| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 357,890 | 0 | C | A | 46.2% | 58.5 / 52.3 | 78 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| Reads supporting (aligned to +/- strand): ref base C (32/10); new base A (0/36); total (32/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.90e-13 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01 | |||||||||||
GATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAA‑CCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCGCGCTAATTGAGTTCGCCTCAATGAC > NC_000913/357742‑358039 | gATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAA‑CCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGcaaca > 2:2026022/1‑150 (MQ=255) aTAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAA‑CCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACaaa < 1:1243860/151‑1 (MQ=255) aTAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAA‑CCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACaaa < 1:1848082/151‑1 (MQ=255) tAAGCGTAGCGCTTCAGGCAATTCCAGCCGCGGACCTGTGTCAGCGGCTACCGGGATTCATTTCCGCCAACAC‑CCGCGCATTCATCCAACGCCATGTGCAAAAAT‑GCATT‑CGCGTCGGCTGTCTGCCAGCTA‑TTTTCCGCCGcaacaa < 2:1237731/148‑1 (MQ=14) tAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAA‑CCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACaaa > 2:768295/1‑150 (MQ=255) aaGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAA‑CCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACaaaa < 2:1258916/150‑1 (MQ=255) aaGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAA‑CCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAAc > 1:1792281/1‑151 (MQ=255) aGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAA‑CCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAAcc > 2:352727/1‑151 (MQ=255) gTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAA‑CCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAAccgcc > 1:727587/1‑151 (MQ=255) gTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAA‑CCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAAccgac > 1:1616099/1‑149 (MQ=255) gcgcATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAA‑CCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGtt > 1:1635819/1‑151 (MQ=255) gcATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAA‑CCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTtct > 1:668219/1‑151 (MQ=255) cATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAA‑CCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTtctc > 1:1114480/1‑151 (MQ=255) cATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAA‑CCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTtctc > 1:1683744/1‑151 (MQ=255) cAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAA‑CCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTcc > 2:1068227/1‑151 (MQ=255) aTTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAA‑CCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCagtagt > 1:281082/1‑151 (MQ=255) aTTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAA‑CCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCagtag > 2:1875817/1‑150 (MQ=255) tccccgCCGCAGCCCTGTGTCGGCGGCTCCCGTGTTTCTTTCCCCCCAACAC‑CCGCGCTTTTACCCAACGCCTTGTGAAAAAAT‑CCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTCCCGCCGAAAAAAAACCGCCGTTCTCTCCagta < 1:1319676/143‑1 (MQ=255) cAGCCGCAGACCTGTGTCAGAGGCTAACGTGATTCATTTCCGAAAACAA‑CCGCGCATTTATCCAACGCCATGTGCAAAACT‑GCCTT‑CGCGGACGCTGTCTGCCAGCTATTTTTCAGCAGCAACAACACCGCCGTTCACTCCAGTAGTGGc > 2:2139920/1‑150 (MQ=255) cTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAA‑CCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑ggggg > 2:1700009/1‑143 (MQ=255) tgtgCCGGCGCCTCCCGTGATTATTTCCCCCCAACAC‑CCGCGCTTTTACCCACCGCCTTGTGAAAAAAT‑GCCTC‑CGCGGCGGTGGTCGGCCGGTTTTTTTCCCGCCAAAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCaa < 2:1704582/145‑1 (MQ=255) cggcgcCTCCCGTCTTTCATTCCCCCCAACAC‑CCCCGCATTTACCCACCCCGATGGGAAAAAGG‑GCCTC‑GGCGCCGGCTCTCTCCCGTTTATTTCCCGGCCGCACAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAg < 1:1490716/147‑1 (MQ=255) aGCGGCTACCGTGAATCATTTCCGCCAACAA‑CCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTT‑CGCGGAGGCTGTCTGCCAGCTCTTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑ggggggggaagca > 2:1358711/1‑136 (MQ=25) gcgcCTCCCGTGTTTCATTCCCCCCAACAC‑CCGCCCTTTTACCCACCGCCATGTGAAAAAAG‑GCCTC‑CGCGGCGGCTGTCTCCCAGTTTTTTTCCCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCttt < 1:36197/151‑1 (MQ=255) gCGGCTCCCGTGTTTTTTTCCCCCAAACAC‑CCGCGCTTTTACCCAACGCCATGTAAAAAAAT‑CCCTT‑CGGGGGGGCTGTCTCCCAGTTTTTTTCCCCCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCt < 2:2131483/149‑1 (MQ=255) ggCTCCCTTGATTCATTCCCGCCAACAC‑CCGCGTTTTTACCCACCCCATTGTGAAAAAAT‑GCCTC‑CGCGGCGGCTGTCGGCCAGTTTTTTTCCCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCt < 1:420232/147‑1 (MQ=255) ggCTCCCGTATTTCTTTCCCGCCAACAC‑CCGCGCTTTTATCCACCCCCATGTGAAAAAAT‑GCCTC‑CGGGGCGGCTGTCTGCCAGTTTTTTTTCCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTa < 1:640800/150‑1 (MQ=255) gCTACCGTGATTCATTTCCGCCAACAA‑CCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑gggtgccggggaata > 2:1180879/1‑131 (MQ=255) atACCGTGATTCATTTCCGCCAACAA‑CCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGTAc‑gagggaaagatct > 2:1299634/2‑137 (MQ=25) cggTGATTCATCCCCCCCAACAC‑CCGCGAATTAATCCACCGCATTTAGAAAAATT‑GCCTC‑CGCGGCGGCTGTCCCCCAGCTTTTTTCCCGCGGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGccc < 1:1910652/148‑1 (MQ=255) ccGTGTTTCATTCCCGCCAACAA‑CCGCCATTTTACCCAACCCCTTGTAAAAATTT‑GCCTC‑CGGGGCGCCTGTTTCCCAGCT‑TTTTCCCCCCGCAAAAAAGCCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGccc < 1:2177338/149‑1 (MQ=255) ccGTGTTTC‑TTTCCCCCAAAAACCCGCCCTTTTACCCACCGCCATGTCAAAAAAT‑CCCTT‑CGCGGCGGTTTTCTCCAAGTTTTTTTCCCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAg < 1:972508/147‑1 (MQ=255) gtttttCTTTCCCCCCACCAC‑CCGCGCTTTTATCCACCCCCTTGTGAAAAAAG‑GCCTT‑GGGGGCGGTTGTCTGCCAGTTTTTTTCCCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGt < 1:482270/146‑1 (MQ=255) tgttcctttccccccAACAC‑CCGCCCTTTCCCCCACCGCCTTGTGAAAAAGC‑GCCTG‑CGCGGCGGTTTTCGCCCAGTTTTTTTCCCGCCACAAAAAACCCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGt < 2:1097151/136‑1 (MQ=255) gATTCATTTCCGCCAACAA‑CCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGGGA‑GAG‑AAAAAACTTTaatacc > 1:146954/1‑142 (MQ=25) tttCCCCCAACAC‑CCGCCCTTTTCACCACCCCCATGTGAAAAAAT‑CCCTT‑CGGGGCGGTTTTCTGCCAGTTTTTTTCCCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCAtgttg < 2:560526/149‑1 (MQ=255) ttccccccAACAC‑CCCCCCTTTTACCCACCGCCATGCGAAAAAAT‑CCCTT‑GGCGGCGGCTGTCGGCCAGTTATTTTGCCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGt < 2:1653482/136‑1 (MQ=255) ttCCGCCAACAA‑CCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAAAAACTTTTAACCCCCCCTGTtttgt > 1:267943/1‑151 (MQ=25) cccccaccaC‑CCGCGCATTTATCCACCGCCTTGTGAAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTTTTTTCCCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTtgtgt < 1:464253/146‑1 (MQ=255) aacac‑cCGCCCTTTTACCCACCGCCTTGTGAAAAAAG‑CCCTT‑CGCGGCGGTTGTCTGCCAGCTTTTTTCCCCCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCa < 1:1032545/148‑1 (MQ=255) aa‑cCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAAAAACTTTAAACCCGTCATGTTTTGTGGCaa > 1:382756/1‑146 (MQ=255) cgcgCATTTATCCAACGCCATGTGCAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGGCAA‑GGG‑AAAAGACTTTAAACCC‑TCATGGTGTGTggggttag > 2:333337/1‑140 (MQ=25) gccaaTTTACCCAACCCCTTGT‑CAAAAATCCCCTT‑CGGGGCGGTTTTCCGCCGTCTTTTTTCCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCgctgct < 1:1508304/146‑1 (MQ=255) tttATCCAACGCCATGTGCAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGGCA‑AAG‑AAAAAAATTTTAAACCCCCCTGTTTTGTGGGGAACGCTGCTgg > 1:787669/1‑147 (MQ=21) tttATCCAACGCCATGTGCAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCGA‑GAG‑AAAAAAATTTTAAACCCCCATGTTTTGTGGGGAAAGCTGCTgg > 1:465384/1‑147 (MQ=25) tttATCCAACCCCATGTAAAAAAAT‑CCCTT‑CGCGGCGGCTGTCTCCCAGTTATTTTCCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTgg < 1:342028/147‑1 (MQ=255) tttACCCACCGCCATGTCAAAAAAT‑CCCTC‑CGGGGCGGTTGTCTGCCAGTTATTTTCCCGCCCCAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGctgctg < 1:904170/146‑1 (MQ=255) tttACCCACCCCCATGTGAAAAAAT‑GCTTC‑CGCGGCGGCTTTCTCCCATTTTTTTTCCCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTa < 1:1969844/149‑1 (MQ=255) tttACCCAACGCCATGTGAAAAATT‑CCCTC‑GGGGGCGGTTGTCTCCCAGCTTTTTTCCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCgctgct < 1:962394/145‑1 (MQ=255) ccAACCCCATGTGCAAAAAT‑CCCTC‑CGCGGCGGTTGTCTGCCAGCTTTTTTCCCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAAtgt < 1:1429417/151‑1 (MQ=255) caccccaagggcaaaaaaT‑CCCTC‑CGGGGGGGCTTTCTCCCAGGTTTTTTCCCCCACCAAAAAACCCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACa < 2:721553/133‑1 (MQ=255) cAACCCCATGTGAAAAAAG‑TCCTT‑CCGGGCGTGTTGCCCCCATGTTTTTTCCCCCCACAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACa < 2:2177442/146‑1 (MQ=255) aCGCCATGTGCAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGGGA‑GAG‑AAAAAAATTTAAACCCCGCCTGTTTTGTGGGGAACGCTGCTGGGAaaaaaaggg > 1:887493/1‑145 (MQ=25) cccctggtaaaaaaaT‑GCCTC‑CGGGGGGGTTGCCTGCAAGTTATTTTCCCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAAt < 2:468096/135‑1 (MQ=255) cGCCATGTGCAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGGAA‑AAG‑AAAAAAAATTATAACCCCCCTCTTGTGTGGGGAACGCTGCTGGTGACaaaatgg > 1:1242600/1‑144 (MQ=21) ccttgtaaaaaatT‑GCCTG‑CGGGCGGGCTGCCGGCAAGTTTTTTTCCCCCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAAtgtg < 2:626541/138‑1 (MQ=255) cATGTGCAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGGGA‑GAG‑AAAAAAATTTTATCCCCTCCTGTTGTGTGGGGAACGCTGCTGGTGACAAtgtg > 1:1613105/1‑145 (MQ=37) gaaaaaaa‑GCCTTCCGGGGCGGCTGTCTCCCGTTTTTTTTCCCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCGTGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAg < 2:2076678/149‑1 (MQ=255) aaaaT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGGGA‑GAGAAAAAACCTTTAAGCCC‑CCCTGTTGTTTTGGGATCCCTGCTGGTGAAAAATTGGGAAGGGGAggggg > 1:810743/1‑147 (MQ=255) tcccTT‑CGCGGGGGTTGTCTCCCAGTTTTTTTCCCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTgcggcg < 1:1498079/148‑1 (MQ=255) ccTC‑CGCGGCGCCTTTCGCCAAGTTTTTTTCCCCCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAAt < 2:434068/151‑1 (MQ=255) cTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGGGA‑GAGAAAAAAGTTTTAACCCCCCCA‑GTGTTGTGGGGATAGCTGCTTGGGAAAAAGTGGGGAGGGAAGAgcgg > 1:2049355/1‑145 (MQ=255) cgcgGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGGGA‑GAG‑AAAAAAATTTTAAACCCCCCTTTTTTGTGGGGATACCTGCTGGGTACAAAGTGGGAAggggaaggggggggatc > 1:307131/1‑134 (MQ=255) ggcggcTGTCCCCCGGTTTTTTTCCCCCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAAt < 2:1993011/144‑1 (MQ=255) gcggcTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACTGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCa < 2:89198/151‑1 (MQ=255) tttcgccgagtttttttcCCGCCAAAACAAACCCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCa < 2:1370889/133‑1 (MQ=255) ctcccAGTTTTTTTCCCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGT‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGaa < 2:506444/143‑1 (MQ=255) ccAGTTTTTTTCCCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACcgc < 1:1550277/147‑1 (MQ=255) ccAGTTTTTTTCCCCCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCGCGCt < 1:932212/150‑1 (MQ=255) ccAGTTATTTTCCCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCa < 1:1800706/140‑1 (MQ=255) ccAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGGCA‑GGG‑AAAAAAACTTAAACCCCCCCCGTTCTGTGGCGATCGCTCCGGGGGACCAAGTGGGAAGGGGAGGGCGGCGGAACAGCTccccaaacccgc > 2:814227/1‑139 (MQ=255) tttttCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGGGA‑GAG‑AAAAAACTTTTAACCCCCCCTTTTTTGTGGGGATCGCTGCTGGGAAAAAAGTGGAAAAGGAAGGGGGGGGGAACAGCCCCCCAACCGCGCCAATTTAg > 1:135170/1‑150 (MQ=255) ttttcCCGCCAAAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAAcc < 2:1308814/138‑1 (MQ=255) ttttcCCCCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCGCGCTAATTGa < 1:395976/149‑1 (MQ=255) tttcCCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCGCGCTAATTGAGt < 1:1516533/150‑1 (MQ=255) cccgccaAAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCGCGCTAATTGAGTTc < 2:748908/148‑1 (MQ=255) ccgccgAAAAAAAGCCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCGCGCTAATTGAGTTCGc < 2:281047/150‑1 (MQ=255) cccccacaaaaaACCCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCGCGCTAATTGAGTTc < 1:1950260/142‑1 (MQ=255) ccacggcAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACcgc < 2:1432384/130‑1 (MQ=255) cgcAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGGAA‑GAGAAAAAAATTTTAAACCCG‑CCTGTTGTGTGGGAATTGCTGCTGGTAAAAAATTGGGAAGGGGGGGGGGGGGGATTCACTCCCGAACCCCGCTAATTTAGTTTGCCt > 1:1069530/1‑148 (MQ=255) cgcAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCGCGCTAATTGAGTTCGCCt < 1:1426215/148‑1 (MQ=255) caacaaAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGGAAGGAA‑AAAAAAATTTAACCCCTCCTTGTT‑TTTGGCGCACGCCGCTGGTGAAAATGTGGGAAGGGGAGGGGGGGGGAACAGCCCCCGGAACCCGCCAAATGAGGTCGCCTccc > 2:1498248/1‑147 (MQ=255) acaaAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCGCGCTAATTGAGTTCGCCTCAATGac < 1:1056026/151‑1 (MQ=255) | GATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCCAACAA‑CCGCGCATTTATCCAACGCCATGTGCAAAAAT‑GCCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGC‑GGGGCAA‑GAG‑AAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCGCGCTAATTGAGTTCGCCTCAATGAC > NC_000913/357742‑358039 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |