| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,332,309 | 0 | A | C | 38.1% | 136.2 / 35.1 | 84 | L322V (TTA→GTA) | basS | sensory histidine kinase in two‑component regulatory system with BasR |
| Reads supporting (aligned to +/- strand): ref base A (41/11); new base C (0/32); total (41/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.91e-14 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGC > NC_000913/4332160‑4332455 | gCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTaa < 1:549403/150‑1 (MQ=255) gtggtCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑cccc > 1:769370/1‑150 (MQ=255) tggtCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCa < 2:1409852/150‑1 (MQ=255) ggtCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAg < 1:806863/150‑1 (MQ=255) ggtCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGa < 1:1637276/151‑1 (MQ=255) gtCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGAc > 1:1587649/1‑151 (MQ=255) gtCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGAc < 1:326344/151‑1 (MQ=255) agcagcTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑aa < 2:440214/151‑1 (MQ=255) ctttctttATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCg > 1:1628665/1‑151 (MQ=255) ttctttATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCg < 1:1077861/149‑1 (MQ=255) tctttATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGcc > 2:1076965/1‑150 (MQ=255) ctttATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCAt > 1:319085/1‑151 (MQ=255) tttATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCAt > 1:1494525/1‑150 (MQ=255) atatCTGGTTTGCCACGGACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGAGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAAc > 2:1122958/1‑150 (MQ=255) tatCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACgg > 1:256936/1‑151 (MQ=255) tGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGAGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGt > 2:654428/1‑151 (MQ=255) ccctttctgttttttcttCAGCCGTCCCCGGCCCCGCGGGCGGGATTTCTTTTCCCGTTTTT‑GCAGAAAAAC‑CTC‑CCCGTGATCCATTTGTGTAATGCGGCTAACAATACTTAC‑CCCCACCCC‑AA‑TCCCGCCATAACGGCTGTCCATACGt < 1:1407041/139‑1 (MQ=255) cccttccTGTTCTTTCTTCGGCCGACCCCCGGCCCGGGTGCGGAATTTCTCTTCCTGTTTTT‑GCAAAAAAAC‑CCC‑CCCGTGATACAACTGTATAATGGTGCTGAAAATACCAAC‑CCCCAGCCC‑AT‑CCCCGCCATAACGGCTGTCCATACGt < 2:568372/145‑1 (MQ=255) cACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATACGt > 1:283183/1‑151 (MQ=255) gTACTGTTTTTTCTCCAGCCGCCCCCAGCCCCGGGTGCGGGAGGTCTCTTG‑CGGTTTT‑GGAAGAAAAACCCC‑CCCGTGTTCAATCTGTGTAATGCGGCTGACAATCCTACC‑CCCAACCCC‑AA‑TCCCGCCATAACGGCTGTCCATACGTAc < 1:1212232/150‑1 (MQ=255) aCTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACaa > 1:181943/1‑150 (MQ=255) cTGATCTTTCTTCAGCCGGCCCCAGTCCCGCGTGCCGGAATTCTTTTGCCGGTTTG‑GCAGAAAAAA‑CTT‑CCCGAGATGCAACTGTGTAAGGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCTGCCATAACGGCTGTCCATACGTACaaa < 1:1228635/150‑1 (MQ=255) tGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACg > 1:635588/1‑151 (MQ=255) tGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACg > 1:1210853/1‑151 (MQ=255) gttctttcttCAGCCGCCCCCGGCCCCGCGGGGCGAAATTCTCTGGCCGTTTTG‑GAAGAAAAAC‑CTC‑CCCGTGATGAAATTGTTAAATGCGGCTAAAAATCCTAAC‑CCCCAGCCC‑AA‑CCCCGCCATAACGGCTGTCCATACGTACa < 1:425571/144‑1 (MQ=255) tttttctcCACCCGTCCCCGGCCCCGCGGGCGGGAATTCTCTGGCGGTTTTG‑GCAGAAAAAC‑CTC‑CCCGTGATCAAACTGTTTAATGCGGCTAAAAATAC‑TAA‑CCCCAAGCC‑AACCCCCGCCATAACGGCTGTCCATACGTACAAAc < 1:459524/145‑1 (MQ=255) ttttctccccgCCGTCCCCGGCCCCGGGGGCGGGGTGTCTAGTGCCGTTTTG‑GAAAGAAACC‑CGG‑CCGGTGGTGCAACTGGGAAGGGCGGCGAACAATCCTAAC‑CCCCAAACC‑AC‑CCCCGCCATAACGGCTGTCCATACGTACa < 2:536142/134‑1 (MQ=255) tttcttCCGCCGTCCCCGGCCCCGCGTGCCGAAATTCTTTTG‑CGGTTTT‑GGAAGAAAAACCGG‑CCCGTGATCAAACTGTTTAATGCGGCTAAAAATCCTAAC‑CCCCACCCC‑AA‑CCCCGCCATAACGGCTGTCCATACGTACAAACGCttt < 1:534923/150‑1 (MQ=255) tttctccccccGTCCCCGGCCCCGCGGGCGGGATGTCTTTTGCCGTTTTT‑GCAGAAAAAC‑CTG‑CCCGTGATGCAATTGTGTAAGGCGGCTAACAATACTTAC‑CCCCAGCCC‑AA‑CCCCGCCATAACGGCTGTCCATACGTACAAACg < 1:2474/137‑1 (MQ=255) tttctcCACCCGCCCCCAGCCCCGCGCGCCGAATGTCTC‑TGGCGGTTTT‑GGAAGAAAAA‑CCGCCCCGTGATGCACTTGTGAAAGGCGGCTAAAAATCCTAAC‑CCCCAGCCC‑AA‑CCCCGCCATAACGGCTGTCCATACGTACAAACGCttt < 1:990306/150‑1 (MQ=255) cttcAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTc > 1:150780/1‑151 (MQ=255) ctccacccGCACCCGCGCCCGCGTGCCGGATGTCTCTTGCCGTTTTA‑GAAGAAAAAC‑CCC‑CCCGTGAGCCAACTGTGTAATGCGGCTCACAATCCTAAA‑CCCAACACC‑AC‑CCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTa < 2:213164/142‑1 (MQ=255) ttcAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTc > 1:829154/1‑150 (MQ=255) ttcAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTc > 2:539122/1‑150 (MQ=255) ttcAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTc > 1:1467328/1‑150 (MQ=255) tccAGCCGTCCCCGGCCCCGCGGGCGGGAATTCTCTTGCGGTTTTT‑GAAGAAAAAA‑CTC‑CCCGTGATACAATTGTGTAATGCGGCTGACAATATTAAC‑CCCCACACC‑AA‑CCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTAc < 1:1193578/146‑1 (MQ=255) cggccgcccccgcgCCCGCGTGCCGGAGGTCTCTTGCCGGTTGA‑CCAGAAAAAC‑CTG‑CCGGGGCTACATTTTTGTACGGCGGCTCACAAAACCAAC‑CCCCAGTAC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCt < 2:634291/129‑1 (MQ=255) aGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACt > 1:921899/1‑151 (MQ=255) cctcccccggccccGCG‑GCCGGAAGTTCTTTGGCGGTTTTGGAAAGAAAAC‑CCC‑CCCGTAATCCAATTGTGTAGTGGGCCTGAAAACACTAAC‑CCCCAGCCC‑AA‑CCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCa < 1:1244719/135‑1 (MQ=255) ccgccccaaGGCCCGCGTGCGGGAACTCTCTTGCGGTTTTT‑GGAGAAAAAC‑CTC‑CCCGTTATCAATCTTTTAAATGCGCCAAAAAATCCTACC‑CCCCACCCC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACt < 1:1504416/141‑1 (MQ=255) ccGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTcc > 2:1492283/1‑151 (MQ=255) cGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTccc > 1:798968/1‑151 (MQ=255) cccggccgcgcgGGCGGAAAGTCTTTGGCTGTTTTT‑GAAAAAAAAA‑CGG‑CCTGTAATACACGTTTGAAATGCGGCTAAAAATACTAAC‑CCCCAAACA‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCg < 1:360204/141‑1 (MQ=255) cccggccccGCGTGCCGGAATTTTTTTG‑CGGTTTT‑GGAAAAAAAACCCC‑CCCGTGATGCAACTGTGTAAGGCGGCTAACAATCCTACC‑CCCCACCCC‑AC‑CCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTc < 1:284963/134‑1 (MQ=255) cgggCCCGCGTGCCGGAATTTTCTGGCTGGTTTT‑GAAAAAAACC‑CCG‑CCCGTGATGCATGTATGTAGCGCGGCACACAATACTAAC‑CCCCAGCCC‑AC‑CCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCAtt < 2:1626337/149‑1 (MQ=255) gccccGCGGCCCGGATTTCTTTTG‑CGGTTTT‑GGAAGAAAAACCCC‑CCCGTGAGCCAACTGTTAAATGGGGCTAACAAAACTAAC‑CCCCAGACC‑AA‑CCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCAt < 1:764571/146‑1 (MQ=255) gCCCGCGTGCCGGAAGTCTCTTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTAc > 1:859421/1‑151 (MQ=255) cgggacttccctggcGGTTTTGGCAGAAAAAC‑CCC‑CCCGGGAGCCATTTGTGTATTGCCGCGAACAATACTAAC‑CCCCACACA‑AA‑CCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCtcat < 1:1500440/134‑1 (MQ=255) ggAGGTCTCTGGCTGTTTTG‑GAAGAAAAAC‑CTG‑CCCGTAATGCATTTTTGTAATGCGGCTAACAATTCTAAC‑CCCCACCCA‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCaa < 1:964632/149‑1 (MQ=255) gaaaGTCTCTTGCGGTTTTG‑GAAGAAAAAA‑CCC‑CCCGTGATGCATTTGTGTAAGGCGGCAAAAAATACTCAC‑CCCCAAACC‑AA‑CCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCtcatca < 1:521483/146‑1 (MQ=255) tctTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTc > 1:1508602/1‑151 (MQ=255) ttGCCTTTTTC‑GCAGAAAAAA‑CTG‑CCCGTAATAATACTGTGTTGTGGGGCTGACATTACTAAA‑CCCCAGCAC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATAc < 2:955304/143‑1 (MQ=255) ggcGGTTTT‑GAAGAAAACC‑CTC‑CCCTGGATGCAATTGTGTAAGGCGTCCAAAATTACTAAC‑CCCCACCCA‑AA‑CCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTc < 2:1504988/145‑1 (MQ=255) cGGTTTT‑GGAAGAAAAACCTC‑CCCGTGATCCAATTTTTTAAGGCGGCTAAAAATCCTCAC‑CCCCACACC‑AA‑CCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCt < 1:1075852/142‑1 (MQ=255) ggcttt‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCAt > 2:111728/4‑150 (MQ=255) gTTTT‑GGAAGAAAAACCTC‑CCCGGGAGCAAACTGTGTAGGGCGGCTAAAAATACTAAC‑CCCCAACCA‑AA‑CCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCAt < 1:635790/150‑1 (MQ=255) tttggaagaaaaac‑CTC‑CCCGGGATGCAACTGTGTAAGGCGGCTAAAAATACTAAC‑CCCCAAACA‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTg < 1:1064096/130‑1 (MQ=255) ttt‑GCAGAAAAAC‑CTC‑CCGGTGATCAATCTGTTTAAGGCGCCTAAAAATACTCAC‑CCCCAGCCC‑AA‑CCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCATCtt < 1:651046/150‑1 (MQ=255) aaaaaa‑CGC‑CCGGTGATGCACCTGTGTAATGGGGCTAAAAATCCTCAC‑CCCAAGACA‑AA‑CCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCATCTTCAACt < 1:943676/147‑1 (MQ=255) caaaa‑CTG‑CCCGCGCTGCAACTGCGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCCTAACGCCTGTCCATACGCACAAACGCTTTCCTCACCTCCCCGCATTTCCTCTCATCCATCCCTGGTCCTTCATCTTCAACTGcc > 2:676281/2‑150 (MQ=255) aaaa‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCAt > 1:320835/1‑151 (MQ=255) tG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCATGAcc > 1:1429311/1‑150 (MQ=255) tG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATAAGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCATGAcc > 2:1142127/1‑150 (MQ=255) ctggTGATCGAACTGTGAAATGCGGCTAACAATACATAC‑CCCCACACC‑AA‑CCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCATGa < 2:1364427/143‑1 (MQ=255) ccggTGATGAAATTGTGAAACGCGGCAAAAAATTCTAAC‑CCCCACCCC‑AA‑CCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCATGACCGCt < 1:972294/148‑1 (MQ=255) ccctatagccacgtgttTATTGCGCCTCACAA‑ACTTAACCCCCACACC‑AA‑CCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCATGAcc < 1:110756/135‑1 (MQ=255) cccGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCATGACCGCt > 1:792854/1‑151 (MQ=255) accGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCATGACCGc > 2:447136/2‑150 (MQ=255) ccGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCATGACCGCTc > 2:410972/1‑151 (MQ=255) acccAACTGTGTAAGGGGGCAGACAATACTAAC‑CCCCACCCC‑AC‑CCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCATGACCGCTCCGTCa < 1:17474/148‑1 (MQ=255) gCAACTGTGTAATGCGGCTGCCAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACAGCTGTCCATAAGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCCATACCTGGTCCTTCATCTTCAACTGCCACGACCGCTCCGTCa > 2:1378302/1‑149 (MQ=255) cAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCATGACCGCTCCGTCAtct > 2:826027/1‑151 (MQ=255) aaCTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCATGACCGCTCCGTCAtctt > 2:1480662/1‑151 (MQ=255) actGCGCCTAAAAATCCTCAC‑CCCCACACA‑AT‑CCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAg < 1:343661/148‑1 (MQ=255) aaTGCGGCTGAAAATACTTAA‑CCCCAGAAC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGc > 2:75391/1‑151 (MQ=255) aTGCGGCTGAAAATACTCCC‑CCCCACACC‑AA‑CCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCATGACCGCTCCGTCAt < 2:858653/139‑1 (MQ=255) tGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACGCCGGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAACACCTGGTCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCtt > 2:1172444/1‑151 (MQ=255) cGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTa > 1:1236855/1‑150 (MQ=255) ggcaaaCAATACTCAC‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTa < 1:1400962/144‑1 (MQ=255) gccTGAAAATACTCAC‑CCCCACCCC‑AA‑CCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCtt < 1:1471034/146‑1 (MQ=255) tGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATCAt > 1:970419/1‑151 (MQ=255) aCAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATa > 1:1286895/1‑150 (MQ=255) cagccctaaa‑CCCCAACCCAAA‑TCCCGCCATACCGGCTGTCCATACGTACAAACGCTTTCCTCAACTCCCCGCATTTACTCGCATCAATGCCTGGTCCTTCAGCTTCAACTGCCATGTCCGCTCCGTGATCTTCTTGCAGCTTAATCAt < 2:382952/141‑1 (MQ=255) aCTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTtg > 2:567812/1‑151 (MQ=255) ttAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCATGACCGCTCCGTCCTCTTCTTGCAGCTTAATCATAATGTtgc > 2:1603160/1‑150 (MQ=255) ttAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTtg > 2:166729/1‑149 (MQ=255) | GCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTT‑GCAGGAAAAA‑CTG‑CCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAA‑CCCCAGACC‑AA‑TCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGC > NC_000913/4332160‑4332455 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |