Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,584,367	C→T	intergenic (+58/‑392)	yrhA → / → yrhB	pseudogene, interrupted by IS1E/stable heat shock chaperone

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,584,367	0	C	T	100.0%	362.4 / NA	98	intergenic (+58/‑392)	yrhA/yrhB	pseudogene, interrupted by IS1E/stable heat shock chaperone
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (45/53);  total (45/53)

AGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTT  >  NC_000913/3584225‑3584513                                                                                                                                               |                                                                                                                                                   agaTAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAAtt                                                                                                                                            >  2:85710/1‑151 (MQ=255)  gaTAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTc                                                                                                                                           >  1:729443/1‑151 (MQ=255)  gaTAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTc                                                                                                                                           <  2:1212068/151‑1 (MQ=255)  gaTAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTc                                                                                                                                           <  1:1084070/151‑1 (MQ=255)     aataTTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCtt                                                                                                                                        >  2:1098231/1‑151 (MQ=255)        atTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGtt                                                                                                                                     <  1:105228/151‑1 (MQ=255)        atTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGt                                                                                                                                      <  2:705977/150‑1 (MQ=255)           ggCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCg                                                                                                                                   <  1:845775/150‑1 (MQ=255)           ggCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGa                                                                                                                                  <  2:814659/151‑1 (MQ=255)                aGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAAttt                                                                                                                             >  1:394132/1‑151 (MQ=255)                aGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAAttt                                                                                                                             <  2:280476/151‑1 (MQ=255)                 gAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTa                                                                                                                            <  1:244328/151‑1 (MQ=255)                  aaaaTATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAAttt                                                                                                                             >  2:149730/1‑149 (MQ=255)                  aaaaTATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAAttt                                                                                                                             >  1:336343/1‑149 (MQ=255)                  aaaaTATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAAttt                                                                                                                             >  2:278299/1‑149 (MQ=255)                  aaaaTATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAAttt                                                                                                                             >  2:437204/1‑149 (MQ=255)                    aaTATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGGAAATTAGCa                                                                                                                         <  1:1013171/151‑1 (MQ=255)                     atatatTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGc                                                                                                                          >  2:384184/1‑149 (MQ=255)                     atatatTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGc                                                                                                                          >  2:668382/1‑149 (MQ=255)                         atTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGc                                                                                                                     <  2:339717/150‑1 (MQ=255)                           tCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCaa                                                                                                                   <  1:916036/150‑1 (MQ=255)                            cAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGc                                                                                                                 >  2:1191605/1‑151 (MQ=255)                                 cGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATgg                                                                                                            <  2:888080/151‑1 (MQ=255)                                  gTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATgg                                                                                                            >  1:927119/1‑150 (MQ=255)                                   tttAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATg                                                                                                             <  2:762350/148‑1 (MQ=255)                                   tttAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGa                                                                                                           >  1:429804/1‑150 (MQ=255)                                    ttAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAGCCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGaa                                                                                                          <  1:611878/150‑1 (MQ=255)                                     tAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGaaa                                                                                                         <  2:1098313/150‑1 (MQ=255)                                      aGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGaaaaa                                                                                                       <  1:752962/151‑1 (MQ=255)                                      aGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGaaaa                                                                                                        >  1:470161/1‑150 (MQ=255)                                      aGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGaaaa                                                                                                        <  2:1045862/150‑1 (MQ=255)                                          aTTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACtt                                                                                                    <  1:122595/150‑1 (MQ=255)                                          aTTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACtt                                                                                                    >  1:580072/1‑150 (MQ=255)                                          aTTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTa                                                                                                   <  1:278292/151‑1 (MQ=255)                                            ttCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTAc                                                                                                  >  2:1184584/1‑150 (MQ=255)                                             tctcTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACa                                                                                                 >  1:534013/1‑150 (MQ=255)                                                ctTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACaa                                                                                                <  1:507852/148‑1 (MQ=255)                                                ctTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACaa                                                                                                <  1:85705/148‑1 (MQ=255)                                                  tCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACg                                                                                              <  2:1011009/148‑1 (MQ=255)                                                  tCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACg                                                                                              <  2:228285/148‑1 (MQ=255)                                                    aTTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACt                                                                                         <  1:1074796/151‑1 (MQ=255)                                                        ttAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTacac                                                                                     >  2:237844/1‑151 (MQ=255)                                                          aaaCGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACt                                                                                    <  2:18779/150‑1 (MQ=255)                                                          aaaCGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTc                                                                                   >  1:1008521/1‑151 (MQ=255)                                                             cGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCtt                                                                                >  2:450345/1‑151 (MQ=255)                                                              gAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTa                                                                               <  2:903005/151‑1 (MQ=255)                                                                aaTCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTa                                                                               >  2:563269/1‑149 (MQ=255)                                                                  tCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTg                                                                           >  2:503599/1‑151 (MQ=255)                                                                   cATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTg                                                                           >  1:554107/1‑150 (MQ=255)                                                                    aTGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTg                                                                           >  1:447085/1‑149 (MQ=255)                                                                       gACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAGCGGAACTACGCTCCTTAAGTGAGATg                                                                      <  1:769035/151‑1 (MQ=255)                                                                           gttgttCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGAcc                                                                  <  1:313354/151‑1 (MQ=255)                                                                           gttgttCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGAcc                                                                  >  2:1123556/1‑151 (MQ=255)                                                                                  ataataATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACa                                                           <  1:1060273/151‑1 (MQ=255)                                                                                  ataataATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACa                                                           <  2:1174456/151‑1 (MQ=255)                                                                                    aataatCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATg                                                         >  1:1146511/1‑151 (MQ=255)                                                                                      taatCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGt                                                        >  1:722894/1‑150 (MQ=255)                                                                                       aatCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTa                                                       <  1:384171/150‑1 (MQ=255)                                                                                       aatCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAg                                                      <  2:1163385/151‑1 (MQ=255)                                                                                         tCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGtc                                                    >  2:886375/1‑151 (MQ=255)                                                                                          cAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGtct                                                   >  1:1028292/1‑151 (MQ=255)                                                                                           aaaaGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGtctc                                                  >  1:485116/1‑151 (MQ=255)                                                                                             aaGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTctct                                                 >  1:1093356/1‑150 (MQ=255)                                                                                              aGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTAt                                               <  2:419655/151‑1 (MQ=255)                                                                                               ggAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTAtt                                              >  1:413012/1‑151 (MQ=255)                                                                                                gAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTAttt                                             <  1:1031382/151‑1 (MQ=255)                                                                                                gAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTAttt                                             <  1:776966/151‑1 (MQ=255)                                                                                                 aaaCAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTAtttt                                            <  1:428987/151‑1 (MQ=255)                                                                                                  aaCAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTAtttt                                            >  1:1160746/1‑150 (MQ=255)                                                                                                  aaCAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTa                                           <  1:952628/151‑1 (MQ=255)                                                                                                    cAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGc                                         >  1:1204668/1‑151 (MQ=255)                                                                                                     aaaaaTCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGcc                                        >  1:877147/1‑151 (MQ=255)                                                                                                     aaaaaTCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGcc                                        <  1:108116/151‑1 (MQ=255)                                                                                                      aaaaTCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCg                                       >  1:1002066/1‑151 (MQ=255)                                                                                                      aaaaTCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCg                                       <  1:359398/151‑1 (MQ=255)                                                                                                       aaaTCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCg                                       >  1:923460/1‑150 (MQ=255)                                                                                                       aaaTCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCg                                       >  2:545727/1‑150 (MQ=255)                                                                                                        aaTCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGaa                                     <  1:1182222/151‑1 (MQ=255)                                                                                                         aTCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGaaa                                    <  1:511143/151‑1 (MQ=255)                                                                                                         aTCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGaa                                     >  2:500509/1‑150 (MQ=255)                                                                                                           cATTGTAAACCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATa                                  <  2:389604/151‑1 (MQ=255)                                                                                                                 aaaCCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAAt                            <  2:1047634/151‑1 (MQ=255)                                                                                                                 aaaCCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAAt                            >  2:22898/1‑151 (MQ=255)                                                                                                                  aaCCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATg                           >  2:841046/1‑151 (MQ=255)                                                                                                                   aCCATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATgg                          <  1:497745/151‑1 (MQ=255)                                                                                                                    ccATGCCATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGc                         >  1:1171850/1‑151 (MQ=255)                                                                                                                         ccATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTatg                     >  2:222572/1‑150 (MQ=255)                                                                                                                          cATCTTTTTAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTatgat                   <  2:1207399/151‑1 (MQ=255)                                                                                                                               ttttAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTAtgatga                 <  1:540841/148‑1 (MQ=255)                                                                                                                               ttttAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGAtt               <  1:1053215/150‑1 (MQ=255)                                                                                                                                tttAGAGATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGAttt              <  2:38303/150‑1 (MQ=255)                                                                                                                                tttAGAGATTACCAGTAGAAAATTCCTTGGTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGAttt              <  2:676963/150‑1 (MQ=255)                                                                                                                                   agagATTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAAt          >  2:843450/1‑151 (MQ=255)                                                                                                                                    gagaTTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATg         <  1:975919/151‑1 (MQ=255)                                                                                                                                    gagaTTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATg         <  1:124040/151‑1 (MQ=255)                                                                                                                                      gaTTACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGa        <  1:235630/150‑1 (MQ=255)                                                                                                                                        ttACCAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACAt     >  2:369133/1‑151 (MQ=255)                                                                                                                                           ccAGTAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGtt  <  2:121359/151‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                   AGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTT  >  NC_000913/3584225‑3584513

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑