Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	569,541	Δ1 bp	coding (640/1527 nt)	ybcK →	DLP12 prophage; putative recombinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	569,541	0	G	.	100.0%	433.7 / NA	90	coding (640/1527 nt)	ybcK	DLP12 prophage; putative recombinase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base . (35/55);  total (35/55)

AGGTACGATTATGACGGCGTCTTGTCCGAGATGGCTCTCCTTAGATGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATAGCCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTATTTGCGTACCTTCATATCGTGCAAGAGGGAAAGGGATA  >  NC_000913/569399‑569684                                                                                                                                               |                                                                                                                                                aGGTACGATTATGACGGCGTCTTGTCCGAGATGGCTCTCCTTAGATGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTAtt                                                                                                                                        >  1:346802/1‑151 (MQ=255)   gTACGATTATGACGGCGTCTTGTCCGAGATGGCTCTCCTTAGATGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTAttt                                                                                                                                       >  1:494357/1‑150 (MQ=255)   gTACGATTATGACGGCGTCTTGTCCGAGATGGCTCTCCTTAGATGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGCGTGTGATCTATTCAGCTAATTTTTAAACGCAGGATGGAAAGGCGCTCATTGCATGCAATA‑CCAAGTAtct                                                                                                                                       <  1:795333/150‑3 (MQ=255)      cGATTATGACGGCGTCTTGTCCGAGATGGCTCTCCTTAGATGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAAt                                                                                                                                   >  2:714424/1‑151 (MQ=255)        aTTATGACGGCGTCTTGTCCGAGATGGCTCTCCTTAGATGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGa                                                                                                                                 <  2:902916/151‑1 (MQ=255)        aTTATGACGGCGTCTTGTCCGAGATGGCTCTCCTTAGATGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGa                                                                                                                                 <  2:137645/151‑1 (MQ=255)          tATGACGGCGTCTTGTCCGAGATGGCTCTCCTTAGATGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGAt                                                                                                                                <  1:373535/150‑1 (MQ=255)          tATGACGGCGTCTTGTCCGAGATGGCTCTCCTTAGATGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGAt                                                                                                                                <  1:4358/150‑1 (MQ=255)          tATGACGGCGTCCTGTCCGAGATGGCTCTCCTTAGATGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATc                                                                                                                               >  2:883799/1‑151 (MQ=255)           aTGACGGCGTCTTGTCCGAGATGGCTCTCCTTAGATGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCa                                                                                                                              <  2:155509/151‑1 (MQ=255)             gACGGCGTCTTGTCCGAGATGGCTCTCCTTAGATGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCAt                                                                                                                             <  1:82448/150‑1 (MQ=255)               cGGCGTCTTGTCCGAGATGGCTCTCCTTAGATGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCt                                                                                                                          <  1:63851/151‑1 (MQ=255)                ggCGTCTTGTCCGAGATGGCTCTCCTTAGATGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCt                                                                                                                          <  1:763887/150‑1 (MQ=255)                        gTCCGAGATGGCTCTCCTTAGATGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGaa                                                                                                                  <  1:1194271/150‑1 (MQ=255)                        gTCCGAGATGGCTCTCCTTAGATGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAAt                                                                                                                 <  2:531084/151‑1 (MQ=255)                         tCCGAGATGGCTCTCCTTAGATGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAAtt                                                                                                                >  2:800183/1‑151 (MQ=255)                          ccGAGATGGCTCTCCTTAGATGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAAtt                                                                                                                <  1:423851/150‑1 (MQ=255)                          ccGAGATGGCTCTCCTTAGATGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAAtt                                                                                                                <  2:916270/150‑1 (MQ=255)                             agaTGGCTCTCCTTAGATGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTtctc                                                                                                            >  2:380282/1‑151 (MQ=255)                             agaTGGCTCTCCTTAGATGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTtc                                                                                                              <  1:802754/149‑1 (MQ=255)                              gaTGGCTCTCCTTAGATGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTtctc                                                                                                            <  1:692241/150‑1 (MQ=255)                              gaTGGCTCTCCTTAGATGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCa                                                                                                           <  1:525465/151‑1 (MQ=255)                               aTGGCTCTCCTTAGATGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAg                                                                                                          <  2:519785/151‑1 (MQ=255)                                 ggCTCTCCTTAGATGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAgg                                                                                                         <  2:778141/150‑1 (MQ=255)                                   ctctCCTTAGATGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGaa                                                                                                       >  1:634875/1‑150 (MQ=255)                                        cTTAGATGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGaaaa                                                                                                     <  1:670721/147‑1 (MQ=255)                                           aGATGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGt                                                                                               <  2:262855/150‑1 (MQ=255)                                           aGATGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTg                                                                                              <  1:214946/151‑1 (MQ=255)                                             aTGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCa                                                                                            <  1:1124721/151‑1 (MQ=255)                                               gACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATg                                                                                          >  2:154320/1‑151 (MQ=255)                                               gACAAAAGAACGGATTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAACGAAAGTGCAt                                                                                           <  1:568192/150‑1 (MQ=255)                                                aCAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATgg                                                                                         <  2:1170080/151‑1 (MQ=255)                                                 cAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATggg                                                                                        <  1:277792/151‑1 (MQ=255)                                                  aaaaGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATgggg                                                                                       <  2:940948/151‑1 (MQ=255)                                                      gAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCt                                                                                   >  2:213144/1‑151 (MQ=255)                                                      gAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCt                                                                                   <  2:831148/151‑1 (MQ=255)                                                      gAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCt                                                                                   <  1:1174090/151‑1 (MQ=255)                                                       aaCGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCtt                                                                                  <  1:459299/151‑1 (MQ=255)                                                          ggCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTg                                                                               <  2:831748/151‑1 (MQ=255)                                                           gCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGt                                                                              <  2:648610/151‑1 (MQ=255)                                                             ttttGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTa                                                                             >  1:162667/1‑150 (MQ=255)                                                             ttttGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTa                                                                             >  1:286800/1‑150 (MQ=255)                                                             ttttGTTCCAGACCCCGACAGGGTGAAAAATATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGATGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGTCCTTCTGTa                                                                             >  1:230610/1‑150 (MQ=255)                                                                tGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAAt                                                                           <  1:856359/149‑1 (MQ=255)                                                                 gTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTg                                                                         <  1:624935/150‑1 (MQ=255)                                                                 gTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTg                                                                         <  2:1191904/150‑1 (MQ=255)                                                                    ccAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGaaaa                                                                     <  1:451816/151‑1 (MQ=255)                                                                      aGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CAAAGAATTTAAATGATCATGCTGTAAAGAATTTCTTAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAat                                                                   >  2:898640/1‑151 (MQ=255)                                                                        aCCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAatta                                                                 <  1:1058192/151‑1 (MQ=255)                                                                          cccGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAattatt                                                               >  2:686980/1‑151 (MQ=255)                                                                           ccGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAAttatta                                                              <  2:569292/151‑1 (MQ=255)                                                                           ccGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAAttatta                                                              <  2:333439/151‑1 (MQ=255)                                                                               cAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGa                                                          <  1:930446/151‑1 (MQ=255)                                                                                   gTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATa                                                       >  2:82645/1‑150 (MQ=255)                                                                                     gAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑ACAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATaa                                                      >  2:830967/1‑149 (MQ=255)                                                                                       aaaCTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGct                                                  >  1:176888/1‑151 (MQ=255)                                                                                           tATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTg                                               >  1:306903/1‑150 (MQ=255)                                                                                            aTTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTg                                               <  1:544290/149‑1 (MQ=255)                                                                                               gAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAgg                                          >  2:47362/1‑151 (MQ=255)                                                                                                  cTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTAt                                       >  1:144706/1‑151 (MQ=255)                                                                                                   tAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTAtt                                      >  2:356451/1‑151 (MQ=255)                                                                                                   tAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTAtt                                      >  2:393753/1‑151 (MQ=255)                                                                                                    aaTTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGGATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTAt                                       <  2:1175821/149‑1 (MQ=255)                                                                                                    aaTTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTAttt                                     >  2:401551/1‑151 (MQ=255)                                                                                                    aaTTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTAttt                                     <  1:968897/151‑1 (MQ=255)                                                                                                    aaTTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTAttt                                     <  2:1122631/151‑1 (MQ=255)                                                                                                     aTTTTTAAACTCGGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTATTTg                                    >  1:1139886/1‑151 (MQ=255)                                                                                                      tttttAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTATTTGc                                   >  1:899043/1‑151 (MQ=255)                                                                                                         ttAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTATTTGCGt                                 <  2:126600/150‑1 (MQ=255)                                                                                                         ttAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTATTTGCGt                                 >  1:1152777/1‑150 (MQ=255)                                                                                                          tAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTATTTGCGTa                                <  2:362961/150‑1 (MQ=255)                                                                                                            aaCTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTATTTGCGTACCt                             <  1:1168518/151‑1 (MQ=255)                                                                                                            aaCTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTATTTGCGTACCt                             <  2:906142/151‑1 (MQ=255)                                                                                                             aCTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTATTTGCGTACCtt                            >  1:405544/1‑151 (MQ=255)                                                                                                              cTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTATTTGCGTACCTTc                           >  1:1038264/1‑151 (MQ=255)                                                                                                              cTCAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTATTTGCGTACCTTc                           >  2:166988/1‑151 (MQ=255)                                                                                                                cAGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTATTTGCGTACCTTCat                         <  1:854731/151‑1 (MQ=255)                                                                                                                 aGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTATTTGCGTACCTTCata                        <  1:60195/151‑1 (MQ=255)                                                                                                                 aGGATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTATTTGCGTACCTTCat                         >  2:966882/1‑150 (MQ=255)                                                                                                                   gATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTATTTGCGTACCTTCATATc                      >  2:1167171/1‑151 (MQ=255)                                                                                                                   gATGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTATTTGCGTACCTTCATATc                      <  1:180981/151‑1 (MQ=255)                                                                                                                    aTGGAAAGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTATTTGCGTACCTTCATATCg                     >  2:531003/1‑151 (MQ=255)                                                                                                                         aaGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTATTTGCGTACCTTCATATCGTGCaa                <  2:79819/151‑1 (MQ=255)                                                                                                                          aGGCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTATTTGCGTACCTTCATATCGTGCa                 >  1:933420/1‑149 (MQ=255)                                                                                                                           ggCGCTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTATTTGCGTACCTTCATATCGTGCAaga              <  2:1078518/151‑1 (MQ=255)                                                                                                                              gcTCATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTATTTGCGTACCTTCATATCGTGCAAGAggg           >  1:1162608/1‑151 (MQ=255)                                                                                                                                 cATTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTATTTGCGTACCTTCATATCGTGCAAGAGGGaaa        <  1:585621/151‑1 (MQ=255)                                                                                                                                  aTTGAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTATTTGCGTACCTTCATATCGTGCAAGAGGGaa         >  2:531968/1‑149 (MQ=255)                                                                                                                                     gAATGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTATTTGCGTACCTTCATATCGTGCAAGAGGGAAAGGGa    <  1:973070/151‑1 (MQ=255)                                                                                                                                       aTGCAATA‑CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTATTTGCGTACCTTCATATCGTGCAAGAGGGAAAGGGATa  <  2:42063/151‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                AGGTACGATTATGACGGCGTCTTGTCCGAGATGGCTCTCCTTAGATGACAAAAGAACGGCTTTTGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATAGCCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTATTAGCGAATAAAGCTCTGATAGGTATTTGCGTACCTTCATATCGTGCAAGAGGGAAAGGGATA  >  NC_000913/569399‑569684

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑