| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,001,636 | 0 | A | C | 42.0% | 131.6 / 16.4 | 81 | L52V (TTA→GTA) | fliA | RNA polymerase, sigma 28 (sigma F) factor |
| Reads supporting (aligned to +/- strand): ref base A (36/11); new base C (0/34); total (36/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.05e-13 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCCACTTCACGCGCGTTGCGTCGCACGCTGCGCGGCACCCAGTCACGGCTGCGAAGTTCATCCAGCATAGCGCCACGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACACCTTCAGCGGTATAGAGTGA > NC_000913/2001488‑2001783 | gCCACTTCACGCGCGTTGCGTCGCACGCTGCGCGGCACCCAGTCACGGCTGCGAAGTTCATCCAGCATAGCGCCACGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAAcc < 1:187045/151‑1 (MQ=255)gCCACTTCACGCGCGTTGCGTCGCACGCTGCGCGGCACCCAGTCACGGCTGCGAAGTTCATCCAGCATAGCGCCACGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAAc < 1:714927/150‑1 (MQ=255) ccACTTCACGCGCGTTGCGTCGCACGCTGCGCGGCACCCAGTCACGGCTGCGAAGTTCATCCAGCATAGCGCCACGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAAccc > 1:682375/1‑151 (MQ=255) cACTTCACGCGCGTTGCGTCGCACGCTGCGCGGCACCCAGTCACGGCTGCGAAGTTCATCCAGCATAGCGCCACGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAAccc > 2:703526/1‑150 (MQ=255) tCACGCGCGTTGCGTCGCACGCTGCGCGGCACCCAGTCACGGCTGCGAAGTTCATCCAGCATAGCGCCACGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAAt < 1:1335757/149‑1 (MQ=255) tCACGCGCGTTGCGTCGCACGCTGCGCGGCACCCAGTCACGGCTGCGAAGTTCATCCAGCATAGCGCCACGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATgc > 1:304046/1‑151 (MQ=255) cACGCGCGTTGCGTCGCACGCTGCGCGGCACCCAGTCACGGCTGCGAAGTTCATCCAGCATAGCGCCACGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATgcc < 1:684551/151‑1 (MQ=255) gcgcgTTGCGTCGCACGCTGCGCGGCACCCAGTCACGGCTGCGAAGTTCATCCAGCATAGCGCCACGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATgccgcc > 1:592545/1‑151 (MQ=255) cgTTGCGTCGCACGCTGCGCGGCACCCAGTCACGGCTGCGAAGTTCATCCAGCATAGCGCCACGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGccgcccgc > 2:1138675/1‑151 (MQ=255) cgTTGCGTCGCACGCTGCGCGGCACCCAGTCACGGCTGCGAAGTTCATCCAGCATAGCGCCACGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGccgcccgc > 2:1130778/1‑151 (MQ=255) tGCGTCGCACGCTGCGCGGCACCCAGTCACGGCTGCGAAGTTCATCCAGCATAGCGCCACGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTg > 2:1074387/1‑151 (MQ=255) cGTCGCACGCTGCGCGGCACCCAGTCACGGCTGCGAAGTTCATCCAGCATAGCGCCACGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGt > 2:350053/1‑150 (MQ=255) cGTCGCACGCTGCGCGGCACCCAGTCACGGCTGCGAAGTTCATCCAGCATAGCGCCACGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGt > 2:1111273/1‑150 (MQ=255) gTCGCACGCTGCGCGGCACCCAGTCACGGCTGCGAAGTTCATCCAGCATAGCGCCACGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGt > 2:201387/1‑149 (MQ=255) cGCTGCGCGGCACCCAGTCACGGCTGCGAAGTTCATCCAGCATAGCGCCACGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGc > 2:1113132/1‑146 (MQ=255) tGCGCGGCACCCAGTCACGGCTGCGAAGTTCATCCAGCATAGCGCCACGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTc > 1:1261133/1‑151 (MQ=255) tGCGCGGCACCCAGTCACGGCTGCGAAGTTCATCCAGCATAGCGCCACGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTc > 1:1055110/1‑151 (MQ=255) ccAGTCACGGCTGCGAAGTTCATCCAGCATCGCGCCACGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTCCCTTGTGGGGCGTCATAGCGTTCGACGGCATTAAGTACCCCATTGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACg < 2:516943/151‑1 (MQ=255) cAGTCACGGCTGCGAAGTTCATCCAGCATAGCGCCACGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGc > 1:1300123/1‑151 (MQ=255) aGTCACGGCTGCGAAGTTCATCCAGCATAGCGCCACGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCt > 1:801840/1‑151 (MQ=255) cggcggCAAATTTCACCCAGAATAGCGCCACGGATACGCTCCCCTGCGTAAGTTGAAAAGCCCGTCCTTTGTGGGCCGTCATGGCTTTCGCCGGCTTAAAGTACCCAAAGGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGc < 1:550880/145‑1 (MQ=255) cGGCTGCGAAGTTCATCCAGCATAGCGCCACGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCgg > 2:1002674/1‑151 (MQ=255) cGGCTGCGAAGTCCATCCAGCATAGCCCCACGGATCCGCTGCACTGCGTAAGTTGAAAATGCCGTTCCTTGTGGGTCGTCATAGCGTCCGACGGCATTAAGTACCCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTcgcg < 2:936546/150‑1 (MQ=255) ggCTGCGAATTTCATCCAGCATAGCGCCCCGGATACGCTGCCCTGGGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTACCCAAAGGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCggg < 2:819744/151‑1 (MQ=255) ggCTGCGAAGTTCATCCGGAATAGCGCCACGGATACGCTGCACTGCGTAAGTTGAAAATGCGGTCCCTTGTGGGGCGTCATAGCGTGCGGCGGCATAAAGTCCCCCAGTGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCgg < 2:470166/150‑1 (MQ=255) gCTGCGAAGTTCATCCAGCATAGCGCCACGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGc > 1:1013289/1‑151 (MQ=255) gCGAAGTTCATCCAGCATAGCGCCACGGATACGCTCCACTGCGTAAGTTGAAAATGCCTTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGAACCCAAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGt < 2:1049828/151‑1 (MQ=255) gAAGTTCATCCAGCATAGCGCCACGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCg > 2:963144/1‑151 (MQ=255) tCATCCGGCATAGCCCCAGGGATCCGCTGCACGGCTTAGGTTGTAAATCCCTTTCCTTGTAGGGCGCCATAGCTTTCGCCGGCATTAAGTACCCCAGGGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAAcc < 1:485933/150‑1 (MQ=255) aTCCAGCATAGCGCCACGGATACGCTGCACTGCGTAAGTTGAAAATGCCGTTCCTTGTAGGGCGTCATAGCTTCCGCCGGCATTAAGTACCCAAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCt < 2:162856/149‑1 (MQ=255) ccAGCATGGCGCCACGGACCCGCTGCCCTGCGTAATTTGAAAAGCCCGTCCCTTGTAGGCCACCTTGGCGTGCCCCGGCATTAAGTAACCCACGCCCCCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCa < 1:325254/150‑1 (MQ=255) ccAGCATAGCGCCACGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGc > 2:789043/1‑149 (MQ=255) ccAGCAAAGCGCCCGGGATCCCCTGCACTGCGTAATTTTAAAATCCCTTTCTTTGTGGGGCGTCATAGCGTCCGCCGGCATAAAGTACCCCAATCCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCa < 1:226459/150‑1 (MQ=255) aGCATAGCGCCACGGATCCGCTGCACTGCGTAATTTTTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAgg < 2:59757/150‑1 (MQ=255) aGCGCCACGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAAt > 2:267975/1‑151 (MQ=255) aGCGCCACGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAAt > 2:720226/1‑151 (MQ=255) ccccccGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGCCGGCATAAAGTAACCAAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGc < 2:499486/146‑1 (MQ=255) gcCACGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCt > 2:275450/1‑151 (MQ=255) ccACGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATAAATTACCCAAATCCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCtt < 2:853928/151‑1 (MQ=255) cGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGc > 1:935697/1‑150 (MQ=255) gCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCa > 2:797140/1‑150 (MQ=255) gCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCAAACCTGCAGGCGCAATGCTTCGTGACGCAc > 2:748623/1‑151 (MQ=255) tGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCAcc > 2:746867/1‑150 (MQ=255) cccTGCGTAAGTTGAAAACGCCGTTCCTTGGGGGGCGTCATAGCGTCCGCCGGCATTAAGAACCCCAATCCCCCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGAc < 2:1121067/141‑1 (MQ=255) gCGTAATTTGAAAATGCCGTCCCTTGTAGGGCGTCATAGCGTCCGACGGCATAAAGTACCCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCg < 2:253823/148‑1 (MQ=255) gCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCggg > 1:1006068/1‑150 (MQ=255) gCGTAAGTTGAAAAGGCCGTTCCTGGTGGGGCGTCATAGCGTTCGACGGCATTAAGAACCCCAAGGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGa < 1:253435/151‑1 (MQ=255) aaGTTGTAAATGCCTTCCTTTGGAGGGCTTCTTGGGGTCCGACGGAATTAAGAACCCCATGGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACa < 1:1130719/149‑1 (MQ=255) aaGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATAAAGTACCCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGa < 2:1174655/147‑1 (MQ=255) aaGTTGAAAATGCCGTTCTTTGTGGGGCGTCATAGCGTTCGACGGCATAAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACa < 2:363906/149‑1 (MQ=255) aaGTTGAAAATGCCGTTCCTTGTGGGGCGTCATAGCGTCCGACGGCATTAAGTACCCCAAGGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACa < 1:924184/149‑1 (MQ=255) gTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAAc > 1:200069/1‑151 (MQ=255) ttGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTACCCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAAc < 2:87629/150‑1 (MQ=255) tGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCcac > 1:384589/1‑151 (MQ=255) ccttcctttGTGGGGCATCATAGCTTTCGACGGCATAAAGTACCCAAACCCCCCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCcaca < 2:385003/143‑1 (MQ=255) ccGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCcac > 1:497586/1‑149 (MQ=255) ccGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCcac > 2:1167597/1‑149 (MQ=255) ttCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTACCCCAAGCCCCCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCAACAGCg < 2:1233674/150‑1 (MQ=255) ttCCTGGTAGGGCGTCATGGCGTTCGCCGGCATTAAGTAACCAAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCg < 1:1313066/150‑1 (MQ=255) tcccTTGTAGGGCGTCATGGCGTTCGACGGCATTAAGTACCCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGc < 2:1233929/147‑1 (MQ=255) ccTTGTAGGGCTTCATAGGGTCCGACGGCATTAAATACCCCAAGGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAgt < 1:1002621/151‑1 (MQ=255) ttGTGGGGCGTCATGGCGTTCGACGGCATTAATAACCCCAAGGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAg < 1:393535/148‑1 (MQ=255) ttGTAGGGCGTCATCGCGTTCGACGGCATAAAGTACCCCAATCCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAgtg < 2:766619/150‑1 (MQ=255) ttGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAgtgt > 2:259112/1‑151 (MQ=255) ttGGAGGGCGTCATGGCGTCCGCCGGCATTAATTACCCAAATCCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAgt < 1:757824/149‑1 (MQ=255) tGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGtt > 1:1120583/1‑151 (MQ=255) gtggggCGTCATAGCGTTCGACGCCATTAAGAACCCCAAGGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGtt < 1:1247760/147‑1 (MQ=255) ggggggCGTCATGGCGTTCGACGGCATAAAGTAACCCAAGGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGttt < 2:389363/148‑1 (MQ=255) ggCGTCATAGCGTTCGACGGAATTAAGTACCCAAAGCCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATcc < 2:614252/151‑1 (MQ=255) aTAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTac > 1:391780/1‑150 (MQ=255) aTAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTac > 1:124450/1‑150 (MQ=255) gCGTTCGCGGGCATAACGCACCCCACTCCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACACCt < 1:411750/151‑1 (MQ=255) ttCGACGGCATAAACTACCCAAAGCCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACACCtt < 1:1184083/149‑1 (MQ=255) tgcggcGGAATAAAGTACCCCAAGCCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACACCTTc < 1:367983/145‑1 (MQ=255) tcggacgaaaTTAAGAAACCCAATCCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCa < 2:312568/131‑1 (MQ=255) gACGGCATTAAGTACCCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCGCGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACACCTTCAGCg < 2:730389/151‑1 (MQ=255) aCGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACACCTTCAGCgg > 2:176450/1‑151 (MQ=255) aCGGCATAAAGTACCCAAATCCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACACCTTCAGCg < 2:615583/150‑1 (MQ=255) ttAAGTACCCAAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACACCTTCAGCGGTATag < 2:888035/150‑1 (MQ=255) aaaaaaCCCAATCCCCCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACACCTTCAGCGGTATaga < 1:295488/145‑1 (MQ=255) aGTACCCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACACCTTCAGCGGTATAGAGTg < 1:249631/151‑1 (MQ=255) gTACCCCAAACCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACACCTTCAGCGGTATAGAGTGa < 1:1060063/151‑1 (MQ=255) | GCCACTTCACGCGCGTTGCGTCGCACGCTGCGCGGCACCCAGTCACGGCTGCGAAGTTCATCCAGCATAGCGCCACGGATACGCTGCACTGCGTAAGTTGTAAATGCCGTTCCTTGTAGGGCGTCATAGCGTTCGACGGCATTAAGTAACCCAATGCCGCCCGCCTGTAGCAGATCGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACACCTTCAGCGGTATAGAGTGA > NC_000913/2001488‑2001783 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |