Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,536,1970AT41.3% 170.9 / 101.1 128intergenic (+166/+417)yjhR/nanSpseudogene, helicase family; putative frameshift suppressor/9‑O‑acetyl N‑acetylneuraminic acid esterase
Reads supporting (aligned to +/- strand):  ref base A (5/69);  new base T (52/0);  total (59/69)
Fisher's exact test for biased strand distribution p-value = 4.71e-30
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 129 total aligned reads displayed.

ATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCC  >  NC_000913/4536051‑4536346
                                                                                                                                                   |                                                                                                                                                       
aTACAGGAGTAGTAAAGGGCATATTTTACCAATGTTCAGGCGACTTTCCTTTTTATTGCGTGTCGCCTTTCCTGATTATAAATCTTATTGTTTTCCTTATCATTTTCCTTTTCATAATGCGCCCTGGCTTAATGGCGGGTGCTTTTAgg                                                                                                                                                       <  2:1359016/149‑1 (MQ=255)
  aCAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATg                                                                                                                                                  <  2:2125735/151‑1 (MQ=255)
  aCAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATg                                                                                                                                                  <  1:92282/151‑1 (MQ=255)
  aCAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATg                                                                                                                                                  <  2:1227678/151‑1 (MQ=255)
   cAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATga                                                                                                                                                 <  2:1693486/151‑1 (MQ=255)
    aGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATgaa                                                                                                                                                <  2:420135/151‑1 (MQ=255)
       agtagtAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATgaaaga                                                                                                                                             <  2:655179/151‑1 (MQ=255)
        gtagtaAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATgaaagaa                                                                                                                                            <  2:281286/151‑1 (MQ=255)
        gtagtaAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATgaaagaa                                                                                                                                            <  2:462815/151‑1 (MQ=255)
          agtaAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATgaaagaaa                                                                                                                                           <  2:1663636/150‑1 (MQ=255)
          agtaAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGaaaa                                                                                                                                          <  1:712800/151‑1 (MQ=255)
           gtaAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTTTTTTTTTGTATGAAAGaaaa                                                                                                                                          >  2:548217/1‑150 (MQ=255)
              aaGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATgca                                                                                                                                      <  1:1641493/151‑1 (MQ=255)
               aGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATgcaa                                                                                                                                     <  2:1144158/151‑1 (MQ=255)
               aGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGGTTTTTTGAATGaaaaaaaaataa                                                                                                                                      >  2:479603/1‑146 (MQ=255)
               aGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGGTTTTTTGAATGaaaaaaaaaaca                                                                                                                                      >  1:499749/1‑146 (MQ=255)
               aGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTACGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGGATGAAAGaaaaagaa                                                                                                                                      >  2:582535/1‑146 (MQ=255)
                 ggCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGGTTTTTTGGATGaaaaaaaa                                                                                                                                          >  1:2133006/1‑144 (MQ=255)
                  gCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGGCTTTATGAAGTGaaaaaaaaacaa                                                                                                                                      >  1:1711158/1‑144 (MQ=255)
                   cATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTTGAATGaaaaaaaaaaaaagca                                                                                                                                  >  1:567679/1‑142 (MQ=255)
                      atTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGAATTAAAGAAAATgcaagcaaaa                                                                                                                               >  1:1383352/1‑148 (MQ=255)
                      atTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCaataa                                                                                                                              <  2:278104/151‑1 (MQ=255)
                         ttACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGGTTTTTTGGATGAAAGAAAAAAAAAGAaataa                                                                                                                              >  2:352149/1‑148 (MQ=255)
                          tACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAataatat                                                                                                                           <  1:55004/150‑1 (MQ=255)
                          tACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGGTTTTTGGGATGAAAAAAAAAGCAAGCaaaaaaa                                                                                                                            >  1:886158/1‑147 (MQ=255)
                           aCCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAataatataa                                                                                                                         <  1:1268392/151‑1 (MQ=255)
                            ccAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGAATGAAAAAAAATACAAGCAaaaata                                                                                                                            >  2:1595133/1‑147 (MQ=255)
                            ccAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAataatataat                                                                                                                        <  2:372330/151‑1 (MQ=255)
                             cAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTTGAATGAAAGAAAAAACAAGCaataaaaaaa                                                                                                                         >  1:1271717/1‑144 (MQ=255)
                              aaTGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATAtaataa                                                                                                                     <  2:1988346/151‑1 (MQ=255)
                                 gTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATg                                                                                                                   <  2:719031/150‑1 (MQ=255)
                                 gTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGCTTTTTTGAATGAAAGAAAAAGCAAAAAAAAATAtaataa                                                                                                                     >  1:453782/1‑148 (MQ=255)
                                    aaGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTTGGAAGAAAGAAAAAGAAAGCAAaaaaataaaaataggc                                                                                                                >  2:1785272/1‑146 (MQ=255)
                                    aaGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGcc                                                                                                                <  1:470221/150‑1 (MQ=255)
                                       gCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAAt                                                                                                            <  1:279236/151‑1 (MQ=255)
                                        cGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAAtt                                                                                                           <  1:1168401/151‑1 (MQ=255)
                                        cGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAAtt                                                                                                           <  1:270196/151‑1 (MQ=255)
                                        cGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAAtt                                                                                                           <  1:1745041/151‑1 (MQ=255)
                                         gACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAAttt                                                                                                          <  1:278998/151‑1 (MQ=255)
                                            tttCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGCTTTTTTGGATGAAAAAAAAAGCAAACAATAAAATAAAAAAAGGCTAAtttttt                                                                                                       >  1:29654/1‑151 (MQ=255)
                                             ttCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCtt                                                                                                       <  2:2000822/150‑1 (MQ=255)
                                             ttCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCt                                                                                                        <  1:948589/149‑1 (MQ=255)
                                              tCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGCTTTTTTGTATTAAAAAAAAAGCAAGCAATAATATAATAATTGGCTTATtttttt                                                                                                      >  2:990005/1‑150 (MQ=255)
                                               ccGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGa                                                                                                    <  2:2191678/151‑1 (MQ=255)
                                                 gTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAAc                                                                                                  <  2:939693/151‑1 (MQ=255)
                                                      aTTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAAcatcat                                                                                             <  1:1807944/151‑1 (MQ=255)
                                                        tGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCAtt                                                                                            <  1:827825/150‑1 (MQ=255)
                                                          cGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAg                                                                                         <  1:948070/151‑1 (MQ=255)
                                                               cGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGCGCCTTTTGGCATGAAAAAAAAAGCAAAGAAAAAAATAATAATAGGCTCAATTTTTTTAAAATCATTAAAAatat                                                                                    >  1:1059226/1‑151 (MQ=255)
                                                                    ttCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTTGGATGAAAGAAAAAGCAAGCAATAAAATAATAATGGCCTCATTTTTTTTTACATCATTAAACATatcat                                                                                 >  1:906270/1‑149 (MQ=255)
                                                                    ttCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATatcatc                                                                                <  2:1131832/150‑1 (MQ=255)
                                                                       cTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGCTTTTTTGTATGAAAAAAAAAGAGAACAATAATATAATAAAAGGCCTATTTTTTTTTATATAATTAAACATatca                                                                                  >  2:603738/1‑145 (MQ=255)
                                                                           ttATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGTATGAAAAAAAAAAAAAGCAAAAATATAATAATTGCCTCATTTTTTTTTAAAAAATTAAGCATATAATCATCGt                                                                           >  2:796078/1‑148 (MQ=255)
                                                                           ttATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGCGGGTTTTTTTGATGAAAAAAAAAGAAACCAAAAAAATAAAAATTGCCTTATTTTTTTTAAAAACCTTAAGAAAATCATCATTGTCt                                                                         >  2:56321/1‑150 (MQ=255)
                                                                             ataAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGCTTTTTTGGATAAAAAAAAAAAAAAACAAAAATATAATAAAGGCCTAATTTTTTTTAAAAACATTAAACATAATAACATCGTCtttt                                                                      >  1:1715395/1‑151 (MQ=255)
                                                                              taAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTGTTTTTAAAAAAAAAGTAAGCAAAAATATAAAAAATGGCTAATTTTTTTTTTAATAATTAAAAATATCATCATAGTTTAttt                                                                     >  2:1612945/1‑151 (MQ=255)
                                                                              taAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGCTTTTTGGAATGAAAAAAAAAGAAAGCAATAATATAAAAAATGCCTAATTTTTTTTAACAACATTAAACATATCATAATCGTCTAttt                                                                     >  1:1726663/1‑151 (MQ=255)
                                                                              taAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGACGGTTTTTTGTTTGAAAGAAAAAGTAAGGAATAATATAATAATAGGATTATTTATTTTTATATCATTAAGCATATATACATAATCTAttt                                                                     >  2:626599/1‑151 (MQ=255)
                                                                                 aTCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGTATGAAAGAAAAAGCAAGACATAATAAAATAAATGCCTAATTTCTTTTAACAACATTAAACATATAATCTTCATCTAttttc                                                                   >  2:1931799/1‑148 (MQ=255)
                                                                                  tCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCCTTTTGGGATGAAAAAAAAAACAAACAAAAAAATAAAAATAGCCTAATTTTTTTGTAAATCATTTAACATATTATCATCGTCTAtttt                                                                    >  1:581064/1‑147 (MQ=255)
                                                                                     tATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCa                                                                 <  2:487263/148‑1 (MQ=255)
                                                                                     tATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAg                                                                <  1:739449/149‑1 (MQ=255)
                                                                                       ttGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTGGAATGAAAGAAAAAGCAAACAATAATATAATAAATGCCTAATTTTTTTTTACATCATTAAGCATATCATCATCGTCTATTTTCCAGaa                                                              >  1:1025423/1‑149 (MQ=255)
                                                                                          tttACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGGTTTAAAAAAAAAGGAAGGAATAAAATAAAAATGGGCTTATTTTTTTGTAAAAAATTTAACATATAATCATTGTCTATTTTcc                                                                  >  2:779865/1‑142 (MQ=255)
                                                                                           ttACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGt                                                         <  1:160881/150‑1 (MQ=255)
                                                                                           ttACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGt                                                         <  1:233280/150‑1 (MQ=255)
                                                                                           ttACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGt                                                         <  1:1910187/150‑1 (MQ=255)
                                                                                            tACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTc                                                        <  2:1518604/150‑1 (MQ=255)
                                                                                              ccTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGAc                                                     <  2:719960/151‑1 (MQ=255)
                                                                                                tAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGTTTTTTTGGTAGAAAAAAAAAGCAAGCAAAAATATAAAAAATTGCTAATTTTTTTTATAATAATTTAAAATATACTCATTCTCATTTTTCCAGAATAAGTCGAAtt                                                   >  2:1332086/1‑151 (MQ=255)
                                                                                                tAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGCTTTTTGGGATGAAAGAAAAAGCAAGCAAAAATATAATAATGGCCTAATTTTTTTTAAAATCATTAAACATATCATCATCGTCTATTTTCCAGAATCCGTCGACtt                                                   >  1:2169426/1‑151 (MQ=255)
                                                                                                 aaTCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGTTTTTTGGTATTAAAGAAAAAGCAAGAAAAAAAATAAAAAAAGACTAATTTTTTTTAAAATAAATTAACATATAATAATCGTCTATTTTTCAGAATTCCTCCACtt                                                   >  2:1512875/1‑150 (MQ=255)
                                                                                                 aaTCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACtt                                                   <  1:1752194/150‑1 (MQ=255)
                                                                                                    cATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATaa                                               <  1:514465/151‑1 (MQ=255)
                                                                                                       tttCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATc                                             <  1:1004242/150‑1 (MQ=255)
                                                                                                        ttCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCg                                            <  1:1101539/150‑1 (MQ=255)
                                                                                                        ttCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGGGTTTTTTGTGGAAAAAAAAACCAAGAAAAAAAATAAAAATGGGCTAAATTTTTTTAACAAAATTAAAAAAATTAACATCGTCTATTTTTCAGAATACGTccccctatatta                                             >  2:1551358/1‑138 (MQ=255)
                                                                                                         tCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGGTTTTTGGGAAGAAAAAAAAAGCAAACAAAAAAATAAAAAAAGGCCAATTTTTTTTTAAAACATTAAACATATCATCATCGTCTATTTTTCCCAAACCGTCCACTTATAAttccc                                          >  1:1563089/1‑147 (MQ=255)
                                                                                                          ccTTTGCATAATGCGCCTGGGATTAATGGCGGGGGCTTTTTTGAATGAAAAAAAAAACAAACAAAAATATAAAAAAAGGCTAAATTTTTTTAACATAATTAAACATATCATCATCGTCTATTTTTCAGAAACCGTCGACTTTTAATCTcc                                          >  1:1379898/1‑150 (MQ=255)
                                                                                                             ttGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGa                                       <  1:2090393/150‑1 (MQ=255)
                                                                                                              tGCATAATGCGCCTGGGATTAATGGCGGGGGCTTTTTGGGATGAAAGAAAAAGCAAACAATAATATAAAAAATGCCCAATTTTTTTTTACATCATTAAGCATATCATCATCGTCTATTTTCCCGAAACCCTCGACTTATAATCGCCCGaa                                      >  1:2174959/1‑150 (MQ=255)
                                                                                                                cATAATGCGCCTGGGATTAATGGCGGGTGGTTTTTGGTATGAAAAAAAAAGCAAGCAAAAATATAATAAAGGGCTAATTTTTTTTTAAATCATTCAACATAACATCATAGTCTATTTTTCAGAAACCGTCCACTTTTAATTTCCAGAAAgg                                   >  2:532245/1‑151 (MQ=255)
                                                                                                                  tAATGCGCCTGGGATTAATGGCGGGGGCTTTTTTGGAAGGAAAAAAAAGCAAACAAAAATATAATAATAGCCTAATTTTTTTTAAAAACATTAAACATATTATCATCGTCTATTTTTCAGAAACCGCCGACTTTTAAtttccacaaagg                                   >  1:229684/1‑138 (MQ=255)
                                                                                                                    aTGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCata                               <  2:1841322/151‑1 (MQ=255)
                                                                                                                     tGCGCCTGGGATTAATGGCGGGGGGTTTTTTGGATGAAAGAAAAAGGAAGCAAAAATATAAAAAAGGCCTAATTTTTTTTTACATTATTAAACAAATCATCATCGTCTTTTTTCCCGAAACCGTCGAACTATAATTCCCAGaa                                      >  1:198234/1‑143 (MQ=255)
                                                                                                                         ccTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAgg                          <  1:1021972/151‑1 (MQ=255)
                                                                                                                          cTGGGATTAATGGCGGGTGCTTTTTTGGATGAAAGAAAAAGCAAGAAAAAATATAATAATTGCCTAATTTTTTTTAACATCATTAAGCATAACATCATCGTCTATTTTCCAGAATCCGTCGACTTATAATCTCCAGAAAAGCatat                              >  2:1396413/1‑146 (MQ=255)
                                                                                                                            gggATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGAc                        <  2:1397596/150‑1 (MQ=255)
                                                                                                                               aTTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGtg                    <  1:1370307/151‑1 (MQ=255)
                                                                                                                                 tAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGtgc                   <  1:1336430/150‑1 (MQ=255)
                                                                                                                                  aaTGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGtgctg                 <  1:101782/151‑1 (MQ=255)
                                                                                                                                   aTGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGtgctgc                <  2:529360/151‑1 (MQ=255)
                                                                                                                                    tGGCGGCTGCTTTTCAGAATGAAAGAAAATCCAAGCAATTATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTCTAAACGCCAGAACGGCATATCAGGACGGtgatgc                >  2:682163/1‑150 (MQ=255)
                                                                                                                                      gCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCg               >  2:607671/1‑149 (MQ=255)
                                                                                                                                      gCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGa              >  2:663988/1‑150 (MQ=255)
                                                                                                                                       cGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAAc            <  1:1498587/151‑1 (MQ=255)
                                                                                                                                          gTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCt         <  1:1030893/151‑1 (MQ=255)
                                                                                                                                            gCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCtgt       >  1:1840178/1‑151 (MQ=255)
                                                                                                                                                tttAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTgg     <  1:2165270/150‑1 (MQ=255)
                                                                                                                                                tttAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGc    >  1:746557/1‑151 (MQ=255)
                                                                                                                                                   |                                                                                                                                                       
ATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCC  >  NC_000913/4536051‑4536346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: