Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,378,8020AC41.6% 160.7 / 16.3 90V48G (GTA→GGA) ampCpenicillin‑binding protein; beta‑lactamase, intrinsically weak
Reads supporting (aligned to +/- strand):  ref base A (48/4);  new base C (0/37);  total (48/42)
Fisher's exact test for biased strand distribution p-value = 6.81e-21
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAA‑CTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGG  >  NC_000913/4378654‑4378947
                                                                                                                                                             |                                                                                                                                                  
cccTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAA‑CTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑acc                                                                                                                                                  <  2:509907/151‑1 (MQ=255)
   tCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAA‑CTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑accgcc                                                                                                                                               >  2:396418/1‑151 (MQ=255)
   tCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAA‑CTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑accgcc                                                                                                                                               >  1:601837/1‑151 (MQ=255)
   tCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAA‑CTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑accgcc                                                                                                                                               >  1:800373/1‑151 (MQ=255)
    cGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAA‑CTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑accgcc                                                                                                                                               >  1:677286/1‑150 (MQ=255)
     gAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAA‑CTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑accgcc‑ac                                                                                                                                            >  2:153094/1‑151 (MQ=255)
       ccAATAGCGTCCCCACCAATCACGCCATTAAATGTTTTGCTGACCGAACCTAA‑CTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑accgcc‑accg                                                                                                                                          <  1:1367165/150‑1 (MQ=255)
         aaTAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAA‑CTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑accgcc‑accgcc                                                                                                                                        >  1:942311/1‑151 (MQ=255)
          aTAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAA‑CTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑Accgcc‑accgcca                                                                                                                                       <  1:50319/151‑1 (MQ=255)
           tAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAA‑CTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑Accgcc‑accgcca                                                                                                                                       <  2:700442/150‑1 (MQ=255)
                    caccaAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAA‑CTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGAt                                                                                                                             >  1:1191477/1‑151 (MQ=255)
                    caccaAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAA‑CTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGAt                                                                                                                             >  2:677881/1‑151 (MQ=255)
                        aggcagccgggtatttGTTTTGCGCGCCGGACCTAC‑CGCAAACATGTTTTGCGGTTTGAGGGTCTGTTTTTTGGC‑ATGCTCCGCA‑AGCCCCAGGGTAAAAG‑AAAATGTTTTTCCC‑TA‑AA‑AAA‑TC‑CCCGCC‑ACCGCCATACCCGGGATCttt                                                                                                                         <  2:576339/136‑1 (MQ=255)
                        aaccccGCAAGTAATTGTTTTGCTGACCAACCCTAA‑CTAAAACACGGTTTGCTGTGTGAGGGGCTGTTTTTTGGGGATG‑TCCGCATAGCCCCA‑GAAAAAGT‑AAAAGGTTTTCCCC‑TA‑AA‑AAT‑TT‑CCCCCC‑ACCGCCATACCCGGGATCtt                                                                                                                          <  1:719128/145‑1 (MQ=255)
                            aCGCAAGTAATTTTTTTGCTGCCCAAACCTAA‑CTCAAACATGTTTTGTTGTGTGCCGGGTTGTTTTTTGGCGATG‑TCCGCATAGCCCAA‑GGAAAAGT‑AAT‑AGGTTTTCCC‑TT‑AA‑AAATTT‑CCCGCC‑ACCGCCATACCCGGGATCTTttgt                                                                                                                      <  1:1197416/150‑1 (MQ=255)
                             cGCCAGTAAATGTTTTGCTGACCGAACCTAA‑CTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTttgttg                                                                                                                    >  2:1108605/1‑151 (MQ=255)
                               ccAGTAAATGTTTTGCTGCCCGAACCAAC‑CTCAAAAAGCTTTTGCTTTGTGTGGGGTTTCTTTTGGGCGTTG‑CCCCCACCCCCCGA‑GGTAAAGT‑AAAAAGGTTTCCCT‑TG‑AT‑AAA‑TT‑CCCCCC‑ACCGCCATACCCGGGATCt                                                                                                                           <  2:983747/142‑1 (MQ=255)
                               ccAGTAAATGTTTTGCTGACCGAACCTAA‑CTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGc                                                                                                                   >  2:109522/1‑150 (MQ=255)
                                   tAAATGTTTTGCTGACCGAACCTAA‑CTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCtat                                                                                                              >  2:579656/1‑151 (MQ=255)
                                    aatttttttGCTGCCCAACCCAAC‑CTAAAACACCTTTTGCTGTGTGGCGGTCTGTTTTTGGGCGATG‑TCCGCATACCCCCA‑GGAAAATA‑AATAAGTTTTCCCC‑TA‑AT‑AAA‑TT‑CCCCCC‑CCCGCCATACCCGGGATCTTTTGTTGCTCtat                                                                                                              <  1:49562/145‑1 (MQ=255)
                                    aatttttttGCTGCCCAAACCAAC‑CTAAAACACCTTTTGCTGTGTGACGGGTTTTTTTTTGGCGATG‑CCCGCATACCCCCA‑GGAAAAGT‑AATAAGTTTTCCCT‑TT‑AA‑AAA‑TT‑ACCCCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCta                                                                                                               <  1:709741/144‑1 (MQ=255)
                                    aatttttttGCTGACCGACCCTAA‑CTAAAACAGCTTTTGTTGTGTGGGGGGCTTTTTTTGGGCGTTG‑CCCGAATGCCCCGA‑GGTAAAGT‑AAAAGGTTTTACCC‑TA‑AA‑AAT‑TT‑CCCGCC‑ACCGCCATACCCGGGATCTTttgttg                                                                                                                    <  1:1333736/139‑1 (MQ=255)
                                    aaaTGTTTTGTTGA‑CGAACCCAACCACAAACAGTGTTTGTTTTGTGACGGGTTTTTTTTTGACATGG‑CCCCCACAGCCCCA‑GTTAAAGA‑AATAAGTTTTACCC‑TG‑AT‑AAA‑TC‑CCCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCta                                                                                                               <  2:248030/149‑1 (MQ=255)
                                    aaaTGTTTTGCTGACCGAACATAA‑CTCAAAGAACGATTGCTGTGGGACTGGCTGATTTTTGGCGATG‑TCCGCATAACCCCA‑GGAAAAGT‑ATTAAGGTTTACCC‑TG‑CT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCtat                                                                                                              >  2:1215614/1‑150 (MQ=255)
                                      aTGTTTTGCTGACCGAACCTAA‑CTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCtata                                                                                                             >  1:343690/1‑149 (MQ=255)
                                       tGTTTTGCTGACCGAACCTAA‑CTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGc                                                                                                          >  2:390707/1‑151 (MQ=255)
                                              cTGACCGAACCTAA‑CTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTa                                                                                                    >  1:1220906/1‑150 (MQ=255)
                                              cTGACCGAACCTAA‑CTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTa                                                                                                    >  2:544923/1‑150 (MQ=255)
                                              cTGACCGAACCTAA‑CTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTa                                                                                                    >  1:191878/1‑150 (MQ=255)
                                               tGACCGAACCTAA‑CTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAAt                                                                                                  >  1:1218653/1‑151 (MQ=255)
                                                 aCCGAACCTAA‑CTCAAACCACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCAAAGCCCCA‑GGTAAATT‑AATAAGGCTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATTAGCGGGGAAAtt                                                                                                 >  2:1113474/1‑150 (MQ=255)
                                                  ccGACCCAAA‑CTAAAACAACTTTTGGTGTGGGAGGGGCTGTTTTTGGGCGATG‑TCCACAGA‑CCCCA‑AGGAAAGT‑TAAAACGGTTCCCC‑TT‑AA‑AAA‑TTCCCCGCC‑CCCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATtg                                                                                                <  1:135698/150‑1 (MQ=255)
                                                  ccGAACCTAA‑CAAAAACAACGTTGGTTGTGTGAGGGGTTGTTTTTTGGCGAGC‑CCCGCATACCCCGG‑GGTAAGGT‑AAAAAGGTTTCCCC‑TA‑TA‑AAA‑TT‑CCCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCggg                                                                                                       <  2:1359189/143‑1 (MQ=255)
                                                   cagaccatacccaaaaCAACTTTTGTTGGGTGGGGGGCTTTTTTGTGGCGATC‑CCCGCATCCCCCCA‑GATAAAGA‑AAAAATTTTTCCCC‑TA‑AA‑AAA‑TC‑CCCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATtg                                                                                                <  2:182231/137‑1 (MQ=255)
                                                   cGATCCTAA‑CTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGGAAAGT‑AATAAGGTTAACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCGATACACGGGATCTTTTGTTGCTCTATAAGCGGGGTAATtgtg                                                                                              >  2:1201270/1‑151 (MQ=255)
                                                   cGAACCTAA‑CTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATtgtg                                                                                              >  1:1015836/1‑151 (MQ=255)
                                                   cGAACCTAA‑CTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATtgtg                                                                                              >  1:905506/1‑151 (MQ=255)
                                                      acccaaccaaaaaCAAGTTTTGTTGTGTGAGGGGCTTTTTTTTGGCGTTG‑TCCCCATACCCCCA‑GTTAAAGT‑AAT‑AGGTTTTCCC‑TGAAA‑AAA‑TC‑CCCGCA‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGca                                                                                            <  2:562153/141‑2 (MQ=255)
                                                        cTAA‑CTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATg                                                                                         >  1:1268631/1‑151 (MQ=255)
                                                        cTAA‑CTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATg                                                                                         >  1:662076/1‑151 (MQ=255)
                                                         tAA‑CTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGc                                                                                        >  1:203888/1‑151 (MQ=255)
                                                           aacaaaaaCACCTTTTGCTGTGGGACGGGTTGTTTTTTGGCGATG‑TCCGCATACCCCAA‑GGAAAAGT‑AATAAGGTTTCCCC‑TA‑AT‑AAA‑TT‑CCCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGca                                                                                       <  1:642325/146‑1 (MQ=255)
                                                           a‑CTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGcac                                                                                      >  1:148490/1‑151 (MQ=255)
                                                             cTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGcac                                                                                      >  2:1011572/1‑150 (MQ=255)
                                                                aaaCAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAat                                                                                   >  2:444684/1‑150 (MQ=255)
                                                                 aacaacGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAatat                                                                                 >  1:631439/1‑151 (MQ=255)
                                                                    agcGTGTGCTGGGTGAGGGGGTGTTTTTGGGGGATG‑CCCGCATGCCCCCA‑GATAAATA‑AATAAGTTTTCCCC‑TT‑AA‑AAA‑TC‑CCCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGt                                                                              <  2:603586/149‑1 (MQ=255)
                                                                        tttGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGAt                                                                          >  2:562342/1‑151 (MQ=255)
                                                                         ttGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGAtt                                                                         >  1:906740/1‑151 (MQ=255)
                                                                          tGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGAttt                                                                        >  2:1207533/1‑151 (MQ=255)
                                                                          tGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGAttt                                                                        >  1:986845/1‑151 (MQ=255)
                                                                           tgtgtgtgAGGGGTTTTTTTTTGGATTTG‑TCC‑AAAAGCCCCC‑GGTAAAATAAATAAGTTTTCCCT‑TA‑AA‑AAA‑TC‑GCCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGAttt                                                                        <  2:1277943/148‑1 (MQ=255)
                                                                             tgtgtgCCGGGTTGTTTTTGGGCGTTG‑CCCGCATACCCCCA‑GTTAAAGA‑AAAAAGTTTTCCCT‑TG‑AT‑AAA‑TT‑CCCCCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGAttt                                                                        <  1:244388/148‑1 (MQ=255)
                                                                              gtgtggggggttttttttgGGGGTTG‑TCCGAATACCCCCA‑GGAAAAGA‑AAAAAGTTTCACCC‑GG‑AT‑AAT‑TT‑CCCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGAttt                                                                        <  1:1376863/133‑1 (MQ=255)
                                                                                gggACGGGTTGTTTTTGGGCGTTG‑CCCGCATGCCCCCA‑GGAAAAGA‑AATAAGGTTTCCCC‑TA‑AA‑AAA‑TT‑CCCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATttgtt                                                                     <  1:745794/146‑1 (MQ=255)
                                                                                 tgaggggttcttttttGGCGATC‑ACCGCTTACCCCAA‑GGAAAATT‑AATAGTGTTTACCC‑TA‑AT‑AAA‑TC‑CCCGCC‑TCCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATttgtt                                                                     <  1:865258/136‑1 (MQ=255)
                                                                                 tgACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAgg                                                                 >  1:1126829/1‑151 (MQ=255)
                                                                                  gACGGGCTGTTTTTTGGCGAGC‑TCCCAACCCCCCGT‑GAAAAAGT‑AATAATTTTCACCC‑‑G‑AA‑AAA‑AT‑ACCCCCAACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATttgt                                                                      <  2:172048/145‑1 (MQ=255)
                                                                                     gggttttttttgGGCGTTT‑CCCGCAAAGCCCCG‑GGAAAAG‑‑AAAAAGTTTTTCCC‑CG‑AA‑AAA‑TTCCCCCCC‑GCCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAgggg                                                               <  1:15205/142‑1 (MQ=255)
                                                                                     gggCTGTTTTTTGGGGATG‑CCCGAAAAGCCCCA‑GAAAAAGT‑AAAAGGTTTTCCCC‑TA‑AA‑AAA‑TT‑CCCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGgc                                                              <  1:1112873/150‑1 (MQ=255)
                                                                                     gggCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGgc                                                              >  1:1311821/1‑150 (MQ=255)
                                                                                       gctgctTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGgcagc                                                           >  1:302264/1‑151 (MQ=255)
                                                                                           ttttttGGCGATG‑CCCGCATACCCCCG‑GGAAAAG‑‑AAAAAGGTTTTCCC‑TT‑AA‑AAA‑TTCCCCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCaaa                                                        <  1:334987/149‑1 (MQ=255)
                                                                                            ttttgGGCATTG‑TCCACATGCCCCCA‑GATAAATT‑AATAGGTTTTCCCC‑TA‑AA‑AAA‑TC‑CCCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGgca                                                             <  2:508651/144‑1 (MQ=255)
                                                                                               ttGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTgg                                                   >  2:20638/1‑151 (MQ=255)
                                                                                                tGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAAtgtg                                                    >  2:95355/1‑149 (MQ=255)
                                                                                                 ggCTATG‑TCCGCAACCCCCCA‑GTAAAATT‑AATAGGTTTCCCCC‑TA‑AA‑AAA‑TC‑CCCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGa                                                  <  2:508650/150‑1 (MQ=255)
                                                                                                   tgATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGc                                                >  2:1323153/2‑150 (MQ=255)
                                                                                                    gATG‑CCCGCATGGCCCCA‑GGTAAAGT‑AAAAAGTTTTCCCC‑TA‑AT‑AAT‑TT‑CCCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCa                                               <  1:822409/150‑1 (MQ=255)
                                                                                                     aTG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCa                                               >  2:995418/1‑149 (MQ=255)
                                                                                                     aTG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCa                                               >  2:141574/1‑149 (MQ=255)
                                                                                                         cccccaccgCCCGA‑GATAAAGA‑AAT‑ATGTTTACCCATA‑AA‑AAT‑TT‑CCCCCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAagag                                           <  2:4411/142‑1 (MQ=255)
                                                                                                            gCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCgg                                       >  2:1165900/1‑151 (MQ=255)
                                                                                                            gCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCgg                                       >  1:1209206/1‑151 (MQ=255)
                                                                                                                 accccaagaaaaaGA‑AATAAGTTTTACCC‑TA‑AA‑AAT‑TT‑CCCGCA‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCaa                                              <  1:190460/130‑1 (MQ=255)
                                                                                                                  cccgA‑GGAAAAGT‑AAAAAGGTTTCCCC‑TA‑AT‑AAT‑TT‑CCCCCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGtaa                                    <  1:773856/148‑1 (MQ=255)
                                                                                                                  ccccA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGtaatt                                  >  2:733121/1‑150 (MQ=255)
                                                                                                                  ccccA‑GGAAAAAT‑AATAAGTTTTCCCC‑TG‑AT‑AAT‑TC‑CCCCCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGtaatta                                 <  1:53931/151‑1 (MQ=255)
                                                                                                                   ccaa‑GGTAAAGT‑AATAAGGTTTCCCC‑TG‑AA‑AAA‑TT‑CCCGCC‑ACCGCCATACCCGGGATCTTTAGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGtaattaa                                <  1:36067/148‑1 (MQ=255)
                                                                                                                      a‑GGAAAAGA‑AAT‑AGGTTTCCCCGTA‑AT‑AAA‑TC‑CCCCCC‑TCCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATtaata                              <  2:677106/150‑1 (MQ=255)
                                                                                                                           aaaGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGgcg                         >  1:638389/1‑151 (MQ=255)
                                                                                                                           aaaGT‑AAAAGGTTTTCCCC‑TA‑AA‑AAA‑TC‑CCCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAg                            <  1:396516/148‑1 (MQ=255)
                                                                                                                            aaGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGgcg                         >  1:983157/1‑150 (MQ=255)
                                                                                                                             aaagaaaaaGGTTTTCCCTTA‑AT‑AAT‑TT‑CCCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAgg                           <  1:1358045/142‑1 (MQ=255)
                                                                                                                                 aataaGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCag                      >  1:59163/1‑149 (MQ=255)
                                                                                                                                  aaaaGGTTTTCCC‑TA‑AA‑AAATTT‑CCCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCaga                     <  1:1079485/148‑1 (MQ=255)
                                                                                                                                    aatgTTTA‑CC‑TG‑ATAAAA‑TT‑CCCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCagg                     <  2:1048869/144‑2 (MQ=255)
                                                                                                                                    aaGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGcgt                 >  2:398276/1‑151 (MQ=255)
                                                                                                                                     cggTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGcgtc                >  2:428673/2‑151 (MQ=255)
                                                                                                                                            ccc‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTg          >  1:855187/1‑150 (MQ=255)
                                                                                                                                             cc‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGa         >  1:463601/1‑150 (MQ=255)
                                                                                                                                              ccttaaT‑AAA‑TT‑CCCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGtttt           <  1:1068594/144‑1 (MQ=255)
                                                                                                                                              ccttaaT‑AAA‑TT‑CCCCCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGtt             <  1:145811/142‑1 (MQ=255)
                                                                                                                                              c‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAAc       >  1:1257121/1‑151 (MQ=255)
                                                                                                                                                 taaT‑AAT‑TT‑CCCCCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAAc       <  1:1155207/148‑1 (MQ=255)
                                                                                                                                                   aT‑AAT‑TT‑CCCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACAt     <  1:1130104/150‑1 (MQ=255)
                                                                                                                                                      aaa‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAgg  >  2:1166001/1‑151 (MQ=255)
                                                                                                                                                        a‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAAGAAGGCGAAGCGCGTCGtttt           >  2:1270686/1‑140 (MQ=255)
                                                                                                                                                             |                                                                                                                                                  
CCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAA‑CTCAAACAACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATG‑TCCGCATAGCCCCA‑GGTAAAGT‑AATAAGGTTTACCC‑TG‑AT‑AAA‑TT‑ACCGCC‑ACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGG  >  NC_000913/4378654‑4378947

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑