| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 599,579 | 0 | T | G | 42.5% | 128.9 / 10.2 | 81 | V289G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| Reads supporting (aligned to +/- strand): ref base T (5/41); new base G (34/0); total (40/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.31e-17 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTC > NC_000913/599434‑599727 | gacgacTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGATcc > 2:372479/1‑151 (MQ=255) acgacTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCt < 1:1049938/151‑1 (MQ=255) cgacTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGTcc > 2:1336547/1‑149 (MQ=255) gacTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGAttccg > 1:856426/1‑146 (MQ=255) acTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGggggtgctgc > 2:1211213/1‑143 (MQ=255) acTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGATCCTGc > 2:1103095/1‑150 (MQ=255) ttAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGAt < 1:1273171/150‑1 (MQ=255) aTCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCgg < 1:1300374/151‑1 (MQ=255) acaTCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑aa < 1:1243163/151‑1 (MQ=255) aTCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGGGGGGGGGGGGTGCTGCGGTcccggca > 1:999257/1‑144 (MQ=255) ttAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGcc < 1:671760/150‑1 (MQ=255) ttAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGTCCTGCGGTCCCGG‑AAAAACGccc > 2:1105009/1‑151 (MQ=255) tAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGATGCTGCGAACCGGC‑CAAAACGcc > 2:847057/1‑149 (MQ=255) aaaaGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGGGGGGGGGGGATCCTCCGGTCCGGC‑CAAAACGccc > 2:776305/1‑149 (MQ=255) aaaGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGATCCTGCGATCCGGC‑AAAAAAGccc > 2:226824/1‑148 (MQ=255) cAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTg < 1:77756/151‑1 (MQ=255) gTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGATTCTGCGGTCCGGC‑AAAAACGCCCGAGAAGTg > 2:2640/1‑149 (MQ=255) gAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATc < 1:556482/150‑1 (MQ=255) aaaaTGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATcgc < 1:423616/151‑1 (MQ=255) aaaaTGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGCGGCGGGAGGGGGGGGGGTACTGAGAGCCGGCGAAAAACCCCCggaagagggag > 1:728255/1‑140 (MQ=255) ggCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCgccgcc < 1:125075/150‑1 (MQ=255) ggCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCgccgcc < 1:829709/150‑1 (MQ=255) ggCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGccgccg < 1:371230/151‑1 (MQ=255) tGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGACCTGCGGTCCGGC‑AAAAAAGCCCGAGGAGGGGGTGccgccgggg > 1:239063/1‑147 (MQ=255) ccGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGGGGGGGGGGGGTCCCGCGGTTCCGC‑AAAAAAGCCCCGGGAGGGATCGCCGCCGGGGAgg > 2:1222590/1‑150 (MQ=255) gTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACa < 2:912459/151‑1 (MQ=255) ttATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGGGGGGGGGGGGTTCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGGAGGACaa > 1:364506/1‑150 (MQ=255) ttATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGGCGGGCGGAGATGCTACGGCCCGGC‑GAAAACCCCCCAGCAGCGAACGCCGCCGGGAAgg > 2:239120/1‑146 (MQ=255) ttATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGATCCCGCGATCCCGC‑GAAAAAGCCCGAGAAGGGATCGCCGCCGGGAAGGGCaa > 2:788563/1‑150 (MQ=255) ttATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGAATTGCCGAACTAAACGGCGAAGGCGAAGAGGCGGGGCGGGGGGGGATACTGCGATACGGG‑CAAAAATCCCGAGAAGGGTGCGCCGCCGCggaggaaa > 2:871886/1‑147 (MQ=255) aTCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGATCTGCGGTCCGGC‑AAAAAAGCCCGGGAAGGGGACGCCGCCGGGAAgggaaaa > 1:1098649/1‑144 (MQ=255) tGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGGGGGGGGGTGGGCCTGTGATCCGGC‑CAAAACGCCCGGGGAGGGAACGCCGCCGGGTAAGAAAAAcatg > 1:634811/1‑147 (MQ=255) tGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGGGGGGGGGGGGTCCTGCGGTCCGGC‑AAAAAAGCCCCGGAAGGGATCGCCGCCGCGAAGGAGaaaattg > 1:838543/1‑146 (MQ=255) tGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGTGATCCTGGGATCCCGG‑CAAAACGCCCGAGCAGGGATAGCCGCCCTGAAGGACAAAATg > 2:740503/1‑149 (MQ=255) gcggGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACt < 1:713202/147‑1 (MQ=255) gcgcGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACt < 1:660065/147‑1 (MQ=255) gcgcGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGTGGTTCCGCGATCCGGC‑CAAAAACCCCGCGGAGTGAACGCCGCCGTGGAGGACCAACAgg > 2:1236584/1‑149 (MQ=255) gcgATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGTATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGACCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGAACAAACTg < 2:600982/146‑1 (MQ=255) gcgATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGTCCTGCGATCCGGG‑AAAAAAGCCCGAGAAGTGATCGCCGCCGTGGAGGAAAAACTGGaaa > 1:673281/1‑150 (MQ=255) gcgAGGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAAc < 2:152441/151‑1 (MQ=255) cgATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGGGGGGGGGGGGTTCTGCGATCCCGC‑AAAAAAGACCGAGGAGAGGTAGCCGCCCGGAAGGGCAAACTTGaaaa > 2:271219/1‑149 (MQ=255) cgATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGGGGGGGGGGGGTCCTGCGGTCCGGC‑AAAAACGCCCCCGAAGGGATCGCCGCCGGGAAAGACAAACTCGaaa > 2:1161958/1‑149 (MQ=255) cgATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGaaa > 2:372391/1‑149 (MQ=255) gATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGaaa < 2:107181/148‑1 (MQ=255) gTTGCGAAGGTCCAGATTGGCCCGGAGAGGCGCCGGGTCATTGTCGAACTAACCGGCGGAGGCGAAGTGGCGGGCGGGGTGGTGCTCCTGCGATTTGGC‑AAAAACGCCCGCGAAGTCATTGCCGCCGTGAATGACAAACTGGAAACGCTg < 1:862833/150‑1 (MQ=255) gCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGaaaa < 2:773227/151‑1 (MQ=255) aaGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAagta < 2:846158/151‑1 (MQ=255) aaGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAagta < 1:365800/151‑1 (MQ=255) gTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGTCCCGCGGTCCCGC‑CAAAAAGCCCCAGAAGAGATTGCCGCCGGGGAGGGCAAACTGGAAACGCCGgaaa > 1:413191/1‑145 (MQ=255) gTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGATCCTGCGATCCGGC‑AAAAAAGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGGAACGCTGAAAAGTAGTc > 2:343882/1‑151 (MQ=255) cAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGTGAAGGCGAAGTGGCGGGCGGGGGGGGGATCCTGCGATCCCGC‑AAAAAAGCCCCAGAAGGGATCGCCGCCGTGGAGGACAAAATGGAAAAGCTGAAAAGGAGTATGc > 1:819869/1‑151 (MQ=255) cAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTg < 2:1191379/150‑1 (MQ=255) cAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGc < 2:20470/151‑1 (MQ=255) aGATTGGCCCGGAGATGCGCCGGGACATTGCCGACCTAAACGGCAAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGGTCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCt < 1:197836/148‑1 (MQ=255) gATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCg < 2:263019/151‑1 (MQ=255) ttGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGTCCTGCGATCCGGC‑CAAAAAGCCCGCGAAGGGCTCGGCGCCGGGGAGGACAAAATAGAAAAGCCGGAAAGAAGTCTggc > 1:452502/1‑146 (MQ=255) ggCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAg < 1:1165581/151‑1 (MQ=255) cccGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAAGAGTCTGCCGGAAgg > 2:822277/1‑150 (MQ=255) ggAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGt < 1:543529/150‑1 (MQ=255) ggAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCCCCGTGAAGGACAAACTGGAAAAGCTGAAAAGTAGTCTGCCGGGAGGCg > 2:1132670/1‑149 (MQ=255) gagaTGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGTCCCGCGGTCCCGC‑AAAAAAGCCCGAGAAGGGATCGCCGCCGGGGAGGACAAACTGGAAAAGCTGAAAAGGAGTCTGCCGGGAggggggg > 1:934714/1‑146 (MQ=255) gaTGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGgag < 2:1079058/151‑1 (MQ=255) gaTGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGga < 1:622883/150‑1 (MQ=255) gcgcCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGAt < 1:484110/150‑1 (MQ=255) gcgcCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGAt < 2:460656/150‑1 (MQ=255) gcgcCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATa < 1:320252/151‑1 (MQ=255) ggggCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGTCCTGCGATCCGGC‑AAAAAAGCCCGAGAAGGGATCGCCGCCGGGAAGGACAAACTGGAAACGCTGGAAAGGAGTCTGCCGGGAGGCGGGGAGATAGtt > 2:940067/1‑149 (MQ=255) ggCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTacaa < 1:174722/151‑1 (MQ=255) ggCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGATCCTGCGATCCGGC‑AAAAAAACCCCCGAAGTGATCGCCGCCGTGGAGGGCAAACCGGGAACGCTGAAAAATAGTCTGCCGGGAGGCGGGGGGATAGGTaaa > 1:543586/1‑148 (MQ=255) gCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACCAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTacaac < 2:274392/151‑1 (MQ=255) aTTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGGGGGGGGGGGATCCCGCGATCCCGG‑AAAAACCCCCGAGAAGGGATCGCCGCCGCGAAGGAGAAACTGGGAAAGCTGAAAAGCAGGCTGCCGGGAGGCGTggggggaggtaaaa > 2:258366/1‑136 (MQ=255) gCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATa < 2:6245/149‑1 (MQ=255) ccGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGATTCTGCGATCCGGC‑AAAAAAGCCCGGGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAAAGCTGAAAAGTAGTCTGCCCGGAGGCGGGGAGATAGTTACAACATACg > 2:1057436/1‑150 (MQ=255) cGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGAt < 1:1336480/151‑1 (MQ=255) aaCGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGATCCTGCGATCCGGC‑AAAAAAGCCCGAGGAGGGATCGCCGCCGTGAAGGACAAAATGGAAACGCTGAAAAGTAATCTGCCGGGAGGCGTGGGGATAGTTACAACATACGATAGcagcc > 2:382179/1‑151 (MQ=255) ggcgaaggcgaaGTGGCGGGCGGGGGGGTGGTCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGGGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGGGGGGATAGTTACAACATACGATCGcagcca > 2:143851/1‑149 (MQ=255) cgaaggcgaagTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTc < 2:766418/151‑1 (MQ=255) gaaggcgaagTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTc < 1:1154217/150‑1 (MQ=255) aaggcgaagTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCAt < 2:299155/151‑1 (MQ=255) ggcgaagTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCAtt < 2:634830/150‑1 (MQ=255) ggcgaagTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTg < 1:980536/151‑1 (MQ=255) gggcgggGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATc > 1:1214037/1‑151 (MQ=255) gtgATCATGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTc > 2:456224/1‑150 (MQ=255) | GACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCCGGC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACAACCTC > NC_000913/599434‑599727 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |