| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,801,966 | Δ11,843 bp | [nrdE]–[emrB] | [nrdE], nrdF, proV, proW, proX, ygaY, ygaY, ygaZ, ygaH, mprA, emrA, [emrB] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2801966 | 2813808 | 11843 | 21 [0] | [1] 22 | [nrdE]–[emrB] | [nrdE], nrdF, proV, proW, proX, ygaY, ygaY, ygaZ, ygaH, mprA, emrA, [emrB] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2801965 | 0 (0.000) | 21 (0.890) | 21/280 | 0.3 | 100% | coding (618/2145 nt) | nrdE | ribonucleoside‑diphosphate reductase 2, alpha subunit |
| ? | NC_000913 | 2813809 = | 0 (0.000) | coding (1194/1539 nt) | emrB | multidrug efflux system protein | |||||
CTGGCGTGCCTATACCTTTGAACCAGGTATGGATTTTGGCGCGTCGGCCTGGCCGCAGTTTATCCAGGGGTTTGCGGTGGCCTGCTTCTTTATGCCGCTGACCACCATTACGCTGTCTGGTTTGCCACCGGAACGACTGGCGGCGGCATCGAGCCTCTCTAACTTTACGCGAACGCTGGCGGGGTCTATCGGCACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCG‑CAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATG > NC_000913/2813662‑2813942 | cagccagccacgccaacattcctcaactgcggtaagcagcagcgcggcgaactggtttcctgttttttgctgcgtattgaagacaatatggagtcgattggtcgggcggtaaattccgcactgcagctgtcgaaacgcggcggcggcATc > 1:165857‑M2/148‑150 (MQ=255) caacattcctcaactgcggtaagcagcagcgcggcgaactggtttcctgttttttgctgcgtattgaagacaatatggagtcgattggtcgggcggtaaattccgcactgcagctgtcgaaacgcggcggcggcATCGAGCCTCTCTAACt > 1:120119‑M2/135‑151 (MQ=255) ttcctcaactgcggtaagcagcagcgcggcgaactggtttcctgttttttgctgcgtattgaagacaatatggagtcgattggtcgggcggtaaattccgcactgcagctgtcgaaacgcggcggcggcATCGAGCCTCTCTAACTTTAcg > 1:76192‑M2/130‑151 (MQ=255) actgcggtaagcagcagcgcggcgaactggtttcctgttttttgctgcgtattgaagacaatatggagtcgattggtcgggcggtaaattccgcactgcagctgtcgaaacgcggcggcggcATCGAGCCTCTCTAACTTTACGCGAACGc < 2:35668‑M2/29‑1 (MQ=255) gcggtaagcagcagcgcggcgaactggtttcctgttttttgctgcgtattgaagacaatatggagtcgattggtcgggcggtaaattccgcactgcagctgtcgaaacgcggcggcggcATCGAGCCTCTCTAACTTTACGCGAACGCt < 2:194687‑M2/30‑1 (MQ=255) gtaagcagcagcgcggcgaactggtttcctgttttttgctgcgtattgaagacaatatggagtcgattggtcgggcggtaaattccgcactgcagctgtcgaaacgcggcggcggcATCGAGCCTCTCTAACTTTACGCGAACGCTGGCgg > 2:385132‑M2/117‑151 (MQ=255) aagcagcagcgcggcgaactggtttcctgttttttgctgcgtattgaagacaatatggagtcgattggtcgggcggtaaattccgcactgcagctgtcgaaacgcggcggcggcATCGAGCCTCTCTAACTTTACGCGAACGCTGGCgggg < 2:122218‑M2/37‑1 (MQ=255) ggtttcctgttttttgctgcgtattgaagacaatatggagtcgattggtcgggcggtaaattccgcactgcagctgtcgaaacgcggcggcggcATCGAGCCTCTCTAACTTTACGCGAACGCTGGCGGGGTCTATCGGCACGTCGATaa < 2:44247‑M2/56‑1 (MQ=255) ctgttttttgctgcgtattgaagacaatatggagtcgattggtcgggcggtaaattccgcactgcagctgtcgaaacgcggcggcggcATCGAGCCTCTCTAACTTTACGCGAACGCTGGCGGGGTCTATCGGCACGTCGATAACCACGAc > 2:101928‑M2/89‑151 (MQ=255) gctgcgtattgaagacaatatggagtcgattggtcgggcggtaaattccgcactgcagctgtcgaaacgcggcggcggcATCGAGCCTCTCTAACTTTACGCGAACGCTGGCGGGGTCTATCGGCACGTCGATAACCACGACCATGTGGAc < 1:279292‑M2/72‑1 (MQ=255) tgaagacaatatggagtcgattggtcgggcggtaaattccgcactgcagctgtcgaaacgcggcggcggcATCGAGCCTCTCTAACTTTACGCGAACGCTGGCGGGGTCTATCGGCACGTCGATAACCACGACCATGTGGACCAACcgcg > 2:351008‑M2/71‑150 (MQ=255) gaagacaatatggagtcgattggtcgggcggtaaattccgcactgcagctgtcgaaacgcggcggcggcATCGAGCCTCTCTAACTTTACGCGAACGCTGGCGGGGTCTATCGGCACGTCGATAACCACGACCATGTGGACCAACcgcg > 2:227139‑M2/70‑149 (MQ=255) acaatatggagtcgattggtcgggcggtaaattccgcactgcagctgtcgaaacgcggcggcggcATCGAGCCTCTCTAACTTTACGCGAACGCTGGCGGGGTCTATCGGCACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCg < 2:22640‑M2/85‑1 (MQ=255) atatggagtcgattggtcgggcggtaaattccgcactgcagctgtcgaaacgcggcggcggcATCGAGCCTCTCTAACTTTACGCGAACGCTGGCGGGGTCTATCGGCACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGc > 2:207382‑M2/63‑151 (MQ=255) tggagtcgattggtcgggcggtaaattccgcactgcagctgtcgaaacgcggcggcggcATCGAGCCTCTCTAACTTTACGCGAACGCTGGCGGGGTCTATCGGCACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCAcc > 2:396447‑M2/60‑151 (MQ=255) cgattggtcgggcggtaaattccgcactgcagctgtcgaaacgcggcggcggcATCGAGCCTCTCTAACTTTACGCGAACGCTGGCGGGGTCTATCGGCACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATgcg < 2:377029‑M2/97‑1 (MQ=255) gattggtcgggcggtaaattccgcactgcagctgtcgaaacgcggcggcggcATCGAGCCTCTCTAACTTTACGCGAACGCTGGCGGGGTCTATCGGCACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATgcg‑c > 2:192099‑M2/53‑150 (MQ=255) ggtcgggcggtaaattccgcacggcagctgtcgaaacgcggcggcggcATCGAGCCTCTCTAACTTTACGCGAACGCTGGCGGGGTCTATCGGCACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCG‑CAGtt < 1:293402‑M2/102‑1 (MQ=255) gtaaattccgcactgcagctgtcgaaacgcggcggcggcATCGAGCCTCTCTAACTTTACGCGAACGCTGGCGGGGTCTATCGGCACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCG‑CAGTTGACTGAg < 1:101291‑M2/109‑1 (MQ=255) gctggcgaaacgcggcggcggcATCGAGCCTCTCTAACTTTACGCGAACGCTGGCGGGGTCTATCGGCACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCG‑CAGTTGACTGAGTCGGTAAACCCGTTCAAccc < 1:55430‑M2/129‑1 (MQ=255) gaaacgcggcggcggcATCGAGCCTCTCTACCTTTACGCGAACGCTGGCGGGGGCTATCGGCACATCGATAACCACTACCATGAGGGCCAACCGCTAGTCGATGCACCAATCGACAG‑TGCTTGAGGTGGTAAACCCCTTCAACACGGATg > 1:213398/8‑150 (MQ=255) gaaacgcggcggcggcATCGAGCCTCTCTAACTTTACGCGAACGCTGGCGGGGTCTATCGGCACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCG‑CAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATg < 1:52611‑M2/134‑1 (MQ=255) | CTGGCGTGCCTATACCTTTGAACCAGGTATGGATTTTGGCGCGTCGGCCTGGCCGCAGTTTATCCAGGGGTTTGCGGTGGCCTGCTTCTTTATGCCGCTGACCACCATTACGCTGTCTGGTTTGCCACCGGAACGACTGGCGGCGGCATCGAGCCTCTCTAACTTTACGCGAACGCTGGCGGGGTCTATCGGCACGTCGATAACCACGACCATGTGGACCAACCGCGAGTCGATGCACCATGCG‑CAGTTGACTGAGTCGGTAAACCCGTTCAACCCGAATG > NC_000913/2813662‑2813942 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |