Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,336,9010TA52.6% 7.6 / 25.0 19Y44F (TAT→TTT) adiCarginine:agmatine antiporter
Reads supporting (aligned to +/- strand):  ref base T (5/4);  new base A (1/9);  total (6/13)
Fisher's exact test for biased strand distribution p-value = 5.73e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.75e-03

CAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGAACGACATTTTGGCGTATACCATC‑GAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCAT‑AAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGC  >  NC_000913/4336751‑4337051
                                                                                                                                                       |                                                                                                                                                       
cagTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGAACGACATTTTGGCGTATACCATC‑GAGAGCCCCAGTGCACCGATAATCGTCACCAAccatccat                                                                                                                                                         >  2:214729/1‑151 (MQ=255)
 agTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGAACGACATTTTGGCGTATACCATC‑GAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCAT‑a                                                                                                                                                       <  1:357750/151‑1 (MQ=255)
  gTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGAACGACATTTTGGCGTATACCATC‑GAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCAT‑a                                                                                                                                                       <  1:11946/150‑1 (MQ=255)
                  tGAAAACCGAGAAACGGGCAAAAGCAGCGGCGGGCGTAAGCGTAAGAACCGCCAGGACTTGGGTCGAGGAACGACATTTTGGCGTATACCATC‑GAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCAT‑AAATGGCAATCCCGCCa                                                                                                                                       <  1:152028/150‑1 (MQ=255)
                                       aggcaggGGGGGGGGTAAGCGTAAGAACCACCACGACTTGGGTCGGGGAACGACATTTGGGCGTATACCATC‑GAGGGCCCCAGTGCACCGATAATCGTCTCCACCCATCCAA‑AAAGGGCAGTCCCGCCAGTAGAGGCCAGGTTTGCAGGTa                                                                                                                 <  1:303611/149‑1 (MQ=255)
                                              ggcgggcgTAAGCGTAAGAACCCCCGGAACTTGGGTCGAGGAACGCCATTGTGGCGTATACCATC‑GAGAACCCCAGTGCAGCGAAAATCCGCACCACCCATCAAA‑AAAGGGCAGCCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGaaa                                                                                                          <  1:25187/151‑1 (MQ=255)
                                                   gcgaaagcgtaaGACCCCCCAGGACTTGGGTCGAGGACCGACTTTTTGGCGTATCCCATC‑GAGACCCCCAGTGCCCCGAAAATCGCCCCCAACCATCCAA‑AAAGGCCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAacac                                                                                                     <  2:176731/151‑1 (MQ=255)
                                                         gcttaaaAACCCCCAGGTTTGGGGCCGGGAAACGCCATTTTGGCGTAACCCAAC‑GAGAGCCCCACGGCCCGGACAATGGTCACCAACCACCCAA‑AAATGACAACCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGa                                                                                                 <  2:137347/146‑1 (MQ=255)
                                                                 accaccAGGACTTGGGTCGAGGAACGACATTTTGGCGTATACCATC‑GAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCAT‑AAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCataat                                                                                        >  2:154634/1‑150 (MQ=255)
                                                                            tggggACGAGAACCGACATTTTGGGGTATCCCATG‑GAGAGCCCCAGTGCACCGTTAATCGCCCCCACCCATCAAA‑AAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGaca                                                                             <  2:202324/148‑1 (MQ=255)
                                                                                   gAGGACCGACATTTGGGCGTATCCCATC‑GAGACCCCCAGTGCCCCAATAATCGTCCCCACCCATCCAA‑AAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCa                                                                       <  2:82781/149‑1 (MQ=255)
                                                                                   gAGGAACGACTGTTGGGCATAT‑CCAGCGGAGGGCCCCAGTCCCCCAATAAGCGTCAGCAACCATCAAA‑AAATGCCAACCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACGCCATCAg                                                                      <  1:81844/150‑1 (MQ=255)
                                                                                          gACATTTTGGCGTATACCATC‑GAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCAT‑AAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACgg                                                              >  2:132885/1‑151 (MQ=255)
                                                                                                          ccATC‑AAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCAA‑AAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGAAACAGAAAAACACCAGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGAATTAAGCCCACttt                                              >  1:1385/1‑151 (MQ=255)
                                                                                                               cgagccccccAGTCCCCAGATAATCGTCCCCACCCATCCAA‑AAATGACAACCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACttt                                              <  1:377751/141‑1 (MQ=255)
                                                                                                                                cGATAATCGTCACCAACCATCCAT‑AAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCGGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATcc                              >  1:168516/1‑146 (MQ=255)
                                                                                                                                  aTAATCGTCACCAACCATCCAT‑AAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGAATCAGAATCCGAAGAc                        >  1:305996/1‑150 (MQ=255)
                                                                                                                                    aaccGTCACCAACCATCAAT‑AAATGGAAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACa                       <  2:67684/146‑1 (MQ=255)
                                                                                                                                    aaTCGCCACCACCCACCCAA‑AAATGACAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGa                         <  2:259562/147‑1 (MQ=255)
                                                                                                                                         tCACCAACCATCCAT‑AAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTa                 >  2:33303/1‑150 (MQ=255)
                                                                                                                                          tccccgccacccataAAAAGGCAACCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAAtg                  <  1:31712/143‑2 (MQ=255)
                                                                                                                                                ccatccaa‑AAAGGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTc            <  2:310278/148‑1 (MQ=255)
                                                                                                                                                       t‑AAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGc  >  2:172407/1‑151 (MQ=255)
                                                                                                                                                       |                                                                                                                                                       
CAGTAGAGGACGTTGGTTTGATAACCGAGAAACGGGCCAAAGCAGCGGCGGGCGTAAGCGTAAGAACCACCAGGACTTGGGTCGAGGAACGACATTTTGGCGTATACCATC‑GAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCAT‑AAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGC  >  NC_000913/4336751‑4337051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑