| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,423,297 | 0 | G | C | 42.5% | 120.5 / 53.3 | 80 | intergenic (+103/+126) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| Reads supporting (aligned to +/- strand): ref base G (5/41); new base C (34/0); total (39/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.31e-17 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGC > NC_000913/3423150‑3423447 | aaaTCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCgg < 2:1190548/149‑1 (MQ=255) gAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTCCCCCCCCCCCCCCCGGCCGGTGCTTCGC‑aa > 2:336906/1‑150 (MQ=37) gAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCCGCCCCCCACCCCCCCGGCCGGTGCTTCGC‑aa > 2:1149705/1‑150 (MQ=255) gAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCCGCCCGCCCCCCCCCCGGCCGGTGCCTCGC‑aa > 1:699431/1‑150 (MQ=255) ttttATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGTCCTGCCCCCCACCCCCCCGGCCGGTGCTTCCC‑AAAG‑TTC‑aa > 2:355181/1‑149 (MQ=255) ttttATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑a < 2:803520/148‑1 (MQ=255) ttATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGGCCCCCCCGCCCCCCCCCCGGCCCGTGCGTCCC‑AACG‑TTC‑taa > 1:466347/1‑148 (MQ=255) tATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATcc < 1:340077/150‑1 (MQ=255) aTCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCg < 2:963512/150‑1 (MQ=255) aTCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTTCCCGCCCCCCCCCCGGGCGGTGCTTTCC‑AACG‑GTC‑CAAACCGc > 2:54426/1‑151 (MQ=255) cGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGGCCCGCCCCCCCCCCCCCCGGCCGGTGGTTTGC‑AACG‑GTT‑AAAtaccgcc > 1:62042/1‑145 (MQ=255) gCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGGCCCGCCCCCCCCCCCCCCGGCCGCTGCTTCGC‑AACG‑GTC‑AAAtacccccc > 1:213208/1‑144 (MQ=255) gCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTGCCCCCCCCCCCCCCGGCCGTTGCTTCGC‑AACC‑TTC‑AAAACCGcccc > 2:958671/1‑151 (MQ=21) gCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTGCCCCCCACCCCCCCGGCCGTTGTCTTGC‑AACG‑TTT‑AAAACCCCTc > 2:1172145/1‑150 (MQ=21) tAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGTGGGCCCGCCCGCCCCCCTCCCGGCCGGTGCCTCGT‑TAAC‑TTC‑AAAttcaccccccgc > 2:667396/1‑139 (MQ=255) tAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCcggc < 1:182718/150‑1 (MQ=255) tAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCCCCCCCCCGGCCGGTGTTTTTC‑CACG‑CTC‑AAAATCGCccccc > 2:352529/1‑147 (MQ=21) aaTCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCcggcgg < 2:1125651/151‑1 (MQ=255) aTCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTCCCCCCCCCCCCCCCGGCCCCTGCTTTTC‑CACC‑TTC‑CAATcccccccc > 1:761545/1‑145 (MQ=21) tCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGTCTGCCCCCCCCCCCCCCGGCCGGTTCTTCGC‑AACC‑TTC‑AAAACCGCTCCccgcgg > 2:453591/1‑149 (MQ=21) cATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTGCCCGCCCCCCCCCCGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCCGCGGGttt > 2:135194/1‑151 (MQ=18) ttAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTGCTGCCCCCCCCCCCCCCGGCCGCTGCTTCGC‑CACG‑TTC‑AAAACCGCTCCCCGCGGGttt > 1:310514/1‑149 (MQ=18) aaTTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTcc < 2:817606/151‑1 (MQ=255) tGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCCCCCCCCCCCCCCCCCGGCCGGTGCTTTGC‑CACG‑TTC‑AAATCACCCCCccgcggggtttttc > 1:819321/1‑140 (MQ=255) aaTGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACt < 1:130494/150‑1 (MQ=255) aTGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCCGGCCCGTGCTTCCC‑ACCG‑CTC‑TAAACCGCTCCCCGCGGACTTGTCCCACTc > 2:109509/1‑150 (MQ=17) tGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGGCCCGCCCCCCCCCCCCCCGGCCGGTTCTTCTC‑CAAC‑TTC‑AAATCCCCCCCCCGCGGGGTTTTTCTACTc > 1:171777/1‑149 (MQ=255) tAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCCTCCCCCCCCCCCCCCCGCCGGTGCTTTTCAAACG‑TTA‑AAAACCCCCCCCGCGGGGTTTTTCCtctccgggg > 1:95226/1‑143 (MQ=12) aGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGga‑ga < 2:986976/151‑1 (MQ=255) gAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCCCCCCCCCGGCCGGTGCTTTTC‑AACGTTTC‑AAACCCCCCCCCGCCGG‑TTTTTCCTCCTCggggg > 1:1203511/1‑143 (MQ=17) aaaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGTGTCCTGCCCGCCCCCCCCCGGGCCGTTGCTTCGC‑CAAG‑CTC‑CAATCCGCCCCCCGCGGGGTTGTTCTACTCCGGG‑GCGGGTTTAcc > 2:884447/1‑146 (MQ=255) aaaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGacaa < 1:1197515/151‑1 (MQ=255) aGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTTCCCCCCCCCCCCCCGGGCGGTGCTTCGC‑AAAA‑TTT‑AAATACGCCCCCCGCGGGGTTTTTCTACTCCGGA‑GAGGGTTCACCCccaaa > 2:723175/1‑150 (MQ=9) aGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGacaaac < 2:935345/151‑1 (MQ=255) aTCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAg < 2:1006259/151‑1 (MQ=255) aTCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCCGCCCCCCACCCCCCCGGCCGGTGCTTCGC‑AACG‑TTC‑AAAAACCCCCCCCGCGGGGTTTTTCTTCTCCGGG‑GAGTGTTTCCCCacaaacaaaa > 2:852615/1‑148 (MQ=12) ccTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGa < 2:415672/150‑1 (MQ=255) ccTTTCGGATGGCCTTTCGCTTGATTTGAGGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGa < 2:722177/150‑1 (MQ=255) cTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTGCCCCCCCCCCCCCCGGGCGTTGCTTTGC‑AAAA‑TTC‑AAAACCCCCCCCCGCGGGGTTTTCCTACTCCGGA‑GAGTGTTTACCCCCAAaaaaca > 2:51958/1‑147 (MQ=255) cTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCCCCCCCCCACCCCCCCGGCCGTTGCTTCCC‑CACG‑TTT‑TAAAACCCTCCCCGCGGGGTTGTCCCACCCCGGA‑GAGAGTTTACCCacaaacaaaaaaa > 2:1100447/1‑145 (MQ=255) tttCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGTCTGCCCGCCCCCCCCCCGGGCGGTGCTTTGC‑CACC‑TTT‑AAAACCGCCCCCCGCGGGGTTTTTCTTCTCCGGG‑GGGTGTTTACCGacaaacaaaaaaaa > 1:540736/1‑144 (MQ=255) ttCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATaa < 2:342596/150‑1 (MQ=255) tCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATaaa < 1:266908/150‑1 (MQ=255) cGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTGCCCCCCCCCCCCCCGGGCGGTGCTTCGC‑AACG‑TTC‑AAAACCGCCCCCCGCGGGTTTGTCCTTCTCCGGG‑GAGGGGTTACCGCCAaaaaaaaaaaaaaa > 1:48551/1‑150 (MQ=255) ggATGGCCTCCCGCTTCCTTGGATGTCTGGCCGTTTCTGGCGGCCGTCCGGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCACTCCCGGCGGATTTGTCCTACTCGGGA‑GAGAGTTCACCGACAAACAACAGATaaaa < 1:31727/149‑1 (MQ=11) aTGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATAAAACaaa < 2:792738/151‑1 (MQ=255) aTGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCCTCCCGCCCCCCCCCCGGGCCTTTCCTCTC‑CACC‑TTT‑AAACCCCCCCCCCGCCGGTGTTTTCCCCTCCGGT‑GGGTGTTTACCCCCCAACAACAGAaaaaaaaa > 1:402247/1‑150 (MQ=255) ggCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCCTCCCCCCCCCCCCCCCGCCGGTGCTTCGC‑CACG‑TTC‑CAATCCGCTCCCCGCGGCGTTGTTCTTCCCGGGG‑GAGGGTTTTCCGCAAAAAAACAaaaaaaaaaaaa > 1:162300/1‑150 (MQ=255) ccTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGCCGATGTTCTCGCCACCCCCCCGGCCGTTGCTTCTC‑CATT‑CTCAAAATCCCTTCCCCCCGGATTTTTCCTCCTC‑TGA‑TAGGGTTCTCCGGCAAACCAAAAATAAAAAAAAAggg > 2:1250587/1‑150 (MQ=255) ccTTTCGCTTGATTTGATGTCGGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATAAAACAAAAgg < 1:386194/150‑1 (MQ=255) cTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCCGGCCGTTGCTTTTC‑AACC‑TTC‑AAAACCCCTCCCCGCGGGATTGTTCTACCCGGGA‑GAGGGTTTACCGACAAAAAAAAGAAAAAACaaaaaggc > 2:456111/1‑147 (MQ=14) tttCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCACCCTCCCGGCCGTTTCTTCGC‑AACG‑TTC‑AAATCCGCCCCCGGCCGGGTTTTCCCTCTCCGGA‑GAGGGTTTACCGCCCAACAACACATAaaaaaaaaa > 2:732199/1‑146 (MQ=14) gCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTc < 1:528955/151‑1 (MQ=40) gCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTc < 2:659310/151‑1 (MQ=40) cTTGATTTGATGTCTGGCAGTTTATGGCGGGCGCCCTGCCCCCCCCCCCCCGGGGCGCTGCTTCGC‑AAAG‑CTC‑AAATCCCCCCCCCGCGGGTTTGTCCTACTCCGGA‑GAGGGTTTCCCCCCAAAAAACAGAAAAAAAAAAAAGCCCaagc > 2:461029/1‑147 (MQ=255) gatttgatGTCTGGCATTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTc < 1:993765/150‑1 (MQ=255) atttgatGTCTGGCAGTTTATGGCGGGCGTCCCGCCCCCCACCCTCCCGGCCGTTGCTTTGC‑AAAG‑CTC‑AAATCCCCCCCCGGCGGGATTTTCCCCCTCCGGA‑GAGTGTTCCCCGCCACACAACAGATAAAACaaaaaaacccggctt > 2:1054892/1‑137 (MQ=2) tgatGTCTGGCAGTTTATGGCGGGCGGCCCGCCCGCCCCCCCCCCGGGCGGTGCTTTGC‑CAAC‑CTC‑AAAAACGCCCCCCGCCGGTTTTTTCTTCTCCGGAGGGGGGTTACCCCCCAAACAAAAACAAAAAAAAAAGCCCCAGCCTTcc > 1:1184420/1‑148 (MQ=255) ggCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCt < 1:372118/149‑1 (MQ=35) ggCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCt < 1:471890/149‑1 (MQ=35) gCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCtttt < 1:212598/151‑1 (MQ=37) tttATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGtt < 1:299412/150‑1 (MQ=38) tttATGGCAGGCATCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGtt < 2:628141/150‑1 (MQ=255) aTGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTa < 1:53833/150‑1 (MQ=38) aTGGCGGGCGCCCTCCCCGCCGCCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAGCAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTa < 1:940708/150‑1 (MQ=255) ggcgggcgTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTAtt < 2:1231915/150‑1 (MQ=38) gcgggcgTCCTGCCCGCCCCCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTg < 2:212297/151‑1 (MQ=38) gggcgTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGAt < 2:299184/151‑1 (MQ=38) gggcgTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGAt > 1:1207992/1‑151 (MQ=38) ggcgTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATg < 2:708966/151‑1 (MQ=38) gcgTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGt < 2:699456/151‑1 (MQ=39) gTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTc < 1:626837/150‑1 (MQ=40) ccTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTg < 1:1048614/150‑1 (MQ=40) gCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGc < 2:109520/149‑1 (MQ=40) ccGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGtt > 2:1215447/1‑151 (MQ=40) cGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGtt > 2:522685/1‑150 (MQ=40) cGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑GTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTc < 2:711194/151‑1 (MQ=255) gCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTcc < 1:735982/151‑1 (MQ=40) cccTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTa < 2:540752/150‑1 (MQ=40) ccGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTActct < 2:116756/150‑1 (MQ=40) cGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCg < 1:1150127/151‑1 (MQ=40) gggCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGc < 1:1087253/151‑1 (MQ=40) | AAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACG‑TTC‑AAATCCGCTCCCGGCGGATTTGTCCTACTCGGGA‑GAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGC > NC_000913/3423150‑3423447 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |