Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_00091329,4960TA45.4% 108.5 / 58.7 98intergenic (+301/‑155)dapB/carAdihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase
Reads supporting (aligned to +/- strand):  ref base T (40/13);  new base A (0/44);  total (40/58)
Fisher's exact test for biased strand distribution p-value = 2.93e-16
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 102 total aligned reads displayed.

TTTAATGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGGTTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAGTGAGTGAATATTCTCTGGA  >  NC_000913/29346‑29643
                                                                                                                                                        |                                                                                                                                                   
tttAATGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGGTTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAatat                                                                                                                                                     >  1:1260509/1‑151 (MQ=255)
   aaTGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGGTTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATaaa                                                                                                                                                  <  2:1144396/151‑1 (MQ=255)
   aaTGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGGTTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATaa                                                                                                                                                   >  1:950058/1‑150 (MQ=255)
    aTGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATCCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGGTTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATaaaa                                                                                                                                                 <  1:620502/151‑1 (MQ=255)
      gTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGGTTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATaaaaa                                                                                                                                                <  1:1191071/150‑1 (MQ=255)
       tAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGGTTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAAt                                                                                                                                              >  1:852058/1‑151 (MQ=255)
       tAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGGTTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAAt                                                                                                                                              >  2:1000213/1‑151 (MQ=255)
        aaaTTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGGTTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAATc                                                                                                                                             >  2:555037/1‑151 (MQ=255)
          aTTTTGACCATTTGGTCCACTTCTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGGTTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAATccc                                                                                                                                           <  1:1147131/151‑1 (MQ=255)
           ttttGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGGTTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAATCCCg                                                                                                                                          >  2:1210569/1‑151 (MQ=255)
            tttGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGGTTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑TAGCCACAAAATAATATAAAAAATCCCg                                                                                                                                          <  2:1012288/150‑1 (MQ=255)
                       ggTCCTTTTTTTTCTGCTCTTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGTTTAGATGATTTTTTTGT‑CGTTTAATGCCTGAAAAACATGCAT‑GACCCAAAAAATAATAAAAAAAACCCCGCCATTAAGTTGa                                                                                                                              <  1:696088/151‑1 (MQ=255)
                              ttttttCTGCTGTTTTTTTTTTCATTCATTCTTTTTGCTGCGAAAGCGTTTCCAAGAAAAGTTAAGATAATTTTTTTGT‑CGTTTAATCCTTAAAAAACATGCTT‑GATCCAAAAAATAAAATAAAAAATCCCGCCATTAAGTTGACtttt                                                                                                                         <  2:129291/149‑1 (MQ=255)
                              ttttttCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGGTTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACtttt                                                                                                                         >  1:526403/1‑149 (MQ=255)
                               tttttCTGTTCTTTTTTTTTATATGAAATTTTCTTGCTGCGCAAGCTTTTTCAAAAACAGGTAAGATTAT‑TTTTTGTGCGTTAAATCCTTAAAAAACTGGCTT‑GTGACAAAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAg                                                                                                                       <  2:940182/150‑1 (MQ=255)
                                ttttCTCCTCTTTTTTTTTTCATGCATTCTTCTTGCTGCGCAGGCGTTTTCCAAAACGGGTTAGAGGATTTTTTTGT‑CGTTTAATGCCTGAAAAACATGCAT‑GAGCCAAAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAgc                                                                                                                      <  1:935868/150‑1 (MQ=255)
                                      gCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGGTTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCat                                                                                                                >  2:703791/1‑150 (MQ=255)
                                        tCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGGTTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATAtc                                                                                                             >  2:891260/1‑151 (MQ=255)
                                           tttttATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGGTTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTcc                                                                                                          >  1:1167631/1‑151 (MQ=255)
                                            ttttttttCATTAAATTTTCTTGCGTCCCAAGGTTTTTCAAAAAAAGTTTAGATAATTTTTTTGC‑CGTTAAATGCATGAAAAACATTCTT‑GAGCCAAAAAATAATATAAAAAACCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTcc                                                                                                          <  2:1544097/150‑1 (MQ=255)
                                             tttATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGGTTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTcc                                                                                                          >  2:455250/1‑149 (MQ=255)
                                              ttATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGGTTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTcc                                                                                                          >  2:962135/1‑148 (MQ=255)
                                               tATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGGTTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGa                                                                                                       >  2:695955/1‑150 (MQ=255)
                                                 tttCATGCATTCTTCTTGCTGCGCAAGCTTTTTCCAAAACAGGTTAGATATTTTTTTTGT‑CTTTTAATGCCTGAAAACCATGCAT‑GACCCAAAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGa                                                                                                       <  1:98830/148‑1 (MQ=255)
                                                 tttCATGCATTCTTCTTGCGGCGCAAGCTTTTCCAAGAAAAGGTTAGATGATTTTTTTGT‑CGCTAAATGCCTGAAAAACATGCAG‑GACCCAAAAAAAAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAAt                                                                                                     <  1:111015/150‑1 (MQ=255)
                                                 tttCATGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGGTTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATg                                                                                                    >  1:189367/1‑151 (MQ=255)
                                                  ttCAGGCAATCTTCCTGCTGCGCCAGCGTTTTCCACAACAGGCTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGACCATATCTCCAGAATg                                                                                                    >  2:176927/1‑150 (MQ=255)
                                                           ttttcttGCTGCGCAAGCTTTTTCCAAAACAGGTTAGATGTTTTTTTTGT‑CGTTTAATGCCTGAAAAACATGCAT‑GACCCAAAAAAAAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGttt                                                                                           <  1:621451/148‑1 (MQ=255)
                                                           tcttctTGCTGCGCAAGCTTTTTCCAGAACAGGTTAGATGATTTTTTTGT‑CGTTTAATGCTTGAAAAACATGCAT‑GACCCAAAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGccgccg                                                                                              <  1:1188550/147‑1 (MQ=255)
                                                            cttcttGCTGCGCAAGCGTTTTCCAGAACAGGTTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGc                                                                                         >  2:1126105/1‑151 (MQ=255)
                                                             ttcttGCTGCGCAAGCTTTTTCAAAAACAGGTTAAATGATTTTTTTGT‑CATTTAATCCCTAAAAAACATGCAT‑GACCCAAAAAATAATAAAAAAACCCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGttt                                                                                           <  2:1100789/148‑1 (MQ=255)
                                                                ttgcggcgaacgttttttCCAAAACAGGTTATATATTTTTTTTTC‑CGATTAATGCCTAAAAAACTTGCTT‑GAGCCACAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCa                                                                                       <  2:98260/135‑1 (MQ=255)
                                                                 tgctgcGCAAGCGTTTTCCAGAACAGGTTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGa                                                                                     >  2:380235/1‑150 (MQ=255)
                                                                 tgcggcacaacgtttttCAAAAAGAGTTAAGATGATTTTTTTCT‑CGTTAAATCCTGGAAAAACTGGCAT‑GACCAAAAAAATAATAAAAAAAACCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGa                                                                                     <  2:961882/137‑1 (MQ=255)
                                                                       gcAAGCGTTTTCCAGAACAGGTTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATtcgt                                                                              >  1:263611/1‑151 (MQ=255)
                                                                         aaGCTTTTCCAAAAACAGTTTAGATGTTTTTTTTGT‑CTTTTAATCCCTGAAAAACATGCAT‑GAGCCAAAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATtcg                                                                               <  1:1186601/148‑1 (MQ=255)
                                                                            cGTTTTCCAGAACAGGTTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGt                                                                          >  2:624889/1‑150 (MQ=255)
                                                                              tttcCCAGAACAGGTTAGATGATTTTTTTGT‑CGTTAAATGCTTGAAAAACATGAAG‑GAGCCAAAAAATAAAAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTaa                                                                        <  1:1237328/150‑1 (MQ=255)
                                                                               tttCCAGAACAGGTTAGATGCTCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAg                                                                       >  2:784933/1‑150 (MQ=255)
                                                                               tttCCAGAACAGGTTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGc                                                                      >  1:1465848/1‑151 (MQ=255)
                                                                                   cAGAACAGGTTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGc                                                                      >  2:775635/1‑147 (MQ=255)
                                                                                   cAGAACAGGTTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGc                                                                      >  1:915461/1‑147 (MQ=255)
                                                                                    agaatgggTTAGATTTTTTTTTTGT‑CGCTTAGTGCCTGAAAAAAACGAAG‑GAACCAAAAAATAATATAAAAATGCCCGCCATTAAGTTGACTTTTAGAGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGAtt                                                                 <  2:1168443/145‑1 (MQ=255)
                                                                                    aaaaCAGGTTAGATGATTTTTTTGT‑CGTTAAATGCCTAAAAAACATGCAT‑GACCCAAAAAAAAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAg                                                                    <  1:1380347/146‑1 (MQ=255)
                                                                                    aGAACAGTTTAGATGATTTTTTTGT‑CGTTTAATGCCTGTAAAACATCCAG‑GAGCCAAAAAAAAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCa                                                                     <  1:1328952/147‑1 (MQ=255)
                                                                                    aGAACAGGTTAGATTATTTTTTTGT‑CGTTTAATGCTTGAAAAACATCCAG‑GAGCAAAAAAAAAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGAt                                                                  <  1:1188234/150‑1 (MQ=255)
                                                                                      aaCAGTTAAGATGTTTTTTTTGC‑CGTTAAATCCTTTTAAAACATGCAT‑GACCCACAAAATAAAAAAAAAATTCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGAt                                                                  <  2:30422/148‑1 (MQ=255)
                                                                                      aaCAGGTTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTg                                                               >  1:116473/1‑151 (MQ=255)
                                                                                       aCAGGTTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGc                                                              >  2:973853/1‑151 (MQ=255)
                                                                                          gttaaGATGATTTTTTTGT‑CGCTTAATGCTTAAAAAACATGCAT‑GACCCAAAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCa                                                             <  1:279627/145‑1 (MQ=255)
                                                                                            ttAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTg                                                          >  2:1508131/1‑150 (MQ=255)
                                                                                              aGATTATTTTTTTGT‑CTTTTAATGCCTATAAAACATGCTT‑GACCCACAAAAAAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGAtt                                                       <  2:1386669/151‑1 (MQ=255)
                                                                                               gatgatTTTTTTGT‑CGTTTAATGCCTGAAAAACATGCAT‑GACCCAAAAAATAATAAAAAAAACCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGAt                                                        <  1:426204/149‑1 (MQ=255)
                                                                                                  gatTTTTTTGT‑CGCTTAATGCCTGTAAACCATGCAT‑GAGCCAAAAAAAAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGAtt                                                       <  1:902979/147‑1 (MQ=255)
                                                                                                  gatTTTTTTGT‑CGCTAAATGCTTAAAAATCATGCAT‑TGGCCAAAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGAttt                                                      <  2:1054371/148‑1 (MQ=255)
                                                                                                   atttttttGT‑CTTTTAATGCTTAAAAAACATGCAT‑GCGCCAAAAAATAATAAAAAAAACCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACg                                                   <  2:788592/147‑1 (MQ=255)
                                                                                                    ttttttttT‑CGTTAAATGCCTAAAAAACATGCAG‑GAGCCAAAAAAAAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGt                                                  <  1:1567780/148‑1 (MQ=255)
                                                                                                    tttttttGT‑CGTTTAATGCCTTAAAAACATGCAT‑GAGCCAAAAAAAAATAAAAAAAACCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTAc                                                    <  1:247317/146‑1 (MQ=255)
                                                                                                      tttttGT‑CGTTTAATGCCTGAAAAACATGCAG‑GAGCAACAAAATAATAAAAAAAACCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACg                                                   <  2:155676/147‑1 (MQ=255)
                                                                                                        tttGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGtcatc                                              >  2:431999/1‑150 (MQ=255)
                                                                                                        tttGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTACAGAATGCCGCCGTTTGCTAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGtcttc                                              >  1:648289/1‑150 (MQ=255)
                                                                                                         ttGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTcatcat                                            >  1:995956/1‑151 (MQ=255)
                                                                                                            t‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATtgt                                         >  1:1390716/1‑151 (MQ=255)
                                                                                                              cGCTTAATGCCTGAAAAACATGAAG‑GAGCAAAAAAATAAAAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCAtt                                           <  1:990482/148‑1 (MQ=255)
                                                                                                                cTTAATGCCGAAAAAACTTGCAT‑GACCCACAAAAAAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATtgt                                         <  2:164861/148‑1 (MQ=255)
                                                                                                                 ttattgctttaaaaaCTTGCAT‑GACCCACAAAATAATAAAAAAAACCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATtgt                                         <  2:32763/136‑1 (MQ=255)
                                                                                                                  tAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAAtt                                    >  1:1298172/1‑151 (MQ=255)
                                                                                                                    aTGCCTGAAAAACATGCAT‑GACCCAAAAAAAAATAAAAAAAACCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTaa                                  <  1:202546/151‑1 (MQ=255)
                                                                                                                       cctaaaaaaCTTGCAT‑GACCAAAAAAAAAATATAAAAAACCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAatat                               <  2:1306514/146‑1 (MQ=255)
                                                                                                                       ccTGAAAAACAGGCAT‑GACCCAAAAAAAAAAAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAata                                <  1:200930/150‑1 (MQ=255)
                                                                                                                         tgaaaaaCAGGCAG‑GGGCCAAAAAAAAATAAAAAAAACCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTaa                                  <  1:1327281/143‑1 (MQ=255)
                                                                                                                            aaacaatgcatgGACCCAAAAAAAAATA‑AAAAAACCCCGCCATTAAGTGGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTTAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTaa                                  <  2:390119/138‑1 (MQ=255)
                                                                                                                            aaaaCATGCAT‑GGGCCAAAAAATAATAAAAAAAACCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTaa                                  <  1:1474416/143‑1 (MQ=255)
                                                                                                                             aaaCATGCAT‑GAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAAt                         >  1:1182109/1‑151 (MQ=255)
                                                                                                                               aCATGCAT‑GAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATa                        >  2:1091127/1‑150 (MQ=255)
                                                                                                                               aCATGCAT‑GAGCCAAAAAAAAATAAAAAAAACCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATaa                       <  1:350678/151‑1 (MQ=255)
                                                                                                                               aCATGCAT‑GACCCAAAAAAAAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATa                        <  1:30068/150‑1 (MQ=255)
                                                                                                                                catgcat‑gAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCCGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATCCAAATaa                       >  2:179579/1‑150 (MQ=255)
                                                                                                                                  atgaatggcccAAAAAAAAAAATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATaaa                      <  2:1137364/141‑1 (MQ=255)
                                                                                                                                    cat‑gACCCACAAAATAATAAAAAAAACCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATa                        <  2:1041274/145‑1 (MQ=255)
                                                                                                                                     aataacccAAAAAATAATAAAAAAAACCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAagtga                  <  2:1252980/145‑1 (MQ=255)
                                                                                                                                      t‑gACCCAAAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATaaa                      <  1:1183700/145‑1 (MQ=255)
                                                                                                                                      atgtcccACAAAATAGAAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATAGCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGTTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATAGGCAAATa                        <  2:1375288/139‑1 (MQ=255)
                                                                                                                                        gacccAAAAAAAAAAAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAagtgagtg               <  1:640/148‑1 (MQ=255)
                                                                                                                                        gAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAagtgagtg               >  1:536711/1‑151 (MQ=255)
                                                                                                                                        gAGCCAAAAAAAAAAAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAagtgagtg               <  1:555285/151‑1 (MQ=255)
                                                                                                                                         accaaaaaaaaaaaaaaaaaaaCCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAag                     <  1:932175/138‑1 (MQ=255)
                                                                                                                                         aGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAagtgagtg               >  1:200455/1‑150 (MQ=255)
                                                                                                                                         aGCCACAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAagtga                  <  2:328529/147‑1 (MQ=255)
                                                                                                                                          ccaaaaaaaTAAAAAAAAAACTCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAagtgag                 <  2:430296/142‑1 (MQ=255)
                                                                                                                                           ccACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAGTGAGTGAat            >  1:85933/1‑151 (MQ=255)
                                                                                                                                             acaAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAGTGAGTGAatat          >  1:1232803/1‑151 (MQ=255)
                                                                                                                                             acaAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAGTGAGTGAatat          >  1:28739/1‑151 (MQ=255)
                                                                                                                                             aaaaaaaaATAAAAAAAACCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAGTGAGTGAata           <  1:211943/148‑1 (MQ=255)
                                                                                                                                               aaaaTAAAAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAGTGAGTGAATATtc        <  1:1327129/151‑1 (MQ=255)
                                                                                                                                                aaaTAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAGTGAGTGAATATtct       <  1:1342271/151‑1 (MQ=255)
                                                                                                                                                aaaTAATAAAAAAAACCCCGCCATTAAGTTGACTTTTAGCGCACATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAGTGAGTGAATAtt         <  2:1072107/149‑1 (MQ=255)
                                                                                                                                                  ataataTAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAGTGAGTGAATATTctct     >  2:669093/1‑151 (MQ=255)
                                                                                                                                                     atatAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAGTGAGTGAATATTCTCTGGa  <  2:664490/151‑1 (MQ=255)
                                                                                                                                                      tataAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAGTGAGTGAATATTCTCTgg   >  2:459529/1‑149 (MQ=255)
                                                                                                                                                        |                                                                                                                                                   
TTTAATGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGGTTAGATGATCTTTTTGT‑CGCTTAATGCCTGTAAAACATGCAT‑GAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAGTGAGTGAATATTCTCTGGA  >  NC_000913/29346‑29643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑