| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,636,300 | T→G | pseudogene (68/528 nt) | nohQ ← | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,636,300 | 0 | T | G | 99.1% | 316.7 / NA | 106 | pseudogene (68/528 nt) | nohQ | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base G (65/40); total (65/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.87e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 | |||||||||||
Only 100 of 106 total aligned reads displayed.
CTGCCGCAGTTCTTCAACTTCCCGGCGCAGCTTTTCGTTCTCAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTC > NC_000913/1636155‑1636447 | cTGCCGCAGTTCTTCAACTTCCCGGCGCAGCTTTTCGTTCTCAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGcc > 2:1543637/1‑149 (MQ=38) tGCCGCAGTTCTTCAACTTCCCGGCGCAGCTTTTCGTTCTCAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGt > 1:501523/1‑151 (MQ=38) tGCCGCAGTTCTTCAACTTCCCGGCGCAGCTTTTCGTTCTCAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGt > 1:1333853/1‑151 (MQ=38) tGCCGCAGTTCTTCAACTTCCCGGCGCAGCTTTTCGTTCTCAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGt > 1:1098480/1‑151 (MQ=38) gCCGCAGTTCTTCAACTTCCCGGCGCAGCTTTTCGTTCTCAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGtt > 2:1177167/1‑151 (MQ=38) cAGTTCTTCAACTTCCCGGCGCAGCTTTTCGTTCTCAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTg > 2:508112/1‑150 (MQ=25) tcttcAACTGCCCGGCGCAGCTTTTCGTTCTCAAGTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTGCTGAATg < 2:661216/150‑1 (MQ=255) ttcAACTTCCCGGCGCAGCTTTTCGTTCTCAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATgg > 2:444334/1‑149 (MQ=25) tcAACTTCCCGGCGCAGCTTTTCGTTCTCAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATgg < 1:1116720/148‑1 (MQ=25) tcAACTTCCCGGCGCAGCTTTTCGTTCTCAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGt < 1:558439/149‑1 (MQ=25) tcAACTTCCCGGCGCAGCTTTTCGTTCTCAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTAc > 1:1374622/1‑151 (MQ=25) cAACTTCCCGGCGCAGCTTTTCGTTCTCAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTAc < 1:964441/150‑1 (MQ=25) cAACTTCCCGGCGCAGCTTTTCGTTCTCAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTAc < 1:1574864/150‑1 (MQ=25) cAACTTCCCGGCGCAGCTTTTCGTTCTCAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACg < 2:351045/151‑1 (MQ=25) cTTCCCGGCGCAGCTTTTCGTTCTCAATTTCAGCATCCCTTTCGGCATACCATCTTATAACTGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGAt > 1:674501/1‑151 (MQ=25) cGGCGCAGCTTTTCGTTCTCAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCg > 2:1629132/1‑151 (MQ=18) cGGAGCATCTTTTCGTTCTCAATTTCAGCATCCCTTTCGGCGTACCATCTTATAACGGCGGTAGAGTCATCAAGCACCTCATTACCCTTTCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGTCAGTTCTGAATGGTACGGATCCTc > 2:1176550/1‑150 (MQ=11) cgcAGCTTTTCGTTCTCAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCAc > 1:329933/1‑151 (MQ=18) cAGCTTTTCGTTCTCAATTTCAGCATCCCTTTCGGCATGCCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCg < 1:627108/151‑1 (MQ=18) cAGCTTTTCGTTCTCAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCg > 2:88289/1‑151 (MQ=18) aGCTTTTCGTTCTCAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCg > 1:1009455/1‑150 (MQ=18) gCTTTTCGTTCTCAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCTCCTCATTGCCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGaa < 2:1445991/151‑1 (MQ=16) tttCGTTCTCAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGaaaa < 1:954182/150‑1 (MQ=18) ttCGTTCTCAATTTCAGCATCCCTTTCGTCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAAt < 2:1582527/150‑1 (MQ=18) cGTTCTCAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTc > 1:758291/1‑151 (MQ=18) gTTCTCAATTTCAGCATCCCTGTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCGCCTCATTGCCCTTGCCGCCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTc < 1:1596541/150‑1 (MQ=255) cAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTcagcca < 2:645888/150‑1 (MQ=18) cAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTcagc < 1:1617897/148‑1 (MQ=18) aTTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAgct > 1:1479253/1‑151 (MQ=18) aTTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAgct > 1:1292146/1‑151 (MQ=18) ttCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTATCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAgctgc > 2:1142581/1‑151 (MQ=18) cAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCtt < 1:687623/151‑1 (MQ=18) cAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCtt < 1:1162583/151‑1 (MQ=18) cATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCttttt < 2:1393337/151‑1 (MQ=18) cATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCttttt > 1:342493/1‑151 (MQ=18) cccTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCTGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTttgtt > 1:1007389/1‑151 (MQ=18) ccTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTttgttg < 2:947249/151‑1 (MQ=18) ttCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACt > 1:432539/1‑151 (MQ=18) tCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACtt > 1:1570703/1‑151 (MQ=18) gCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTcc > 1:270543/1‑150 (MQ=18) gCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCa < 1:51009/151‑1 (MQ=18) cATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCAt < 1:387762/151‑1 (MQ=18) aTACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCCCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCAtt > 2:536974/1‑151 (MQ=18) ccATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGtt < 1:483647/151‑1 (MQ=25) aTCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTc > 2:1036563/1‑150 (MQ=25) cTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCAtt > 2:1149786/1‑151 (MQ=37) tataACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTcc > 1:1487940/1‑151 (MQ=25) tataACGGCGGCAGAATCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTcc > 2:1020182/1‑151 (MQ=25) ataACGGCGGCAGAGTCATAAAGCACCTCATTACCCTCGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGGACGGATACTCGCACCGAAAATGGCAGCCAGCGGCTTTTTGTTGACTTCCATTGTTCATTcc > 2:572211/1‑150 (MQ=255) taACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCAc > 1:1277796/1‑151 (MQ=25) taACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCAc > 2:139128/1‑151 (MQ=25) taACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCAc > 1:1126020/1‑151 (MQ=25) aaCGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACg > 1:420171/1‑151 (MQ=21) aaCGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACg > 1:973711/1‑151 (MQ=21) ggcAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCaaa < 2:507294/151‑1 (MQ=25) agagTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAAc > 1:1394554/1‑151 (MQ=25) agagTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAAc > 1:246049/1‑151 (MQ=25) agagTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAAc > 1:264117/1‑151 (MQ=25) agagTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAAc > 1:284445/1‑151 (MQ=25) gagTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACa < 1:965935/151‑1 (MQ=25) agTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAAc > 1:637480/1‑149 (MQ=25) tCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACag > 2:1638170/1‑149 (MQ=25) tAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGaa < 2:559724/150‑1 (MQ=25) aaaGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACagag > 2:905630/1‑147 (MQ=25) aaaGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGaaa < 2:693246/150‑1 (MQ=25) aaaGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGaaa < 2:1473309/150‑1 (MQ=25) aGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGa < 1:871253/151‑1 (MQ=25) gCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGaa < 2:1528294/151‑1 (MQ=25) cTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAAc > 2:1028900/1‑149 (MQ=25) cTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACg > 1:1078778/1‑150 (MQ=25) cATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGa < 1:1094921/149‑1 (MQ=25) cATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACa < 2:1291202/151‑1 (MQ=25) ttACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACag < 2:1623609/150‑1 (MQ=25) aCCCTTCACTCCGCCTCGCAGGACGGACACTCCCTTAGCCTGCCAGCTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTTACTTCCATTGTGCATGCCACGGCCAAAAACAGAGAAAGGAAAcagga < 2:196074/147‑5 (MQ=11) ccTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGcc > 1:191349/1‑151 (MQ=25) ccTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGcc > 1:1630467/1‑151 (MQ=25) cTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGccc > 2:1100953/1‑151 (MQ=37) ttGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGccc > 1:95888/1‑150 (MQ=37) gCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCaa < 1:982353/150‑1 (MQ=38) ccACCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCaaa > 2:1313388/1‑150 (MQ=38) aCCGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGc > 1:1635238/1‑151 (MQ=38) cGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTc > 1:1455377/1‑151 (MQ=38) cGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTc < 1:1218833/151‑1 (MQ=38) cGCCTCGCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTc > 1:766479/1‑151 (MQ=38) gCAGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTc < 2:1211276/151‑1 (MQ=255) aGAACGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAg < 1:1121630/151‑1 (MQ=255) aCGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCAc > 2:1494391/1‑151 (MQ=255) cGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCAcc > 2:1631255/1‑151 (MQ=255) cGGGCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCAcc > 2:511445/1‑151 (MQ=255) ggCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTg < 1:961883/151‑1 (MQ=255) gCATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGt > 1:1631478/1‑151 (MQ=255) cATTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTc > 1:736089/1‑151 (MQ=255) aTTCCCTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCg > 1:1516141/1‑151 (MQ=255) ccTGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTc > 1:1034751/1‑151 (MQ=255) tGTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGCAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCct > 2:758532/1‑151 (MQ=255) tGTTCCGGACAGTTTTGAATGGTACGGATACTCGCCCCGAAAATGTCTGCCAACGGCTTTTTGTTGACTTCCATTGTTCATTCAACGGACAAAAACAGAGGAAGAAAACTACAGATGGCCAAAACCTCGGCTTCAGCAACTGTCGTTTcc > 2:713881/1‑150 (MQ=11) gTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCct < 2:202454/150‑1 (MQ=255) gTTCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCct < 1:371458/150‑1 (MQ=255) tCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCctttc > 2:180011/1‑151 (MQ=255) tCCGGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCcttt < 1:772923/150‑1 (MQ=255) | CTGCCGCAGTTCTTCAACTTCCCGGCGCAGCTTTTCGTTCTCAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTC > NC_000913/1636155‑1636447 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |