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGtt                                                                                     >  1:714427/1‑151 (MQ=255)
                                                                  ttttcttGCTGCGCAAGCGTTTTCA‑AAAACAGTTTAGATGTTTTTTTTGTCTTTAAATCCTTGAAAAACATGCATGAGCAAAAAAAAAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGttt                                                                                    <  1:533618/148‑1 (MQ=255)
                                                                              cacagtgTTTTCCAAAAACAGGTAAAATATTTTTTTTTTCGTTTAATGCCTAAAAAACTTGAATGACCCAAAAAAAAATAAAAAAAACCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATtc                                                                         <  2:507030/144‑1 (MQ=255)
                                                                                aaGCTTTTTCC‑AGAACGGGTTAGATGATCTTTTTGTCGCTTAATGCCTGAAAAACATGCATGACCCAAAAAAAAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATtcgt                                                                       <  1:800303/149‑1 (MQ=255)
                                                                                  atcttttcaaacagcAGGTTAGATCGTCTTTTTCACTCTTCTCGCCTTAAAAACATGAGGGTGCCAAAAAATAATAAAAAAACCCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGaaa                                                                            <  2:379568/129‑1 (MQ=255)
                                                                                     ttttCC‑AGAACAGGTTAGATGATCTTTTTGTCGCTTAATGCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTa                                                                  >  1:309591/1‑149 (MQ=255)
                                                                                      tttCC‑AGAACAGGTTAGATGATCTTTTTGTCGCTTAATGCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGc                                                               >  2:427696/1‑151 (MQ=255)
                                                                                         cc‑AGAACAGGTTAGATGATCTTTTTGTCGCTTAATGCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGc                                                               >  2:150340/1‑148 (MQ=255)
                                                                                            aaaaCAGTTTAGAATTTTTTTTTGTCTCTTAATCCCTGAAAAACTTGCATGCCCCACAAAATAATATAAAAAACCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGa                                                            <  2:608728/147‑1 (MQ=255)
                                                                                             gAACAGGTTAGATGATCTTTTTGTCGCTTAATGCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGAttt                                                         >  2:288670/1‑151 (MQ=255)
                                                                                                cAGTTTAGATGATTTTTTTGTCGTTTAATGCCTAAAAAACAGGCATGACCCACAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGc                                                       <  1:289643/150‑1 (MQ=255)
                                                                                                 aGGTTAGATGATCTTTTTGTCGCTTAATGCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCAt                                                     >  1:129402/1‑151 (MQ=255)
                                                                                                        atgttttttttGCCGTTTAATGCCTGAAAAACATGAATGACCCAAAAAATAATAAAAAAAACCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGa                                                  <  1:398988/141‑1 (MQ=255)
                                                                                                            tttttttGTCGTTTAATGCCTGAAAAACATGCATGAGCCAAAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACg                                            <  1:164762/147‑1 (MQ=255)
                                                                                                            tttttttGTCGCTTAATGCCTGAAAAACATGCATGACCCAAAAAAAAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGt                                           <  1:301540/148‑1 (MQ=255)
                                                                                                             ttttttGTCGCTAAATGCCTGAAAAACATGCAGGAGCCAAAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGt                                           <  1:647028/148‑1 (MQ=255)
                                                                                                                     ctataattGCCTAAAAAACATGCATAAGCAAAAAAAAAATAAAAAAAACCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCAtt                                    <  2:49121/141‑1 (MQ=255)
                                                                                                                     cGCTTCATGCCTGTAAAACATGCATGAGCCACAAAATCATATAAAAAATCCCGCCATTAAGTTGTCTTTTAACGCCCATATCTCCAGAATGCCGCCTCTTGCCAGAAATTCGTCGGAAAGCAGATTTGCATTGATATACGTCATCAtt                                    >  2:572972/1‑148 (MQ=255)
                                                                                                                         tAATGCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAAtt                             >  1:431728/1‑151 (MQ=255)
                                                                                                                          aaTGCCTGTAAATCATGCATATGCCAAAAAAAAATAAAAAAATTCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTa                            <  2:438908/151‑1 (MQ=255)
                                                                                                                                           catgAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAagtg            >  2:332677/1‑150 (MQ=255)
                                                                                                                                            atgAGCAAAAAAAAAATAAAAAAAACCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAagtgag          <  1:80448/151‑1 (MQ=255)
                                                                                                                                            aggggCCAAAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATaaa               <  1:404540/142‑1 (MQ=255)
                                                                                                                                             tgAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGAATTGATTTACGTAATCATTGTGAATTAATATGCAAATAAagtgag          >  1:526136/1‑150 (MQ=255)
                                                                                                                                             tgAACCAAAAAAAAATATAAAAATCCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCaaa                   <  2:613971/141‑1 (MQ=255)
                                                                                                                                             tgAACCAAAAAAAAAAAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAag              <  2:10800/146‑1 (MQ=255)
                                                                                                                                              gAGCCAAAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAagtgagtg        <  1:313673/151‑1 (MQ=255)
                                                                                                                                               aGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAagtgagtg        >  1:694615/1‑150 (MQ=255)
                                                                                                                                                 ccACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAGTGAGTGAat     >  1:255074/1‑151 (MQ=255)
                                                                                                                                                    caAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAGTGAGTGAATAtt  >  1:192248/1‑151 (MQ=255)
                                                                                                                                                    |                                                                                                                                                      
TTGTTGTTTTAATGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGGTTAGATGATCTTTTTGTCGCTTAATGCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAGTGAGTGAATATT  >  NC_000913/29339‑29636

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑