| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 2,859,224 | (GGCGTG)2→3 | coding (2132/2562 nt) | mutS → | methyl‑directed mismatch repair protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2859212 | 1 (0.010) | 59 (0.770) +GGCGTG |
53/262 | 0.5 | 98.3% | coding (2120/2562 nt) | mutS | methyl‑directed mismatch repair protein |
| ? | NC_000913 | 2859213 = | 1 (0.010) | coding (2121/2562 nt) | mutS | methyl‑directed mismatch repair protein | |||||
TAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTT‑ATGGTGGAGATGACTGAAACCGCCAATATTTTACATAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTGGCGTGGGCGTGCGCGGAAAATCTGGCGAATAAGATTAAGGCATTGACGTTATTTGCTACCCACTATTTCGAGCTGACCCAGTTACCGGAGAAAATGGAAGGCGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACC > NC_000913/2859062‑2859357 | tAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTT‑ATGGTGGAGATGACTGAAACCGCCAATATTTTACATAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCt > 2:908066/1‑151 (MQ=255) aGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTT‑ATGGTGGAGATGACTGAAACCGCCAATATTTTACATAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTg > 2:56574‑M1/1‑150 (MQ=255) gcgGCAGATGACCTGGCGTCCGGGCGCTCAACCTTT‑ATGGTGGAGATGACTGAAACCGCCAATATTTTACATAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcg > 1:121963‑M1/1‑146 (MQ=255) gcgGAAGATGCCCTGGCGTCGGGCCGC‑CAACCTTTAAGGGGGGAGAAAAATGAACCCGCCAATATTTTACATAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggc < 1:638226/149‑1 (MQ=255) cGTCCGGGCGCTCAACCTTT‑ATGGTGGAGATGACTGAAACCGCCAATATTTTACATAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgc > 2:82298‑M1/1‑130 (MQ=255) gggCGCTCACCTTTT‑ATGGGGGAAATGACAAAAACCGCCAATATTTTACATAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcgg < 2:692814‑M1/148‑24 (MQ=255) gcccctcacCTTTT‑AGGGGGGAGATGACTAAAACCGCCAATATTTTACATAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaa < 1:687780‑M1/147‑28 (MQ=255) cgcTCAACCTTT‑ATGGTGGAGATGACTGAAACCGCCAATATTTTACATAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatc > 2:662326‑M1/1‑122 (MQ=255) cacacccttt‑ggGGGGGAAATGACTAAAACCGCCAATATTTTACATAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatct < 2:1061652‑M1/145‑31 (MQ=255) cacccttt‑AGGGTGGGGAACATAGAAACCGCCAATATTTTACATAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctg < 2:122696‑M1/146‑32 (MQ=255) cAACCTTT‑ATGGTGGAGATGACTGAAACCGCCAATATTTTACATAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggc > 1:1094686‑M1/1‑118 (MQ=255) atctttt‑atggTGGAGATGATTGAACCCGCCAATATTTTACATAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaat < 2:686678‑M1/141‑29 (MQ=255) aaCCTTT‑ATGGTGGAGATGACTGAAACCGCCAATATTTTACATAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcg > 1:1016601‑M1/1‑117 (MQ=255) tttgggggggagataacaAAAACCGCCAATATTTTACATAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaat < 1:1202918‑M1/142‑38 (MQ=255) t‑ATGGTGGAGATGACTGAAACCGCCAATATTTTACATAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaata > 2:646876‑M1/1‑111 (MQ=255) gggtgattcggaaatccgccaatattttgcatAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaa < 2:1082722‑M1/136‑46 (MQ=255) tGAATCCGCCAATATTTTACATAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattg < 2:746227‑M1/148‑53 (MQ=255) aaCCGCCAATATTTTACATAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgtt > 1:166923‑M1/1‑93 (MQ=255) aaCCGCCAATATTTTACATAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgtt > 1:760811‑M1/1‑93 (MQ=255) cGCCAATATTTTACATAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttattt < 2:253193‑M1/151‑62 (MQ=255) cGCCAATATTTTACATAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttattt < 2:850400‑M1/151‑62 (MQ=255) aaTATTTTACATAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgcta < 1:937972‑M1/151‑66 (MQ=255) ttttACATAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctaccc > 2:1250700‑M1/1‑82 (MQ=255) ttccataACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCCCCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccac < 2:73619‑M1/147‑71 (MQ=255) ttACATAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccact > 1:993763‑M1/1‑80 (MQ=255) ttACATAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccac < 1:837787‑M1/150‑71 (MQ=255) tACATAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccact > 2:229993‑M1/1‑79 (MQ=255) tACATAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccact > 2:1078805‑M1/1‑79 (MQ=255) aCATAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactat > 2:448393‑M1/1‑78 (MQ=255) aTAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactattt < 1:1015202‑M1/151‑76 (MQ=255) tAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttc > 1:757993‑M1/1‑75 (MQ=255) aaCGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcg < 1:601643‑M1/151‑78 (MQ=255) gCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagc < 2:414077‑M1/151‑81 (MQ=255) ccACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagct > 1:1249074‑M1/1‑70 (MQ=255) cGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgacc < 2:115531‑M1/151‑86 (MQ=255) aaTACAGTCTGGTGTTAATGGATGAGATCGGGCGGGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggtgttggcgggcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgaccc > 1:1261543‑M1/1‑64 (MQ=255) tACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgacccagt > 2:335550‑M1/1‑62 (MQ=255) aCAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgacccagtt > 1:7587‑M1/1‑61 (MQ=255) cAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgacccagtt > 2:608904‑M1/1‑60 (MQ=255) tCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgacccagttaccg > 1:356984‑M1/1‑57 (MQ=255) ggTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgacccagttaccggag < 1:539679‑M1/151‑98 (MQ=255) tgtTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgacccagttaccggaga > 1:1034539‑M1/1‑52 (MQ=255) tAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgacccagttaccggagaaaat > 1:635188‑M1/1‑49 (MQ=255) aTGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgacccagttaccggagaaaatgg < 1:703371‑M1/151‑105 (MQ=255) ggATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgacccagttaccggagaaaatgga < 2:775777‑M1/150‑106 (MQ=255) gATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgacccagttaccggagaaaatgga > 2:16495‑M1/1‑44 (MQ=255) aTGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgacccagttaccggagaaaatggaagg > 2:962048‑M1/1‑43 (MQ=255) gagaTCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgacccagttaccggagaaaatggaaggc < 1:100639‑M1/150‑110 (MQ=255) gagaTCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgacccagttaccggagaaaatggaaggc < 1:750086‑M1/150‑110 (MQ=255) gaTCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgacccagttaccggagaaaatggaaggcgtc < 1:168543‑M1/151‑113 (MQ=255) gaTCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgacccagttaccggagaaaatggaaggcgtc < 2:40251‑M1/151‑113 (MQ=255) aTCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgacccagttaccggagaaaatggaaggcgtcg > 1:496206‑M1/1‑38 (MQ=255) cGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgacccagttaccggagaaaatggaaggcgtcgct > 2:434805‑M1/1‑36 (MQ=255) gTGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgacccagttaccggagaaaatggaaggcgtcgctaacgt < 1:44451‑M1/151‑121 (MQ=255) tGGAACGTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgacccagttaccggagaaaatggaaggcgtcgctaacgtg > 1:1023540‑M1/1‑30 (MQ=255) gTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgacccagttaccggagaaaatggaaggcgtcgctaacgtgcatctc > 1:226934‑M1/1‑24 (MQ=255) gTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgacccagttaccggagaaaatggaaggcgtcgctaacgtgcatctc > 2:13506‑M1/1‑24 (MQ=255) gTCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgacccagttaccggagaaaatggaaggcgtcgctaacgtgcatctc < 2:911474‑M1/151‑128 (MQ=255) tCCACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgacccagttaccggagaaaatggaaggcgtcgctaacgtgcatctcg > 1:900125‑M1/1‑23 (MQ=255) cACCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgacccagttaccggagaaaatggaaggcgtcgctaacgtgcatctcgat > 2:608421‑M1/1‑21 (MQ=255) aCCTACGATGGTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaatacgattaaggcattgacgttatttgctacccactatttcgagctgacccagttaccggagaaaatggaaggcgtcgctaacgtgcatctcgatg > 1:1078578‑M1/1‑20 (MQ=255) gTCTGTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgacccagttaccggagaaaatggaaggcgtcgctaacgtgcatctcgatgcactggagc > 2:413143‑M1/1‑10 (MQ=255) gTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgacccagttaccggagaaaatggaaggcgtcgctaacgtgcatctcgatgcactggagcacggc > 1:511765‑M1/1‑6 (MQ=255) gTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgacccagttaccggagaaaatggaaggcgtcgctaacgtgcatctcgatgcactggagcacggc < 2:1153926‑M1/151‑146 (MQ=255) gTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgacccagttaccggagaaaatggaaggcgtcgctaacgtgcatctcgatgcactggagcac < 2:59223‑M1/148‑143 (MQ=255) gTCGCTggcgtgggcgtgggcgtgcgcggaaaatctggcgaataagattaaggcattgacgttatttgctacccactatttcgagctgacccagttaccggagaaaatggaaggcgtcgctaacgtgcatctcgatgcactggagcac < 2:149957‑M1/148‑143 (MQ=255) | TAGGCGCGGCAGATGACCTGGCGTCCGGGCGCTCAACCTTT‑ATGGTGGAGATGACTGAAACCGCCAATATTTTACATAACGCCACCGAATACAGTCTGGTGTTAATGGATGAGATCGGGCGTGGAACGTCCACCTACGATGGTCTGTCGCTGGCGTGGGCGTGCGCGGAAAATCTGGCGAATAAGATTAAGGCATTGACGTTATTTGCTACCCACTATTTCGAGCTGACCCAGTTACCGGAGAAAATGGAAGGCGTCGCTAACGTGCATCTCGATGCACTGGAGCACGGCGACACC > NC_000913/2859062‑2859357 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |