| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 700,614 | IS1 (–) +9 bp | coding (973‑981/1221 nt) | nagC ← | N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 257908 = | NA (NA) | 32 (0.800) | 32/298 | 0.4 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 700622 | 0 (0.000) | coding (973/1221 nt) | nagC | N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor | |||||
| * | ? | NC_000913 | = 258675 | NA (NA) | 32 (0.800) | 29/298 | 0.6 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 700614 = | 0 (0.000) | coding (981/1221 nt) | nagC | N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor | |||||
ACCACCGGCAGATTAGTGCGAAACGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCGGCACGCGGCTCTGGTAGCCCTGCTTTAACAGATTCAAC > NC_000913/700474‑700761 | gctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGATGGttt < 2:132555‑M2/11‑1 (MQ=255) ccGGCAGATTAGTGCGAAACGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTggtaat > 2:458247‑M2/1‑145 (MQ=255) cGGCAGATTAGTGCGAAACGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTggtaatg > 1:474622‑M2/1‑144 (MQ=255) gtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGATGGTTTTACCCa < 2:415454‑M2/17‑1 (MQ=255) aGTGCGAAACGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTggtaatgactccaact > 1:411562‑M2/1‑135 (MQ=255) aGTGCGAAACGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTggtaatgactccaac > 1:121979‑M2/1‑135 (MQ=255) tgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGATGGTTTTACCCAGATgacgac > 1:297719‑M2/126‑151 (MQ=255) tGCGAAACGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTggtaatgactccaactt < 1:229753‑M2/150‑18 (MQ=255) gAAACGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTggtaatgactccaacttattg > 1:31691‑M2/1‑130 (MQ=255) gccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGATGGTTTTACCCAGATGACGACCGACAt < 1:46546‑M2/32‑1 (MQ=255) ccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGATGGTTTTACCCAGATGACGACCGACATAc > 2:8497‑M2/118‑151 (MQ=255) tCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTggtaatgactccaacttattgatagtgtt > 1:194073‑M2/1‑121 (MQ=255) cgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGATGGTTTTACCCAGATGACGACCGACATACTCAAtt < 2:610332‑M2/40‑1 (MQ=255) cAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTggtaatgactccaacttattgatagtgtttt > 1:580847‑M2/1‑120 (MQ=255) aGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTggtaatgactccaacttattgatagtgtttt < 2:94651‑M2/150‑32 (MQ=255) gcgcCTGGGTATTAATGCAGCTCTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTggtaatgactccaacttattgatagtgttttat < 2:88121‑M2/151‑34 (MQ=255) cgccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTAc < 2:329214‑M2/42‑1 (MQ=255) ccTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTggtaatgactccaacttattgatagtgttttatgtt < 2:102351‑M2/151‑37 (MQ=255) caccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTc > 2:324603‑M2/107‑151 (MQ=255) caccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTc > 2:497718‑M2/107‑151 (MQ=255) cccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCg > 1:518580‑M2/104‑150 (MQ=255) ggTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTggtaatgactccaacttattgatagtgttttatgttcaga > 2:181446‑M2/1‑111 (MQ=255) aGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgat > 1:468562‑M2/1‑100 (MQ=255) gaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTAt < 1:468311‑M2/59‑1 (MQ=255) gaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCg < 1:390915‑M2/61‑1 (MQ=255) caggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCt < 1:272165‑M2/64‑1 (MQ=255) aggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATcgccgt < 2:14182‑M2/65‑3 (MQ=255) gagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGCCGCCAGACTATCGCCTTTg < 2:220976‑M2/67‑1 (MQ=255) aTAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgt < 1:57348‑M2/151‑60 (MQ=255) aTAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgt > 2:88817‑M2/1‑92 (MQ=255) tAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtc < 2:92002‑M2/151‑61 (MQ=255) acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTcgc < 1:215342‑M2/72‑1 (MQ=255) gggAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc < 1:71253‑M2/150‑65 (MQ=255) agcagcACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagct > 1:157082‑M2/1‑83 (MQ=255) tagaaacagacgccactggagcacctcaaaaacaccatcatacactaaatcagtacgttggcagcatcaccGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGc > 2:43198‑M2/72‑151 (MQ=255) aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGa < 1:300369‑M2/83‑1 (MQ=255) cTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccg < 1:230892‑M2/150‑75 (MQ=255) ttATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccga > 1:31970‑M2/1‑74 (MQ=255) aagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGttt > 2:190389‑M2/63‑151 (MQ=255) ctggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATgg > 1:425875‑M2/57‑151 (MQ=255) gTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgaca > 2:187738‑M2/1‑62 (MQ=255) tGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgac < 2:263050‑M2/149‑89 (MQ=255) tCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgact < 1:223314‑M2/151‑96 (MQ=255) ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAgtcgt > 1:614469‑M2/48‑151 (MQ=255) tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAgtcgtc > 1:500031‑M2/47‑151 (MQ=255) ccGGCAATAACAATTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttcc < 2:536170‑M2/151‑99 (MQ=255) acaccatcatacactaaatcagtaagttggcagcatcaccGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCgg > 2:361070‑M2/41‑151 (MQ=255) tcatacactaaatcagtaagttggcagcatcaccGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCGGCAcgcg > 2:177486‑M2/35‑151 (MQ=255) aaTTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgt > 1:102376‑M2/1‑42 (MQ=255) ttttttGCGGATTAAATAAGTTGATAGCAATGGCGATGGTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgc < 1:55328‑M2/151‑112 (MQ=255) tacactaaatcagtaagttggcagcatcaccGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCGGCAcgc > 2:21676‑M2/32‑147 (MQ=255) tttttGCGGATTAAATAAGTTGATAGCAATGGCGATGGTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgc > 2:206472‑M2/1‑39 (MQ=255) cactaaatcagtaagttggcagcatcaccGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCGGCACGCGGctct < 2:426011‑M2/122‑1 (MQ=255) tttGCGGATTAAATAAGTTGATAGCAATGGCGATGGTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgcca > 1:361587‑M2/1‑37 (MQ=255) aaatcagtaagttggcagcatcaccGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCGGCACGCGGCTCTGGTa < 1:191954‑M2/126‑1 (MQ=255) aatcagtaagttggcagcatcaccGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCGGCACGCGGCTCTGGTAg < 1:399678‑M2/127‑1 (MQ=255) taagttggcagcatcaccGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCGGCACGCGGCTCTGGTAGCCCTGc > 1:352737‑M2/19‑151 (MQ=255) cagcatcaccGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCGGCACGCGGCTCTGGTAGCCCTGCTTTAACAg < 1:559771‑M2/141‑1 (MQ=255) atcaccGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCGGCACGCGGCTCTGGTAGCCCTGCTTTAACAGatta < 2:3185‑M2/145‑2 (MQ=255) aGCAATGGCGATGGTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggtta > 2:272124‑M2/1‑15 (MQ=255) cAATGGCGATGGTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatg > 2:10338‑M2/1‑13 (MQ=255) ccGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCGGCACGCGGCTCTGGTAGCCCTGCTTTAACAGATTCAac > 2:300459‑M2/3‑150 (MQ=255) | ACCACCGGCAGATTAGTGCGAAACGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCGGCACGCGGCTCTGGTAGCCCTGCTTTAACAGATTCAAC > NC_000913/700474‑700761 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |