Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,206,4350CT50.9% 34.1 / 89.4 55intergenic (‑179/‑28)ttdR/ttdAtranscriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit
Reads supporting (aligned to +/- strand):  ref base C (6/21);  new base T (28/0);  total (34/21)
Fisher's exact test for biased strand distribution p-value = 3.52e-10
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.51e-08

CAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAG  >  NC_000913/3206285‑3206585
                                                                                                                                                      |                                                                                                                                                       
cAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTc                                                                                                                                                         <  1:855665/151‑1 (MQ=255)
           gCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTTcaaacaaaa                                                                                                                                                >  1:545469/1‑148 (MQ=255)
                 cATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAaaaaaaaaaa                                                                                                                                         >  1:275257/1‑150 (MQ=255)
                  aTTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGTATTTTTCCAGACAAATACAAAAACt                                                                                                                                       <  1:47066/151‑1 (MQ=255)
                    tGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCCGAcaaaaacaaaaaa                                                                                                                                        >  2:64475/1‑147 (MQ=255)
                    tGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATACAAAAAcatg                                                                                                                                     >  1:80877/1‑148 (MQ=255)
                       cATTCCCTGCTCTGGCACAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGt                                                                                                                                  <  1:734722/151‑1 (MQ=255)
                        aTTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGtt                                                                                                                                 <  2:908447/151‑1 (MQ=255)
                        aTTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGtt                                                                                                                                 <  2:418536/151‑1 (MQ=255)
                             cTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTCAGACAAAAAAAAAAAATTGAGTTGCCa                                                                                                                             >  2:253519/1‑150 (MQ=255)
                              tGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTTCAAAAAAAAACAAAAAATGGGGTTGCCat                                                                                                                            >  1:764888/1‑150 (MQ=255)
                                ctctGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATGTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCatg                                                                                                                           <  1:747129/149‑1 (MQ=255)
                                    ggCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAACACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCatgatg                                                                                                                        <  2:222197/148‑1 (MQ=255)
                                         aaTATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATACAAAAAATGGAGGTGCCATGATGAGCGaaa                                                                                                                >  2:7041/1‑150 (MQ=255)
                                         aaTATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTTAAACAAAAAAAAAAAATGGAGGTGGCatggagggg                                                                                                                     >  1:494679/1‑140 (MQ=255)
                                            attcattcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAAACAAATACAAAAAATGGAGTTGCCATGATGAGCGAAAGta                                                                                                             >  1:801255/1‑150 (MQ=255)
                                             ttcattcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTTCCGACAAAAAAAAAAAAAGGAGTTGCCATGATGAGGGGAAGaaa                                                                                                            >  2:645428/1‑150 (MQ=255)
                                               cattcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAAAAAAAAAAATGGAGGTGCCATGATGAGCGAAAGtaa                                                                                                            >  2:660340/1‑148 (MQ=255)
                                                attcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAAAAAAAAAAAAAAAATGGAGATGGCATGATGAAGGAAAAtaataa                                                                                                         >  1:5971/1‑150 (MQ=255)
                                                attcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTTCCACAAATACAAAAAATTGAGATGGCAAGAAGAGCGGAAGgaataa                                                                                                         >  2:851324/1‑150 (MQ=255)
                                                   cTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCCGAAAAAAACAAAAAATGGAGGTGCCATGATGAGCGAAAGGAAAAAACa                                                                                                      >  2:604245/1‑150 (MQ=255)
                                                    ttATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAAAACAAAAAATGGAGTTGCCATGATGAGCGAAAGAAAAAAGCaa                                                                                                     >  2:927036/1‑150 (MQ=255)
                                                      aTTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACa                                                                                                   <  2:501166/150‑1 (MQ=255)
                                                       ttttCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATACAAAAACTGGAGGTGCCATGATGAGCGAAAGAAATAAACaaaa                                                                                                   >  2:137606/1‑147 (MQ=255)
                                                        tttCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGAATTTTTCACACAAAAAAAAAAAATTGGGGTGTCATGGTGAGGGAAAGtgataaaaaa                                                                                                     >  1:198248/1‑142 (MQ=255)
                                                           cgcgTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTTAAAAAAAAAAAAAAAATGGAGGTTTCATGGTGAGGGAAAGtaaaaaaaaaaa                                                                                                   >  1:936402/1‑139 (MQ=255)
                                                              gTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGGCAAAAAAAAAAAATGGAGTTGCCATGATGAGGGAAAGAAATAAACAAAAAGCAggg                                                                                            >  2:122997/1‑147 (MQ=255)
                                                                tGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAAt                                                                                         <  1:442477/150‑1 (MQ=255)
                                                                  aTTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCCGAAAAAAAAAAAAAAAGGAGGTGCCATGATGAGCGGAAGAAAAAAAAAAAAGGCAGGGAaaaa                                                                                       >  2:587256/1‑150 (MQ=255)
                                                                    tCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGt                                                                                     <  2:936764/150‑1 (MQ=255)
                                                                        gAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGCGAATTTTTTCAGACAAAAACAAAAAATGGAGTTGCCCTGATGAGGGCAAATAAAAAGCAAAAGGCAGGGAATa                                                                                        >  2:46916/1‑143 (MQ=255)
                                                                                aaTTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTg                                                                         <  2:23873/150‑1 (MQ=255)
                                                                                 aTTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTc                                                                       <  1:497244/151‑1 (MQ=255)
                                                                                  ttACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTTACAACAAAAAAAAAACTGGAGTTGGCATGGTGAGGGAAAGGAATAAAAAACAGGCAGTGAaaaa                                                                                       >  1:291378/1‑134 (MQ=255)
                                                                                     cATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTa                                                                   <  2:887267/151‑1 (MQ=255)
                                                                                            aCGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTAc                                                            <  1:713427/151‑1 (MQ=255)
                                                                                              ggTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCg                                                          <  1:703734/151‑1 (MQ=255)
                                                                                                  gCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTCAAACAAAAACAAAAAATGGAGTTTGCATGGTGAAGGGAAAGAATAACCAAAAAGCAATGAATAAATTTACAAAGATTGTCGCTAACCTTTCcccc                                                        >  1:875174/1‑149 (MQ=255)
                                                                                                    aaaaaaTATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATg                                                     <  2:545721/150‑1 (MQ=255)
                                                                                                    aaaaaaTATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTGGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGGGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATg                                                     <  1:627064/150‑1 (MQ=255)
                                                                                                        aaTATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATAAAAAAAATGGAGGTGCCCTGATGAGCGAAAAGAATAAACAAAAAGCAGTGAATAAGATGACAGAGATTTTTGCTAAATTTTCCCCCATGAttt                                                 >  2:74442/1‑150 (MQ=255)
                                                                                                                 ccACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCAAGACAAATAAAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTAACAGAGATTGTCGCTAATTTTCCCGCCATGATTTCTACCCGAAt                                       <  1:490010/151‑1 (MQ=255)
                                                                                                                  cacaTTTTAGGTGGTAGTTTGTGGCGATGATTTTTTCCAGACAAATACAAAAACAGGGGTTGCCAGGATGAGCGAAAGTAATAAGCAACAGGCAGTAAATATGTTGCAGGAGTTTGTCGCTATTTTTACCGCCATGATTTCTACCCGAATg                                      <  2:485142/151‑1 (MQ=255)
                                                                                                                       ttttAGTGGTAGTTTGTGGCGGTGAATTTTTTCCAACAAAAACAAAAACTGGAGGTGGCATGGTGGGGGGAAGGAATAAAAAACAAGCAGTGAATAAGGTGACAGAGATTGTAGGTAACTTTACCGCCCTGGTTTTTTACCGAATGcc                                    >  1:102274/1‑148 (MQ=255)
                                                                                                                       ttttAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAAAACAAAAAATGGAGGTGGCCTGATGAGCGGAAGTAATAAGCAAAAAGCAGTGAATAAGTTGACAGAGATTGTCGCTAAATTTACCGCCATGATTTTTACCCCAATGcc                                    >  2:854286/1‑148 (MQ=255)
                                                                                                                          tAGTGGTAGTTTGTGGGGGTAAATTTTTCCAGACAAATACAAAAACTGGAGTGGCCATGATGAGCAAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCtgatg                               <  2:981596/150‑1 (MQ=255)
                                                                                                                          tAGTGGTAGTTTGTGGCGGTGAGTTTTTTCCGCCAAACACAAAAAATGGAGGTTCCATGATGAGGGAAAGTAAAAAACAAAAGGGAGTGAAAAAGATGACAGAGGTTGTCGCTAACTTTACCCCCATGATTTTTTCCCGaaaacct                                   >  1:704133/1‑141 (MQ=255)
                                                                                                                           aGTGGTAGTTTGTGGCGGTGAATTTTTTCCGACAAACACAAAAACTGGGGGTGGCATGGTGGGGGGAAGGAAAAAACAAAACGCAGGGAAAAAAATGACAGAGAGTTTTGGTAAATTTAACCCCCCGATTTCTACCCCAAAGcc                                    >  1:162820/1‑144 (MQ=255)
                                                                                                                                       tgGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATaa                  >  2:231688/1‑150 (MQ=255)
                                                                                                                                        ggCGGTAAATTTTTCCAGAAAAATACAAAAACTGGGGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGTTTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAAc                <  2:471330/151‑1 (MQ=255)
                                                                                                                                           ggTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTa              >  2:559218/1‑150 (MQ=255)
                                                                                                                                              gAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaaaa           >  2:544608/1‑150 (MQ=255)
                                                                                                                                               aaTTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAAc          <  2:480369/150‑1 (MQ=255)
                                                                                                                                                 tttttCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGc       >  1:595077/1‑151 (MQ=255)
                                                                                                                                                  ttttCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAg        >  2:698024/1‑149 (MQ=255)
                                                                                                                                                    ttCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTa     >  1:748414/1‑150 (MQ=255)
                                                                                                                                                      ccAGAAAAATACAAAAACTGGAGTTGCAATGATGAGCAAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGCCGCTAACTTTACCGCCATGATTTCTACCCGAATGACTGATGACGTGGTGGATAAACTAAAACAGCTAAAg  <  2:80912/151‑1 (MQ=255)
                                                                                                                                                      ccAGAAAAATAAAAAAACTGGATTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTAAATAAGTTGACAGAGTTTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTaa    <  2:820232/149‑1 (MQ=255)
                                                                                                                                                      |                                                                                                                                                       
CAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAG  >  NC_000913/3206285‑3206585

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: