| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 599,576 | 0 | T | G | 40.7% | 125.8 / 31.8 | 83 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| Reads supporting (aligned to +/- strand): ref base T (4/44); new base G (33/0); total (39/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.23e-18 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGAC > NC_000913/599429‑599721 | cGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGggggggggggg > 1:371781/1‑150 (MQ=255) acgacTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGgggggggggggg > 2:79629/1‑144 (MQ=255) gacTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGGCGGggggtggtgc > 1:118207/1‑144 (MQ=255) aaTCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGGGGGGGGGGGGACCT‑GCGGTcc > 2:225861/1‑150 (MQ=255) aaTCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGTTCT‑GTGATcc > 1:1233390/1‑150 (MQ=255) cacaTCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑a < 2:1331539/151‑1 (MQ=255) caTCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑aaa < 1:948865/151‑1 (MQ=255) aTCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGTGGTACT‑GCGGGAC‑G‑GC‑aa > 1:1264730/1‑149 (MQ=255) aTCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGTCCT‑GCGGTCC‑G‑GC‑caa > 2:239925/1‑150 (MQ=255) aTCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGATCCT‑GCGATCC‑G‑GC‑caa > 1:1233960/1‑150 (MQ=255) aGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGGGGGGGGGTGGTTCT‑GCGAGCCGG‑GC‑AAAAAC‑CCCga > 1:1069204/1‑148 (MQ=255) gCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGaa < 1:93301/150‑1 (MQ=255) ccAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGt < 1:1212081/151‑1 (MQ=255) ccAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGt < 2:696426/151‑1 (MQ=255) aGTGAAAATGGCGTGCCCGTTTATCTGCGCTATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGa < 1:730171/151‑1 (MQ=255) aGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGa < 2:310842/151‑1 (MQ=255) gTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGTTCT‑GCGGTCC‑G‑GC‑AAAAACGCCCGGGAAGTg > 1:940502/1‑149 (MQ=255) gAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATc < 1:708603/150‑1 (MQ=255) aaaaTGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATcgc < 1:878500/151‑1 (MQ=255) aaaTGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGGGGGGAGGGGGTCCC‑GCGATCC‑A‑GG‑AACAAAGTCCGGGAAGCGAt > 1:142632/1‑147 (MQ=255) aaaTGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATcgcc < 2:318696/151‑1 (MQ=255) aaaTGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATcgcc < 1:227926/151‑1 (MQ=255) ggCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCgccgcc < 2:418614/150‑1 (MQ=255) gTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGGGGGGGGGTGATCCT‑TCGCTAC‑C‑GC‑GAAAACGCCCGAGAAGGGTTGGccgccg > 1:320068/1‑148 (MQ=255) gTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGa < 1:1157921/151‑1 (MQ=255) cccGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGGGGGGGGGGGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGGAGGGATCGCCGCCGTGAAgg > 1:805848/1‑151 (MQ=255) cccGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGTGGTCCC‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAgg > 1:253348/1‑151 (MQ=255) ttATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACaa < 1:480642/150‑1 (MQ=255) ttATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACaa < 1:728638/150‑1 (MQ=255) ttATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACaa < 2:105479/150‑1 (MQ=255) tATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGTCCC‑TCGGTCC‑G‑GC‑AAAAAAGCCCCAGAAGTGAGcggccccccgcaggac > 2:196453/1‑133 (MQ=255) aTCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAAc < 2:201666/150‑1 (MQ=255) tCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGTCCT‑GCGGTCC‑G‑GC‑AAAAAAGCCCCAGAAGGGATCGCCGCCGGGGAGGACaaa > 2:861163/1‑148 (MQ=255) tCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGCGGGGGGGGTGATCCT‑CGGTAAC‑G‑GC‑GAAAAACCCCGAAAAGGGATAGCCCCCGCGGAGGCCAAACTg > 1:102003/1‑151 (MQ=255) cTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGCGGGGGGGGGGGCCCT‑CCGACCC‑A‑GC‑AAAAACGCCCGCGGAGTGGTGGCCGCCGGGAAAGGCaaaactg > 2:1262743/1‑147 (MQ=255) gcgcGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTgg < 1:1310481/149‑1 (MQ=255) gcgcGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGaa < 1:1203721/151‑1 (MQ=255) gcgcGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGaa < 2:857653/151‑1 (MQ=255) gcgcGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGTCCC‑GGGTGAC‑G‑GC‑AAAAAACCCCCAGGAGTGGTTGCCCCCCTGAAggggaa > 2:1150473/1‑140 (MQ=255) gcgcGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGATCCT‑GCGAGCC‑C‑GC‑CAAAAAGCCCGAGAAGGGAACGCCCCCGCGCAGGACAAAATgg > 1:1622/1‑149 (MQ=255) cgcgATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGTAGGGTGGTTATCCT‑CCAAGCC‑G‑GC‑CAAAACATCCGAGTGATGATTGCCGGCGGGAAGGACAAAccgata > 1:435664/1‑145 (MQ=255) gcgATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAAc < 1:1093024/151‑1 (MQ=255) gATGTTGCGAAGGTCCGGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGc < 1:578094/151‑1 (MQ=255) aTGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCt < 2:732590/151‑1 (MQ=255) tGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGTGATCCT‑CCGGTCC‑G‑GC‑AAAAAAGCCCGAGAAGTGATCGCCGCCGTGGAGGACAAAATGGAAACGCt > 1:825104/1‑150 (MQ=255) tGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGGGGGGGGGTGGTCCT‑GCGGTCC‑G‑GC‑AAAAAAGCCCGAGAAGTGATCGCCGCCGTGAAGGGCAAACTGGAAACACTGaa > 1:1139324/1‑150 (MQ=255) tGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGaa < 2:1241565/150‑1 (MQ=255) gAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGAGCCT‑GCGGGCC‑C‑GC‑AAAAAAGCCCGAGAAGGGATCGCCGCCGGGGAGGACAAAACGGAAACGCTGaaa > 1:572399/1‑148 (MQ=255) gAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGAATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAag < 1:267849/150‑1 (MQ=255) aGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGGGGGGGGGGGATGCT‑TAGAGCT‑GCGC‑AAAAA‑GCCCAGGCAGGGCTGGGCGGCGTGAAGGGCAAACAGGAAAcagcgagaaggatga > 2:659272/1‑133 (MQ=255) aTTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGTTCT‑GCGATCC‑C‑GCAAAAAAACCCCGGGAAG‑GGGGGCCGCAGCGGAAGACAAACTGGAAAACCTGgaaatgtggcggccgg > 2:961655/1‑139 (MQ=255) tGGCCCGGAGATGCGCCGGGGCATTGCCGAACTGAACGGCGAAGGCGAAGTGGCGGGGGGGGGGGGGGTCCC‑GCGGTCC‑G‑GC‑AAAAAACCCCGAGAAGGGGTCGCCGCCGGGAAGGGAAAACAGGGAACGCTGAAAAGGAGGCTGCCgg > 2:747274/1‑149 (MQ=255) ggCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCCGGGGGGGGGTCCC‑GCGGGCC‑C‑GG‑CAAAACGCCCCCGGAGTGATCGCCGCCCTGCAGGGCAAACTGGGAACGGTGgaaaagaacgtggccg > 2:355256/1‑136 (MQ=255) gCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAgg < 2:235317/151‑1 (MQ=255) cccGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGATCCC‑GCGATCC‑C‑GC‑AAAAAAGCCCGGGAAGGGAACGCCGCCGGGGAGGACAAAACGGAAAAGCTGAAAAGGAGGCTGCCGGAAgg > 2:1275726/1‑150 (MQ=255) ccGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGGGGGGGGGGGGTCCT‑GCGATCC‑G‑GC‑CAAAACGCCCGGGAAGGGATCGCCGCCGGGGAGGACAAACTGGAAACGCTGAAAAGGAGTCAGCCGGGAgg > 2:1185914/1‑149 (MQ=255) ggAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGAGGGGGTCCT‑GCCCTCC‑C‑GG‑AAAAACGCCCGAGAAGTGGTTGCCGCCGTGAAGGACAAAATGGAAACGCTGAAAAAGAGTCTGGCGGGAGGCg > 1:533818/1‑149 (MQ=255) gagaTGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTgg < 1:879961/151‑1 (MQ=255) gaTGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGga < 1:403296/150‑1 (MQ=255) tGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGTCCT‑GCGGTCC‑G‑GG‑AAAAAAGCCCCAGAAGTGATCGCCCCCGTGAAGGACAAACCGGAAAAGCTGAAAAGAAGTATGCCGGAAGGCgggggg > 1:228752/1‑147 (MQ=255) gcgcCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGGCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATa < 2:1248427/151‑1 (MQ=255) cgcCGGGGCATGGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATa < 2:871808/150‑1 (MQ=255) ggggCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATTGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTa < 2:111896/150‑1 (MQ=255) gggCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTaca < 1:29583/151‑1 (MQ=255) gggCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGTCCT‑GCGTTCC‑T‑GG‑AAAAACGCCCGTGAAGAGATAGCCCCCGTGAAGGACAAACTGGAAAAGCTGAAAAGTAGGTTGCCGGGAAGCGGGGGGAAAGtt > 1:741385/1‑148 (MQ=255) aTTGCCGAACTAAACGGGGAAGGCGAAGTGGCGGGCGGGGGGGAGGGCCTCGCATTCG‑G‑GC‑AAAAACGCCC‑AGGAGGGAACGCCGGCCGGGAGGGCCAACAGGGAAAACGGAAAAAGAGGCAGGCGGGAGGCGGGGAGAAAGGTacaaa > 2:40173/1‑148 (MQ=255) ttGCCGAACTAAGCGGCGAAGGCGATGTGGCGGGCGGGTTGGTGATCCT‑GCGATCC‑G‑GC‑AAAATCGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACAt < 2:792635/150‑1 (MQ=255) gCCGAACTAAACGGCGAAGGCGAAGTGGCGGGGGGGGGGGAGAGCCT‑GCGCTCC‑C‑GC‑AAAAAAGCCCCAGGAGGGATCGCCGCCGGGTATGGCAAAACGGAAACGCCGAAAAGGAGACTGCCGGAAAGCGGGGGGGAAGTTACAACATAc > 1:883307/1‑150 (MQ=255) aaCTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCg < 2:580185/151‑1 (MQ=255) aCTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGc < 1:225867/151‑1 (MQ=255) aaaCGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGcagc < 1:251558/151‑1 (MQ=255) aaaCGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGca < 2:563139/149‑1 (MQ=255) aaaCGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGTCCT‑GCGATCC‑G‑GC‑AAAAAAGCCCGAGAAGAGATCGCCGCCGTGAAGGACAAACTGGAAAAGCTGAAAAGTAGTCTGCCGGAAGGGGTGGAGATAGTTAAAACATACGATCGcag > 1:589362/1‑150 (MQ=255) aaaCGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGATCCT‑GCGGTCC‑G‑GC‑AAAAACGCCCGAGGAGTGGTCGCCGCCGTGAAGGACAAAATGGAAACGCTGAAAAGTAGTCTGCCGGAAGGGGGGGGGATAGTTACAACATAAGATCGc > 1:781821/1‑148 (MQ=255) aCGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGcagcca < 1:1184968/151‑1 (MQ=255) ggcgaaggcgaaGTGGCGGGCGGGGTGGTGATCCT‑GCGAGCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGcagccag < 2:537266/150‑1 (MQ=255) gaaggcgaagTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTc < 1:60753/150‑1 (MQ=255) gaaggcgaagTGGCGGGCGGGGGGGGGATCCT‑GCGATCC‑G‑GC‑AAAAAAGCCCGAGAAGGGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGGAGGCGGGGGGATAGTTACAACATACGAACGcagccagccc > 1:281049/1‑148 (MQ=255) gaaggcgaagTGGCGGGCGGGGGGGGGAGCCC‑TCCGCCC‑C‑GC‑AAAAAAACCCGCGGAGTGGTCGCCGGCGGGAAGGACAAACAGGGAACGCCGGAAAGGAGTATGCCGGGAAGCGGGGAGATAAGTAAAAAATAcagaatcagcccactc > 2:1246065/1‑135 (MQ=255) aagTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACcg < 2:349279/151‑1 (MQ=255) aagTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACcg < 1:676106/151‑1 (MQ=255) gcgggcggGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGcc > 1:1326007/1‑150 (MQ=255) gggcgggGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATc > 2:382029/1‑151 (MQ=255) gggcgggGTGGCGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATc > 1:1301882/1‑151 (MQ=255) ggcgggGTGTTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCg < 1:1186672/151‑1 (MQ=255) cgggGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGAc < 1:634339/151‑1 (MQ=255) | CGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCT‑GCGATCC‑G‑GC‑AAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGACAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGAC > NC_000913/599429‑599721 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |