Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,206,435 | 0 | C | T | 50.9% | 34.1 / 89.4 | 55 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
Reads supporting (aligned to +/- strand): ref base C (6/21); new base T (28/0); total (34/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.52e-10 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.51e-08 |
CAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAG > NC_000913/3206285‑3206585 | cAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTc < 1:855665/151‑1 (MQ=255) gCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTTcaaacaaaa > 1:545469/1‑148 (MQ=255) cATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAaaaaaaaaaa > 1:275257/1‑150 (MQ=255) aTTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGTATTTTTCCAGACAAATACAAAAACt < 1:47066/151‑1 (MQ=255) tGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCCGAcaaaaacaaaaaa > 2:64475/1‑147 (MQ=255) tGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATACAAAAAcatg > 1:80877/1‑148 (MQ=255) cATTCCCTGCTCTGGCACAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGt < 1:734722/151‑1 (MQ=255) aTTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGtt < 2:908447/151‑1 (MQ=255) aTTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGtt < 2:418536/151‑1 (MQ=255) cTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTCAGACAAAAAAAAAAAATTGAGTTGCCa > 2:253519/1‑150 (MQ=255) tGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTTCAAAAAAAAACAAAAAATGGGGTTGCCat > 1:764888/1‑150 (MQ=255) ctctGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATGTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCatg < 1:747129/149‑1 (MQ=255) ggCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAACACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCatgatg < 2:222197/148‑1 (MQ=255) aaTATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATACAAAAAATGGAGGTGCCATGATG‑AGCGaaa > 2:7041/1‑150 (MQ=255) aaTATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTTAAACAAAAAAAAAAAATGGAGGTGGCatggagggg > 1:494679/1‑140 (MQ=255) attcattcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAAACAAATACAAAAAATGGAGTTGCCATGATG‑AGCGAAAGta > 1:801255/1‑150 (MQ=255) ttcattcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTTCCGACAAAAAAAAAAAAAGGAGTTGCCATGATG‑AGGGGAAGaaa > 2:645428/1‑150 (MQ=255) cattcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAAAAAAAAAAATGGAGGTGCCATGATG‑AGCGAAAGtaa > 2:660340/1‑148 (MQ=255) attcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAAAAAAAAAAAAAAAATGGAGATGGCATGATG‑AAGGAAAAtaataa > 1:5971/1‑150 (MQ=255) attcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTTCCACAAATACAAAAAATTGAGATGGCAAGAAG‑AGCGGAAGgaataa > 2:851324/1‑150 (MQ=255) cTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCCGAAAAAAACAAAAAATGGAGGTGCCATGATG‑AGCGAAAGGAAAAAACa > 2:604245/1‑150 (MQ=255) ttATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAAAACAAAAAATGGAGTTGCCATGATG‑AGCGAAAGAAAAAAGCaa > 2:927036/1‑150 (MQ=255) aTTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACa < 2:501166/150‑1 (MQ=255) ttttCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATACAAAAACTGGAGGTGCCATGATG‑AGCGAAAGAAATAAACaaaa > 2:137606/1‑147 (MQ=255) tttCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGAATTTTTCACACAAAAAAAAAAAATTGGGGTGTCATGGTG‑AGGGAAAGtgataaaaaa > 1:198248/1‑142 (MQ=255) cgcgTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTTAAAAAAAAAAAAAAAATGGAGGTTTCATGGTG‑AGGGAAAGtaaaaaaaaaaa > 1:936402/1‑139 (MQ=255) gTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGGCAAAAAAAAAAAATGGAGTTGCCATGATG‑AGGGAAAGAAATAAACAAAAAGCAggg > 2:122997/1‑147 (MQ=255) tGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAAt < 1:442477/150‑1 (MQ=255) aTTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCCGAAAAAAAAAAAAAAAGGAGGTGCCATGATG‑AGCGGAAGAAAAAAAAAAAAGGCAGGGAaaaa > 2:587256/1‑150 (MQ=255) tCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGt < 2:936764/150‑1 (MQ=255) gAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGCGAATTTTTTCAGACAAAAACAAAAAATGGAGTTGCCCTGATG‑AGGGCAAATAAAAAGCAAAAGGCAGGGAATa > 2:46916/1‑143 (MQ=255) aaTTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTg < 2:23873/150‑1 (MQ=255) aTTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTc < 1:497244/151‑1 (MQ=255) ttACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTTACAACAAAAAAAAAACTGGAGTTGGCATGGTG‑AGGGAAAGGAATAAAAAACAGGCAGTGAaaaa > 1:291378/1‑134 (MQ=255) cATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTa < 2:887267/151‑1 (MQ=255) aCGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTAc < 1:713427/151‑1 (MQ=255) ggTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCg < 1:703734/151‑1 (MQ=255) gCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTCAAACAAAAACAAAAAATGGAGTTTGCATGGTGAAGGGAAAG‑AATAACCAAAAAGCAATGAATAAATTTACAAAGATTGTCGCTAACCTTTCcccc > 1:875174/1‑149 (MQ=255) aaaaaaTATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATg < 2:545721/150‑1 (MQ=255) aaaaaaTATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTGGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGGGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATg < 1:627064/150‑1 (MQ=255) aaTATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATAAAAAAAATGGAGGTGCCCTGATG‑AGCGAAAAGAATAAACAAAAAGCAGTGAATAAGATGACAGAGATTTTTGCTAAATTTTCCCCCATGAttt > 2:74442/1‑150 (MQ=255) ccACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCAAGACAAATAAAAAAACTGGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTAACAGAGATTGTCGCTAATTTTCCCGCCATGATTTCTACCCGAAt < 1:490010/151‑1 (MQ=255) cacaTTTTAGGTGGTAGTTTGTGGCGATGATTTTTTCCAGACAAATACAAAAACAGGGGTTGCCAGGATG‑AGCGAAAGTAATAAGCAACAGGCAGTAAATATGTTGCAGGAGTTTGTCGCTATTTTTACCGCCATGATTTCTACCCGAATg < 2:485142/151‑1 (MQ=255) ttttAGTGGTAGTTTGTGGCGGTGAATTTTTTCCAACAAAAACAAAAACTGGAGGTGGCATGGTG‑GGGGGAAGGAATAAAAAACAAGCAGTGAATAAGGTGACAGAGATTGTAGGTAACTTTACCGCCCTGGTTTTTTACCGAATGcc > 1:102274/1‑148 (MQ=255) ttttAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAAAACAAAAAATGGAGGTGGCCTGATG‑AGCGGAAGTAATAAGCAAAAAGCAGTGAATAAGTTGACAGAGATTGTCGCTAAATTTACCGCCATGATTTTTACCCCAATGcc > 2:854286/1‑148 (MQ=255) tAGTGGTAGTTTGTGGGGGTAAATTTTTCCAGACAAATACAAAAACTGGAGTGGCCATGATG‑AGCAAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCtgatg < 2:981596/150‑1 (MQ=255) tAGTGGTAGTTTGTGGCGGTGAGTTTTTTCCGCCAAACACAAAAAATGGAGGTTCCATGATG‑AGGGAAAGTAAAAAACAAAAGGGAGTGAAAAAGATGACAGAGGTTGTCGCTAACTTTACCCCCATGATTTTTTCCCGaaaacct > 1:704133/1‑141 (MQ=255) aGTGGTAGTTTGTGGCGGTGAATTTTTTCCGACAAACACAAAAACTGGGGGTGGCATGGTG‑GGGGGAAGGAAAAAACAAAACGCAGGGAAAAAAATGACAGAGAGTTTTGGTAAATTTAACCCCCCGATTTCTACCCCAAAGcc > 1:162820/1‑144 (MQ=255) tgGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATaa > 2:231688/1‑150 (MQ=255) ggCGGTAAATTTTTCCAGAAAAATACAAAAACTGGGGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGTTTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAAc < 2:471330/151‑1 (MQ=255) ggTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTa > 2:559218/1‑150 (MQ=255) gAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaaaa > 2:544608/1‑150 (MQ=255) aaTTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAAc < 2:480369/150‑1 (MQ=255) tttttCCAGACAAATACAAAAACTGGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGc > 1:595077/1‑151 (MQ=255) ttttCCAGACAAATACAAAAACTGGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAg > 2:698024/1‑149 (MQ=255) ttCCAGACAAATACAAAAACTGGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTa > 1:748414/1‑150 (MQ=255) ccAGAAAAATACAAAAACTGGAGTTGCAATGATG‑AGCAAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGCCGCTAACTTTACCGCCATGATTTCTACCCGAATGACTGATGACGTGGTGGATAAACTAAAACAGCTAAAg < 2:80912/151‑1 (MQ=255) ccAGAAAAATAAAAAAACTGGATTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTAAATAAGTTGACAGAGTTTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTaa < 2:820232/149‑1 (MQ=255) | CAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAG > NC_000913/3206285‑3206585 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |