| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,682,157 | (C)7→8 | coding (589/3282 nt) | yphG ← | DUF4380 domain‑containing TPR repeat protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,682,150 | 1 | . | C | 90.2% | 177.8 / 11.3 | 51 | coding (596/3282 nt) | yphG | DUF4380 domain‑containing TPR repeat protein |
| Reads supporting (aligned to +/- strand): ref base . (3/2); new base C (24/22); total (27/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGGCACATTTTTATAGCGAGAAATGTCCACTCCAGCGGAGTAGTCCACTTTGTAGTAAGTGCCGGTAGCGATGGGGAAA‑GCGGAGACGGCCCGTTT‑GCCG‑TGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTT‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAACCTGTCATCACCTGTAAACCATGCATC > NC_000913/2682002‑2682290 | aGGCACATTTTTATAGCGAGAAATGTCCACTCCAGCGGAGTAGTCCACTTTGTAGTAAGTGCCGGTAGCGATGGGGAAA‑GCGGAGACGGCCCGTTT‑GCCG‑TGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTT‑cc > 1:383940/1‑151 (MQ=255) ataTTTTTATAGAGAAAAATGCCCCCCCCGGGGGAGTAGCCCTTTTTGTAGAAAGGGCGGGTAGGGGGGGGGAAA‑GGGGGGGCGGCCCTTTT‑GCCT‑TGACCAACCCCCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTT‑cccccc < 1:807247/149‑1 (MQ=255) acaTTTTTATAGCGAGAAATGTCCACTCCAGCGGAGTAGTCCACTTTGTAGTAAGTGCCGGTAGCGATGGGGAAA‑GCGGAGACGGCCCGTTT‑GCCG‑TGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTT‑cccccc > 2:498271/1‑151 (MQ=255) tttttATAGCGAGAAATGTCCACTCCAGCGGAGTAGTCCACTTTGTAGTAAGTGCCGGTAGCGATGGGGAAA‑GCGGCGACGGCCCGTTT‑GCCG‑TGATCAAACACCGCCGTTACATCCGGCGGGACGACGCCCTGATG‑CCCTT‑cccccccc > 2:802187/1‑149 (MQ=255) tataGCGAGAAATGTCCACTCCAGCGGAGTAGTCCACTTTGTAGTAAGTGCCGGTAGCGATGGGGAAA‑GCGGAGACGGCCCGTTT‑GCCG‑TGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTT‑CCCCCCCcttac > 2:134260/1‑148 (MQ=255) ataGCGAGAAATGTCCACTCCAGCGGAGTAGTCCACTTTGTAGTAAGTGCCGGTAGCGATGGGGAAA‑GCGGAGACGGCCCGTTT‑GCCG‑TGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCAc > 2:708072/1‑151 (MQ=255) ataGCGAAAAATGTCCACCCCAGGGGAGTAGCCCATTTTGTAGAAAGGGCCGGTAGCGAGGGGAAAA‑GGGGAGACGCCCCGTTT‑GCCG‑TGATAAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCa < 2:300872/150‑1 (MQ=255) gCGAAAAACGCCCCCTCCAGGGGAGAGGCCCTTTTTGTAGTAAGTGCGGGTCGCGGGGGGGAGC‑GGGGTGA‑GCGCCGTTT‑TCCGTTAATCAAACCCCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGc < 1:401948/151‑1 (MQ=255) agaAATGCCCCCTCCGGGGGAGTAGTCCTTTTTGTAGTAAGTGCCGGTAGCGAGGGGGAAA‑GCGGAGACGGCCCTTTT‑GCCG‑TAATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACt < 2:862054/146‑1 (MQ=255) aaaTGCCCCCCCGAGGGGAGTAGCCCTCTTTGTAGTATGGGCGGGTAGGGAGGGGAAAG‑GGGGGGCCGGCCTGTTT‑GCGG‑TAATCAACCCCCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGt < 1:864683/151‑1 (MQ=255) aaaTGCCCCCCCCAGGGGATTAGTCCTTTTTGTAGTAAGTGCCGGTAGCGAGGGGAAAG‑GCGGAGACGCCCTGTTT‑CCCG‑TGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGcc < 2:1175457/147‑1 (MQ=255) tGTCCACTCAGGCGGAGTATCCCATTTTGTATTAGGGGCGGTTGGGGAGGGGAAAG‑GGGGAGCCGGCCGTTTT‑CCCG‑TAATAAACCCCCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTg < 2:1147227/150‑1 (MQ=255) ccACTCCAGCGGAGTAGTCCACTTTGTAGTAAGTGCCGGTAGCGATGGGGAAA‑GCGGAGACGGCCCGTTT‑GCCG‑TGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGccc > 2:952978/1‑151 (MQ=255) ccccAGGGGAGTAGTCCACTTTGTAGAAAGTGCGGGAGGCGAGGGGGAAG‑GCGGAGAGGGCCCGTTT‑GCCG‑TGATCAAACCCCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCccac < 1:707947/148‑1 (MQ=255) tCCAGCGGAGTAGTCCACTTTGTAGTAAGTGCCGGTAGCGATGGGGAAA‑GCGGAGACGGCCCGTTT‑GCCG‑TGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCccacc > 1:658281/1‑150 (MQ=255) tCCAGCGGAGTAGTCCACTTTGTAGTAAGTGCCGGTAGCGATGGGGAAA‑GCGGAGACGGCCCGTTT‑GCCG‑TGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCccacc > 2:237811/1‑150 (MQ=255) ccAGCGGAGTAGTCCACTTTGTAGTAAGTGCCGGTAGCGATGGGGAAA‑GCGGAGACGGCCCGTTT‑GCCG‑TGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCcaccac > 2:658946/1‑151 (MQ=255) cGGAGTAGTCCACTTTGTAGTAAGTGCCGGTAGCGATGGGGAAA‑GCGGAGACGGCCCGTTT‑GCCG‑TGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACcaca > 1:60523/1‑148 (MQ=255) gtagtCCACTTTGTAGTAAGTGCCGGTAGCGATGGGGAAA‑GCGGAGACGGCCCGTTT‑GCCG‑TGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATg > 2:519361/1‑151 (MQ=255) tCCACTTTGTAGTAAGTGCCGGTAGCGATGGGGAAA‑GCGGAGACGGCCCGTTT‑GCCG‑TGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGAcgc > 2:492561/1‑151 (MQ=255) cctttttGTAGTAAGCGCCGGTGGGGGGGGGGAAA‑GCGGGGCCGCCCGGTTT‑GCCG‑TGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATg < 1:498391/142‑1 (MQ=255) aCTTTGTAGTAAGTGCCGGTAGCGATGGGGAAA‑GCGGAGACGGCCCGTTT‑GCCG‑TGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACgcggc > 1:582675/1‑151 (MQ=255) ttttttgagagggCCGGTAGGGAGGGGAAAA‑GGGGGGGCGGCCCTTTT‑GGCG‑TAATCAAACCCCGCCCTTACAACCGGGGGGAAGGCGGTCTGATGCCCCTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACgcgg < 2:1160938/136‑1 (MQ=255) tttGTATTAAGTCCCGGTAGCGAGGGGAAAA‑GCGGGGCCGCCCCGTTG‑CCCG‑TGATAAACCTCCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACgcggc < 2:976423/149‑1 (MQ=255) ttGTAGTAAGTGCCGGTAGCGATGGGGAAA‑GCGGAGACGGCCCGTTT‑GCCG‑TGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCggcgtg > 2:113753/1‑151 (MQ=255) gtagtaAGTGCCGGTAGCGATGGGGAAA‑GCGGAGACGGCCCGTTT‑GCCG‑TGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCggcgtgg > 1:228827/1‑150 (MQ=255) aggTGCCGTTAGCGGTGGGAAAG‑GGGGAGAC‑GCCCGTTTGGCCG‑TAATCAACCACCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCggcgtgg < 2:1150282/143‑1 (MQ=255) tGCCGGTAGCGATGGGGAAA‑GCGGAGACGGCCCGTTT‑GCCG‑TGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGt > 2:417208/1‑151 (MQ=255) taacaatggaaaaa‑GGGAAGGCGGCCCGTTT‑GCGG‑TGCTAAAACTCCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTta < 2:104898/136‑1 (MQ=255) cGATGGGGAAA‑GCGGAGACGGCCCGTTT‑GCCG‑TGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCCTC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGa > 2:182895/1‑148 (MQ=255) cGATGGGGAAA‑GCGGAGACGGCCCGTTT‑GCCG‑TGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGAcgc > 1:1138565/1‑151 (MQ=255) gATGGGGAAA‑GCGGAGACGGCCCGTTT‑GCCG‑TGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGAcgcg > 1:1119334/1‑151 (MQ=255) ggggggAAAGGCGGAGCCGCCCCTTTT‑CCCG‑TAAACAAACCCCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGAcg < 1:194351/147‑1 (MQ=255) tGGGGAAA‑GCGGAGACGGCCCGTTT‑GCCG‑TGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGc > 2:1193113/1‑151 (MQ=255) aaa‑GGGGAGCCGCCCTTTTT‑GCCG‑TGAACAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCg < 2:241067/151‑1 (MQ=255) agaCGGCCCGTTT‑GCCG‑TGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTcc > 2:756567/1‑150 (MQ=255) ggCCCGTTT‑GCCG‑TGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAgcgc > 1:448152/1‑151 (MQ=255) ccG‑TAATAAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCg < 1:1230999/147‑1 (MQ=255) acccccgccgTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAgg < 2:1027610/147‑1 (MQ=255) aaCACCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGCTATAGACGCGGCTGGCGATTTCCAGCGCCCCCCGGTCAGGGCCCAgg > 2:329525/1‑151 (MQ=255) aaCACCCCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCCACGCCCGGTCAGGgcgc > 1:67936/1‑148 (MQ=255) cacCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTT‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTg < 1:26540/151‑1 (MQ=255) acCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATCGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAggggg > 2:376994/1‑149 (MQ=255) acCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTg > 1:920303/1‑151 (MQ=255) ccgccgTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTg > 2:198710/1‑150 (MQ=255) cgccgTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTT‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGaa > 1:751508/1‑150 (MQ=255) ccgTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAAc < 1:702805/151‑1 (MQ=255) aCATCCGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAACCTGt < 2:884317/150‑1 (MQ=255) ccGGCGGGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAACCTGtcatca < 2:307731/151‑1 (MQ=255) cggcggGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAACCTGTCATCAc < 1:844503/151‑1 (MQ=255) ggcggGAAGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAACCTGTCATCAcc > 1:1068229/1‑151 (MQ=255) aGACGCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAACCTGTCATCACCTGTAAAc < 1:879924/151‑1 (MQ=255) gCTCTGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAACCTGTCATCACCTGTAAACCATg < 1:952925/151‑1 (MQ=255) tctGATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAACCTGTCATCACCTGTAAACCATGc > 1:997085/1‑150 (MQ=255) gATG‑CCCTTCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAACCTGTCATCACCTGTAAACCATGCATc < 1:405906/150‑1 (MQ=255) | AGGCACATTTTTATAGCGAGAAATGTCCACTCCAGCGGAGTAGTCCACTTTGTAGTAAGTGCCGGTAGCGATGGGGAAA‑GCGGAGACGGCCCGTTT‑GCCG‑TGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATG‑CCCTT‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAACCTGTCATCACCTGTAAACCATGCATC > NC_000913/2682002‑2682290 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |