Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 1,698,747 | A→C | I145S (ATC→AGC) | malI ← | transcriptional repressor of Mal regulon |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 1,698,747 | 0 | A | C | 98.3% | 219.2 / ‑4.9 | 60 | I145S (ATC→AGC) | malI | transcriptional repressor of Mal regulon |
Reads supporting (aligned to +/- strand): ref base A (1/0); new base C (35/24); total (36/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01 |
GAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGATAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTGATTCAGTAACAGTGAAAACCGCTGTGCCAGCTGCTCACCGTCTTTACCGCCGTGAAGCAAAAAAAC > NC_000913/1698600‑1698892 | gAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTa < 1:680086/150‑1 (MQ=255) gAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCtt > 2:897697/1‑151 (MQ=255) aCTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCtttt < 1:1196770/151‑1 (MQ=255) gCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTttcttc > 2:850342/1‑151 (MQ=255) gCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTttctt < 1:920656/150‑1 (MQ=255) cccTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTtcttct < 1:1173499/151‑1 (MQ=255) acccagGCTTTTCGCTGATGCCCTTTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCCAACCGTATCAACATCATCAAGACAACCGGCCCGGGAAGCGAAAATCTCCTGGCTAGCTTTTTCTTCTGcaaccc < 2:1069186/149‑6 (MQ=255) gccagGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCg < 2:988026/151‑1 (MQ=255) gCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCa < 2:345997/151‑1 (MQ=255) cGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAg < 2:658762/151‑1 (MQ=255) cGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCAt > 2:734543/1‑151 (MQ=255) cGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCAt > 1:1100786/1‑151 (MQ=255) cccATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACtt > 2:546660/1‑151 (MQ=255) ttGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCt > 1:1073960/1‑150 (MQ=255) gCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGc > 2:1092689/1‑150 (MQ=255) gCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCa < 1:720221/151‑1 (MQ=255) cGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGc > 2:164290/1‑149 (MQ=255) aaTGAGATGCTCCGGCAACAACTGTGCAGCCTGCATGTTGTCCGGTCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCGGCt < 2:1092416/151‑1 (MQ=255) tCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACcac > 1:43845/1‑151 (MQ=255) caacaaCTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACcac > 2:656669/1‑150 (MQ=255) caacaaCTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACcac > 1:364490/1‑150 (MQ=255) aacaacTGCGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCacac > 2:1027194/1‑151 (MQ=255) acTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATc < 1:628387/151‑1 (MQ=255) acTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATc > 2:235788/1‑151 (MQ=255) acTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATc < 2:162367/151‑1 (MQ=255) tgtgCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCg > 2:924505/1‑150 (MQ=255) gtgCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGac > 1:137504/1‑151 (MQ=255) aGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACAccc > 1:901107/1‑151 (MQ=255) gCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCt < 2:251933/151‑1 (MQ=255) gCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCt < 1:980971/151‑1 (MQ=255) ccTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTg < 2:167047/151‑1 (MQ=255) tGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTGAt > 2:975518/1‑151 (MQ=255) gCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTGAtt > 2:961564/1‑151 (MQ=255) gCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTGAt < 2:896093/150‑1 (MQ=255) cATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTGATTc > 1:768041/1‑151 (MQ=255) ttgtCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTGATTCAGt > 2:215082/1‑150 (MQ=255) gtCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTGATTCAGTAAc > 1:791957/1‑151 (MQ=255) cGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTGATTCAGTAACAGt > 2:38100/1‑151 (MQ=255) gggCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTGATTCAGTAACAGTg > 2:316170/1‑151 (MQ=255) gggCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTGATTCAGTAACAGTg > 1:247280/1‑151 (MQ=255) cGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTGATTCAGTAACAGTGaa > 1:374129/1‑150 (MQ=255) gAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTGATTCAGTAACAGTGaaaa < 2:253929/151‑1 (MQ=255) cGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTGATTCAGTAACAGTGAAAACCGc > 2:270495/1‑151 (MQ=255) cGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTGATTCAGTAACAGTGAAAACCGc > 2:505869/1‑151 (MQ=255) gTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCGCCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTGATTCAGTAGCAGTGAAAACCGCt < 2:945057/151‑1 (MQ=255) aCATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTGATTCAGTAACAGTGAAAACCGCTGTGcc > 2:444053/1‑150 (MQ=255) aCATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTGATTCAGTAACAGTGAAAACCGCTGTGcc > 1:293631/1‑150 (MQ=255) catcatCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTGATTCAGTAACAGTGAAAACCGCTGTGCCAg < 1:101361/151‑1 (MQ=255) catcaAGATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTGATTCAGTAACAGTGAAAACCGCTGTGCCAgctg < 1:270506/151‑1 (MQ=255) gATAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTGATTCAGTAACAGTGAAAACCGCTGTGCCAGCTGCTCAcc < 1:813055/151‑1 (MQ=255) aTAACTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGACATAGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTGATTCAGTAACAGTGAAAACCGCTGTGCCAGCTGCGCACCg > 2:524592/1‑151 (MQ=255) aaCTGGCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCAGCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTGATTCAGTAACAGTGAAAACCGCTGTGCCAGCTGCTCACCGTc < 2:439891/151‑1 (MQ=255) ggCACGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTGATTCAGTAACAGTGAAAACCGCTGTGCCAGCTGCTCACCGTCtt < 2:1183106/149‑1 (MQ=255) aCGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTGATTCAGTAACAGTGAAAACCGCTGTGCCAGCTGCTCACCGTCTTTAccg > 1:626516/1‑151 (MQ=255) cGGGAAGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTGATTCAGTAACAGTGAAAACCGCTGTGCCAGCTGCTCACCGTCTTTAccgc > 1:980130/1‑151 (MQ=255) aaGCGAAAATCCCCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTCCTCCCTGCAGCTCCGGCAATTTCCCCACCAGCGACACCCTGATTCAGTAACAGGGAAAACCGCTGTGCCAGCTGCTCACCTTCTTTACCGCCGt < 2:1104105/150‑1 (MQ=255) aGCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTGATTCAGTAACAGTGAAAACCGCTGTGCCAGCTGCTCACCGTCTTTACCGCCGTg > 1:612408/1‑150 (MQ=255) gCGAAAATCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTGATTCAGTAACAGTGAAAACCGCTGTGCCAGCTGCTCACCGTCTTTACCGCCGTGa > 2:774769/1‑150 (MQ=255) aaaaTCACCGGGCTAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTGATTCAGTAACAGTGAAAACCGCTGTGCCAGCTGCTCACCGTCTTTACCGCCGTGAAGc > 1:1067295/1‑150 (MQ=255) ccGGGATAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTGATTCAGTAACAGTGAAAACCGCTGTGCCAGCTGCTCACCGTCTTTACCGCCGTGAAGCAAAAAAAc > 2:1037810/1‑151 (MQ=255) | GAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGATAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTACCACACCATCGACACCCTGATTCAGTAACAGTGAAAACCGCTGTGCCAGCTGCTCACCGTCTTTACCGCCGTGAAGCAAAAAAAC > NC_000913/1698600‑1698892 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |