| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,001,918 | 0 | A | C | 43.6% | 76.5 / 12.3 | 56 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| Reads supporting (aligned to +/- strand): ref base A (25/6); new base C (0/24); total (25/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.42e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGC‑AGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCA > NC_000913/2001772‑2002067 | ggTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGC‑AGAAAAAAG‑cccc < 1:1144854/151‑1 (MQ=255) ataGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCATTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGC‑AGAAAAAAA‑CCccgcc > 2:507737/1‑151 (MQ=255) agagTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGC‑AGAAAAAAA‑CCccgcc < 1:377301/149‑1 (MQ=255) agagTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGC‑AGAAAAAAA‑CCCCGCCgg > 1:235165/1‑151 (MQ=255) tGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGC‑AGAAAAAAA‑CCCCGCCGGTgg > 1:255994/1‑150 (MQ=255) ttCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGC‑AGAAAAAAA‑CCCCGCCGGTGGCgggg > 1:767005/1‑151 (MQ=255) caagaaaaaCAGCCCTGCGTTATATGAGTTATGGAAATGTTTATCCTTTTCGGGGGGTTTTTT‑AATCGAACGATTGGGGGGTAAAAGGAGGGTTTTTTTGGGGT‑TTAAAGGAAAATTCCAGAA‑AAAAAAAAC‑CCCCGCCGGTGGCGGGGaa < 2:1250183/145‑1 (MQ=255) aaCAGCCTTGCGTTATATAATTTATCGCCATAATTATCCGTTTCTG‑AGGGTTTTTAAACCGGACAATTGGTGGTTAAAAGGAGGTTTTATTGGGGGT‑TTACAGGTAATTCCCAGGC‑AAAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGtt < 2:1032983/151‑1 (MQ=255) cAGCCGGGCTTTATAGGATTAATCGGAATGATTACCCGTTTCTCGAGGGTTTTA‑AACCGGACGATAAGGGGGAAAAAGGAGGGGTTTTTGGGGGG‑TTGCGGGTAATTCCCAGCC‑AAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTg < 1:145065/150‑1 (MQ=255) cAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGC‑AGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGc > 1:504960/1‑151 (MQ=255) aGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGC‑AGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCt > 2:174503/1‑151 (MQ=255) atatGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGC‑AGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTgcg > 1:1048524/1‑151 (MQ=255) aGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGC‑AGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCttt > 2:797590/1‑150 (MQ=255) ttaccggagtGATTATCGTTTTCTGCAGGTTTTTT‑AATGGGATGTTTGGGGGGTAAAATGGGGGGTTTTTGGGGGT‑TTACGGGAAAATCCAAGGC‑AAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTAt < 2:538792/141‑1 (MQ=255) accGGAATGATTATCCGTTTCTGCGGTTTTTTA‑AATCGAACGATTGGGGGGTAAAAGGGGGGTTTATTGGGGGT‑TAACAGGAAAATCCCAGGC‑AAAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGATTTATg < 2:332539/147‑1 (MQ=255) ggCATTTTTTTCCTTTTCTGCGGGTTTTTT‑AATGGGACGATTGGGGGGTAAAAGGGGGGTTTTTTTGGGGG‑TAACAGGAAAATCCAAGGA‑AAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTg < 1:1085306/149‑1 (MQ=255) gaattaTTATCCTTTTCTGCAGGTTTTTA‑AATCGGAGAATTAGTGGGTAAAAGGGGGGTTTTTTTGGGGG‑TTACAGAAAAATCCAAGGA‑AAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCg < 1:1234714/146‑1 (MQ=255) aTGATTATCCTTTTCGGCAGGTTTTTT‑AAGCGGACGATTAGTGGGGAAAATGAGGGTTTATTGGGGGG‑TTACAGGAAAATCCCAGGA‑AAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGa < 2:1222839/151‑1 (MQ=255) tGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGACATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGC‑AGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGAt > 2:1005476/1‑151 (MQ=255) tCCGTTTCTGCAGGTTTTTT‑AATCGGACGATTGGGGGGTGAAATGGGGGGTTTTTTGGGGG‑TTACAGGTAAATCCCAGGA‑AAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgcgg < 1:349589/149‑1 (MQ=255) gCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGC‑AGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGATGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCt > 1:1207339/1‑151 (MQ=255) cAGGTTTTTA‑AATCGGACGTTTAGTGGGTAAAATG‑GGGGTTTTTTGGGGGTTTACAGGTAAATTCCAGGA‑AGAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACg < 2:352990/147‑1 (MQ=255) cAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGC‑AGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCtt > 1:702773/1‑151 (MQ=255) aGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGC‑AGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCtt > 2:805627/1‑150 (MQ=255) ttttt‑AATGGGAGGTTTAGTGGGGAAATTGGGGGTTTTTTTGGGGT‑TTACAGTTAATCCCCTGGC‑AAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATcc < 2:780876/150‑1 (MQ=255) tttta‑AATGGGATGATGGGTGGGTGAAAGGAGGGTTTTTTGGGGGT‑TTACAGGAAAATTCAGGGC‑AAAAAAACC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATcc < 2:982087/150‑1 (MQ=255) aatggaaCGATTGGTGGTTGAAAGGGGGGTTTTTTTGGGGT‑TTACAGTTAAATCCCAGGA‑AAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGcc < 1:671564/143‑1 (MQ=25) gaaCGTTTAGGGGGTGAAATGGGGGGTTATTTGGGGG‑TTAGAGAT‑AATTCCAGGCAAAAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACa < 1:368750/147‑1 (MQ=37) aCGATTGGTGGGTAAAAGGAGGGTTTTTTTGGGGG‑TGAAAGGAAAATCCCAGAA‑AAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACaaaa < 1:980995/150‑1 (MQ=25) tttgTGGGTAAAAGGGGGGTTTATTTGGGGG‑TTACAGGTAACTCCCAGGC‑AAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAtgt < 2:1086440/147‑1 (MQ=37) ttAGGGGGTAAAAGGGGGGTTTATTGGGGGT‑TTACAGGTAATTCCCAGGC‑AAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAt < 2:621663/148‑1 (MQ=37) tgaGTGGGGGAAGGGGGGGGTTTTTGGGGAG‑TTAAAGTTAAATTCCGGAA‑AGAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAtgt < 2:1094014/148‑1 (MQ=25) gTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGC‑AGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCa > 1:152504/1‑150 (MQ=255) gggTAAAATGGGGGTTTTTTTGGGGG‑TTAAGGAAAAATCCCAGGA‑AAAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCaaa < 2:149143/150‑1 (MQ=25) gTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGC‑AGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAAtt > 1:1244537/1‑150 (MQ=255) gAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGC‑AGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCa > 1:767100/1‑150 (MQ=255) acaTGAGGGGTTATTTGGGGG‑TTACAGGTAAATCCCAGGC‑AGAAAAAAA‑CCGCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGGTGCGGCGTAAACGCCTTATCCGGCCTCCAAAAATGTGCAAATTCaa > 1:432899/3‑150 (MQ=255) aaagaaGGGTTTATTTGGGGG‑TGAGAGGAAAATTCAGGGA‑AAAAAAGAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTc < 2:802570/143‑1 (MQ=25) gggTTTTTTGGGGGTTTAGAGAAAACTCCCAGGC‑AAAAAAACC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAAt < 2:775801/149‑1 (MQ=25) ttttttGGGGG‑TAACAGGAAATTCCCAGGA‑AAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCaa < 1:965123/147‑1 (MQ=25) tATTTGGGGG‑TTACAGGTAAATTCCAGGC‑AGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAAtt > 2:136910/1‑151 (MQ=255) ttGGGGG‑TTACAGGTAAATTCCAGGC‑AGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCa > 2:150575/1‑150 (MQ=255) tGGGGG‑TTACAGGTAAATTCCAGGC‑AGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAAc > 1:496562/1‑151 (MQ=255) gg‑TTACAGTAAAATCCCAGGA‑AAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGt < 1:174500/151‑1 (MQ=37) gg‑TTACAGGTAAATTCCAGGC‑AGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGGACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGGGCAAATTCAATAAATTGCAATTCAACTTg > 1:414134/1‑150 (MQ=255) ggtttacagaaaaTTCCCGGG‑AAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTg < 2:634811/141‑1 (MQ=25) ttaaaagaaaaaTCCCAGGA‑AAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGGGAAAATTCAATAAAGGGCAATTCAACTGGt < 1:1071619/141‑1 (MQ=25) tACAGGTAAATTCCAGGC‑AGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAACTTGCAATTCAACTTGTAgg > 2:897177/1‑151 (MQ=255) tACAGGTAAATTCCAGGC‑AGAAAAAAA‑CCCAGCCGGTGGCGGGGAAGCACGTTGCTGCCAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTgaa > 1:1160192/1‑147 (MQ=255) acgggTAATTTCCAGGA‑AGAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTa < 1:1110131/145‑1 (MQ=255) cAGGTAAATTCCAGGC‑AGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGcc > 2:621152/1‑151 (MQ=255) aattcccAGGC‑AAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGa < 1:344643/144‑1 (MQ=255) aaaTCCCGGGC‑AAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGa < 1:417341/149‑1 (MQ=255) aaaTCCCAGGC‑AAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGAt < 1:797555/150‑1 (MQ=255) ttCCAGGC‑AGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagc > 1:1161624/1‑151 (MQ=255) ccggcaaaaaaaaac‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcg < 1:289699/142‑1 (MQ=255) ggaaaaaaaaac‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagc < 2:142971/141‑1 (MQ=255) aGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcgc > 1:478676/1‑150 (MQ=255) aaaaaac‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCAt < 2:1048585/150‑1 (MQ=255) aaaaa‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATc > 2:929105/1‑149 (MQ=255) aaac‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAgg < 2:557452/151‑1 (MQ=255) aaaa‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAgg > 1:192962/1‑151 (MQ=255) a‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCa > 2:217109/1‑150 (MQ=255) | GGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGC‑AGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCA > NC_000913/2001772‑2002067 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |