Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,483,2540GA47.3% 46.6 / 35.1 58S29L (TCA→TTA) emrKmultidrug resistance efflux pump membrane fusion protein
Reads supporting (aligned to +/- strand):  ref base G (17/12);  new base A (0/26);  total (18/40)
Fisher's exact test for biased strand distribution p-value = 8.06e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTT  >  NC_000913/2483105‑2483400
                                                                                                                                                     |                                                                                                                                                   
cTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTg                                                                                                                                                     <  2:474851/150‑1 (MQ=255)
      gAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAACGc                                                                                                                                              <  1:112322/151‑1 (MQ=255)
      gAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAACGc                                                                                                                                              >  1:996903/1‑151 (MQ=255)
       aaCGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCa                                                                                                                                             <  1:850730/151‑1 (MQ=255)
        aCGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCaa                                                                                                                                            <  2:946953/151‑1 (MQ=255)
          gTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCaata                                                                                                                                          <  1:368270/151‑1 (MQ=255)
             gTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCaat                                                                                                                                           >  2:250897/1‑147 (MQ=255)
                       ttATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCAATAAATAAAACTa                                                                                                                               <  1:757717/148‑1 (MQ=255)
                        tATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCAATAAATAAAACTACCg                                                                                                                            <  1:999430/150‑1 (MQ=255)
                          tGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCAATAAATAAAACTACCGcc                                                                                                                          >  1:1193091/1‑150 (MQ=255)
                           gATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCa                                                                                                                         <  1:996648/150‑1 (MQ=255)
                             ttAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGGCCAATAGGCATAGGCACCTCAAAACGCAATAAATAAAACTACCGCCAAt                                                                                                                       >  2:677525/1‑150 (MQ=255)
                                      gTGACACTACCTGAGACTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACAAATAGGCATAGGCACCTGAAAACGCAATAAAAAAAACTACCGCCAATAAAGAAAAGt                                                                                                             <  2:925093/151‑1 (MQ=255)
                                               ccTGAGTTTTGTGCAGAATTTGACTCTGCTTTCCCGTTAAAATAGTCGTCATCTGTACGAATCTTTTCTTCAAATTCCATGGCCAAATAGGCATAGCCCCCTAAAAACGAAAAAAAAAAAACTACCGCCAATAAAGAAAAGTATTttcttc                                                                                                    <  2:526867/151‑1 (MQ=255)
                                               ccTGAGATTTGTGCAAAAATTGGATCTACATCCCCCGAGAAATAGGCGTCATCTGTACTAATCATCTTTTCAAATCCCATTCACCAATAGACATAGCCACCTAAAAACGCAAAAAAAAAACCTACCGCCAATAAAGAAAAGTATTttctt                                                                                                     <  1:545578/150‑1 (MQ=255)
                                                  gagaCTTGTGAAAAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCTTGTCTTCTAATTCCATTGACCAATAGGAAAAGGCACCTAAAAACGAAAAAAATAAACCTACCGCCAATAAAGAAAAGTATTTtcttct                                                                                                   <  2:51894/149‑1 (MQ=255)
                                                       ttgtaaaaaaaTTGATTCTGCTTTCCCCGTAACATAGGCTTCTTCTTTTAAAAACATGTTTTATAATTCCATGACCCAAAAGGAAAAGACCCCTAAAACCCAAAAAAAAAAATCTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAg                                                                                              <  1:661957/141‑1 (MQ=255)
                                                       ttGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGa                                                                                             >  2:713632/1‑150 (MQ=255)
                                                       ttGTGCAAAAATTGGTTCTCCTTTCCCCGTGAAATGGGCGTCATCTGTACAAATCATGTCTTCTAATCCCATTGCCAAAGAGGCATAGGCCCCTAAAACCGAAATAAAAAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAg                                                                                              <  2:114593/149‑1 (MQ=255)
                                                       ttGTGCAAAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATTTGTACTAATCATTTCTTATAATCCCATTCACCAATAGACATAGGCCCCTAAAACCGCAAAAAAAAACACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGa                                                                                             <  1:953523/150‑1 (MQ=255)
                                                        tgtgCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAAt                                                                                           >  2:133799/1‑151 (MQ=255)
                                                          tgCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGt                                                                                         >  2:1109616/1‑151 (MQ=255)
                                                             aaaatttGTATCTGTATTCCCCGTAACATAGGCGTCATTTGTACAAATAATGTTTTATAATTCCATTGACCAATAGGAAAAGGCACTTAAAAACGAAAAAAAAAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGaa                                                                                            <  1:77652/140‑1 (MQ=255)
                                                             aaaatttGGATCTCCATTCCCCGTGACATAGGCTTCATTTGTATTAATCTTTTTTTCTAATCCAATTAACCAAAAGGCATGGCCCCCTAAAACCGAAAAAAAAAAACCTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGtttt                                                                                      <  1:906928/146‑1 (MQ=255)
                                                             aaaaatgctaTCCGCATCCCACGGGACGTGGGCTTCATCTGTTCTAACCATTTTTTCTAATCCCTTTCCACAATAGAAAAAGCACCCTAAAACCGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGttt                                                                                       <  1:758214/141‑1 (MQ=255)
                                                             aGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATCCCATTGACAAATAGGCATAGGCACCTAAAAACGAAATAAAAAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGt                                                                                         <  2:435303/148‑1 (MQ=255)
                                                               aaaTTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGtttttt                                                                                    >  1:1008314/1‑151 (MQ=255)
                                                                  ttGGATCTGCTTCCCCCGTGACATAGGCGTCATCTGTACTAATCATTTTTTCTAATTCCATTGCCAAATAGGCATAGCCACCTAAAACCGAAAAAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTAt                                                                                  <  2:4016/150‑1 (MQ=255)
                                                                    ggATCAGAATCCCCCGTACAAAAGGCGTCTTCTGTACAAATCATTTCTTATAATCCCATGGCCAAATAGAAAAAGCCACCAAAAAGCGAAAAAAAAAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTa                                                                                   <  1:370457/147‑1 (MQ=255)
                                                                      aTCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGa                                                                              >  1:115025/1‑150 (MQ=255)
                                                                             tcccgcGTGACTTGGGCTTCATCTTTACTAATCTTTTCTTCTAATTCTATACCCAAATGGAGATGGGCACTTGAAAACGCAAAAAAGAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTa                                                                          <  2:1160886/142‑1 (MQ=255)
                                                                             tcccccGTGACATAGGCGTCATCTGTACTAATAATTTCTTAAAATTCCATTGACCAATAGGCATAGCCACCTAAAACCGAAATAAAAAAAATTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATc                                                                       <  1:82657/148‑1 (MQ=255)
                                                                             tcccccGTGACATAGCCGTCATCTGTACAAAACATGTTTTCTAATCCGATTGACAAAGAGGCAGTGGCGCCAGAAAGCGCAATAAATAAACCTCCCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAAt                                                                            <  2:404694/143‑1 (MQ=255)
                                                                             tcccccGAGAAATAGGCGCCATTTTTAATATTCATGTTTTTTAATTCAATTGACCAATAGTAAAAGCCACATAAAATCGAAATAAAAAAAATTTCCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAAtt                                                                           <  1:617456/144‑1 (MQ=255)
                                                                               ccccGTGACATAGGCGTCATCTTTACTAATCATTTCTTCTAATTCCATTGACCAATAGGCATAGGCCCCGAAAAACGAAATAAAAAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCt                                                                      <  2:918814/149‑1 (MQ=255)
                                                                               ccaggggACATAGGCTCCATCTGCACAAATTATGTTTATTAATCCCATTGTCCAAGAGGAATAGGCACGTCAAACCGCAATAAATAAACCTGCCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCt                                                                      <  2:983085/143‑1 (MQ=255)
                                                                                   gTGACAAAGGCGTCATCTGTACTAATCATGTCTTCTAATTCAATAGACAAAAAGGAATAGGCACCTAAAAACGAAATAAAAAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTcc                                                                 <  1:686059/150‑1 (MQ=255)
                                                                                      aCATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACt                                                              >  2:944349/1‑150 (MQ=255)
                                                                                        agaGGCGTTATCTATTCAAATCATGTCTTCTAATCCCATGGACAAATGGACAGAGGCCCAAAAAACCGAAAAAAAAAAACCTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACtat                                                            <  2:913900/148‑1 (MQ=255)
                                                                                        aTAGGCTTCATTTTTACAAACCATTTCTTCAAATTCCATTGACCAATAGGCATAGGCCCCTGAAACCGAAAAAAAAAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACtatt                                                           <  1:86735/151‑1 (MQ=255)
                                                                                           ggCGTCTTCTGTACTAATAATTTCTTTAAATTCCATTGACCAATAGACAAAGGCACCTAAAAACGCAAAAAAAAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACt                                                              <  1:233688/145‑1 (MQ=255)
                                                                                               tattgtatACAAATAATGTCTTATATTACCATCAACAAAAAGAAAAAGGCACATAAAAACTAAATAAAAAAAATTTCCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACtattat                                                         <  1:152914/139‑1 (MQ=255)
                                                                                                    tGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTtc                                               >  1:681291/1‑151 (MQ=255)
                                                                                                    tGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTtc                                               >  1:1115849/1‑151 (MQ=255)
                                                                                                    tGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTtc                                               >  1:749300/1‑151 (MQ=255)
                                                                                                     taccTAAACATGTCTTCTATTTCCTTTAACAAATAGGCATAAACACCGAAAATCGAAAAAAATAATACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCAt                                                  <  1:596366/144‑1 (MQ=255)
                                                                                                     gTACTAATAATTTTTTCAAATTCCATTGACAAATAGGAATAGGCACCTAAAAACCAAAAAAAAAAACCTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCAttt                                                <  2:558887/149‑1 (MQ=255)
                                                                                                       aCTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTtctc                                             >  1:1121328/1‑150 (MQ=255)
                                                                                                             cATGTTTTCTAATCCCATTAACCAATAGGCATAGGCCCCTAAAAACAAAAAAAAAAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGa                                        <  2:892192/149‑1 (MQ=255)
                                                                                                             cATGTCTACTAATCCCATTGACCAATAGGCATAGGCACCAGAAAACTAAATAAATAAACCTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGa                                        <  1:1123966/149‑1 (MQ=255)
                                                                                                               tGTCTTATAATCCCATTCACCAATAGACAAAGGCACTTAAAACCGAAAAAAAAAAAATTTCCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATg                                      <  1:172546/149‑1 (MQ=255)
                                                                                                                   ttctAATTCCATGGCCAAATAGTAAAAGGCACCTAAAACCACAAAAAATAAAACTTCCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGa                                     <  2:235007/146‑1 (MQ=255)
                                                                                                                               tGACCAATAGGCATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTAtgaattgaat                     >  1:168361/1‑150 (MQ=255)
                                                                                                                                gACCAATAGGCATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATtgaatg                    >  2:231167/1‑150 (MQ=255)
                                                                                                                                       aggcataggcaCCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGc            >  1:508062/1‑151 (MQ=255)
                                                                                                                                        ggcataggcaCCAAAAAACGAAATAAAAAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGca           <  1:946394/151‑1 (MQ=255)
                                                                                                                                             agccaCCTAAAACCGAAAAAAAAAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGca           <  1:274400/143‑1 (MQ=255)
                                                                                                                                                caCCTAAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCAttct   <  1:517139/151‑1 (MQ=255)
                                                                                                                                                  ccTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCAttctt  >  2:609116/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                   
CTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGGATCTGCATTCCCCGTGACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAACGCAATAAATAAAACTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTT  >  NC_000913/2483105‑2483400

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: