Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913345,3280CA42.1% 139.7 / 47.7 76intergenic (+337/‑76)yahL/yahMuncharacterized protein/uncharacterized protein
Reads supporting (aligned to +/- strand):  ref base C (39/5);  new base A (0/32);  total (39/37)
Fisher's exact test for biased strand distribution p-value = 1.62e-16
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGA  >  NC_000913/345178‑345469
                                                                                                                                                      |                                                                                                                                             
taAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATc                                                                                                                                               >  1:1136609/1‑151 (MQ=255)
 aaaaaaTGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCa                                                                                                                                              <  2:1089046/151‑1 (MQ=255)
    aaaTGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCaaa                                                                                                                                            >  2:694705/1‑150 (MQ=255)
        gATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAAcc                                                                                                                                        <  2:1168708/150‑1 (MQ=255)
         aTCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGc                                                                                                                                      >  2:311455/1‑151 (MQ=255)
             cATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCa                                                                                                                                    <  1:185941/149‑1 (MQ=255)
             cATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCAtt                                                                                                                                  >  1:959454/1‑151 (MQ=255)
             cATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGAGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCa                                                                                                                                    <  2:834348/149‑1 (MQ=255)
                  aGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCtc                                                                                                                             >  1:835262/1‑151 (MQ=255)
                    aTGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCtc                                                                                                                             >  1:1116315/1‑149 (MQ=255)
                              aaTGTTTTGGTTGACATTCATATAAAAAAAATCATATTTCCATCATGTTTGTGGGGGTTTTTTTCTGTATCTTCCCCCCCGCACTCAAGCCTAAGAGAAAATATGCTGTAAGGCTCATATAAAAACCCGCCATTAGCTCATCAGGaa                                                                                                                     <  1:137639/147‑1 (MQ=255)
                                tttttttgttaACTTTCATATAAAAAAAATAATAATCCCATCTTTTTGGTGTGGGTTTTTTTTTTTTTTTTCCCCACCGCACCCAACCCTGAAAAAAAATATGCGAAAAGCCTAATATAAAAAACCGCCATTAGCTCATCAGGa                                                                                                                      <  2:1044604/137‑1 (MQ=255)
                                     tggttgACATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAgacgac                                                                                                          >  1:641345/1‑151 (MQ=255)
                                      ggttgACATTAATATAAAAAAAATCAAAATCCCATCATGTTTGTGGGGGTTTTTTTCTGTATCTTCCGCACCGCACTCAAGCCTAAAAAAAAATATGTTGTAAGGCTCATATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAgacgac                                                                                                          <  1:993207/150‑1 (MQ=255)
                                        ttgACATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTATGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACaa                                                                                                        >  2:691939/1‑150 (MQ=255)
                                        ttaactttCATATAAAAAAAATCAAAATCCCATCTTGTTGGGGTGGGTTCTTTTCTTTATTTTCCGCACCCCCCTCAACCCTGACAAAAAATATGTTGAAAGCTTCATAAAAAAAACCGCCATTAGCTCATCAGGAaga                                                                                                                   <  1:847855/133‑1 (MQ=255)
                                          gACATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAAcc                                                                                                      >  1:470156/1‑150 (MQ=255)
                                           aCATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAAcc                                                                                                      >  1:872166/1‑149 (MQ=255)
                                            cATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAgg                                                                                                   >  2:253190/1‑151 (MQ=255)
                                              ttaatatAAAAAAAATCATAATCCCATCTTTTTGGTGTGGGTTTTTTTCTGTATCTTACGCACCCCACTCAAGCCTGACAAAAAATATGCTGAAGGCCTCATATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCa                                                                                                     <  2:187849/144‑1 (MQ=255)
                                               tCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGAtt                                                                                                >  1:830454/1‑151 (MQ=255)
                                               tCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGAtt                                                                                                >  2:1102220/1‑151 (MQ=255)
                                                  tataAAAAAAATAATATTCCCATCTTTTTTGTGGGGGTTTTTTTCTGTTTCTTCCGCACCCCCCTAAAGCCTAAAAAAAAATTTGCTGTAAGCCTAATATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGAtt                                                                                                <  1:208540/148‑1 (MQ=255)
                                                  tatGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGAttgtt                                                                                             >  1:663253/1‑151 (MQ=255)
                                                     aaaaaaaaTCATAATCCCATCATTTTTGTGGGGGTTTTTTTCTTTATCTTACGCACCGCACCCAACCCTGAAAAAAAATATGCTGTAGGCCTCATATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATtgttgt                                                                                           <  2:263343/149‑1 (MQ=255)
                                                     aaaaaaaaTAATAATCCCATAATTTTTGTGGGGGTTTTTTTCTTTATCTTACGCACCGCACTCACCCCTGACAAAAAATATGTTTTAAGCCCCATAAAAAAATCCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGAttg                                                                                               <  2:25562/145‑1 (MQ=255)
                                                      aaaaaaaaaaaaATCCCATCTTGTTTGTGGGGTTTTTTTTCTGTTTCTTCCCCACCGCCCTCAACCTTAACAAAAAATATGCTGAAAGCCTAATATAAAAATCCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTAt                                                                                         <  2:1124133/151‑1 (MQ=255)
                                                      aaaaaaaTCAAATTCCCATCTTGTTGGGGTGGGGTTTTTTCTGTATCTAACGCCTCGCTCCCAGCCCAGACAAAAAATATGCTGTAAGTCTAAAAAAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGAttgt                                                                                              <  1:1190553/146‑1 (MQ=255)
                                                      aaaaaaaTAATAATCCCATCTTTTTGGTGGGGGTTTTTTTTTGTATCTTCCGCACCCCACAAAGCCCTAAAAAAAAAAAGGCTGAAAGCCAAAAATAAAATTCCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTAt                                                                                         <  2:248033/151‑1 (MQ=255)
                                                       aaaaaaTCATAATCCCTTCATTTTTGTGGGGGGTTTTTTCTTTTTCTTCCGCACCCCCCTAAAGCCTGACAAAAAATATGCTGTAAGGTTAATATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATg                                                                                        <  1:619814/151‑1 (MQ=255)
                                                       aaaaaaTCAAAATTCATTATTGTTTGTGGGGGTTTTTTTCTTTCTCTTACGCATCGCTCCAAAGCCTAAAAAAAAATTGGATTAAAGGCACAAATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATg                                                                                        <  2:581644/151‑1 (MQ=255)
                                                         aaaaTCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGt                                                                                      >  2:603980/1‑151 (MQ=255)
                                                         aaaaACATAACCCCATCTTTTTTGTGGGGGTTCTTTTCTTTATCTTACGCACCCCACCAACCCCTAACAAAAAATGTGTTGTAGGCCTCAAATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGt                                                                                      <  2:435009/151‑1 (MQ=255)
                                                          aaacaaaaaTCCCATCATTTTTGTGGGGGTTTTTTTCTTTATCTTACGCACCCCACCCAACCCTAAAAAAAAATAGGTTGTAAGGCTAATATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTa                                                                                     <  2:886185/144‑1 (MQ=255)
                                                          aaaTCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGt                                                                                      >  1:1177367/1‑150 (MQ=255)
                                                          aaaTCATAATCCCATCATGTTTGTGTGGGTTCTTTTCTGTATTTTACGCAGCGCCCTAAAGCCTAAAAAAAAATATGCTGTAAGCCTAATAAAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTa                                                                                     <  1:131722/151‑1 (MQ=255)
                                                           aaTCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTAc                                                                                    >  2:657878/1‑151 (MQ=255)
                                                            aTCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACg                                                                                   >  2:529268/1‑151 (MQ=255)
                                                             tCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACgg                                                                                  >  1:586811/1‑151 (MQ=255)
                                                              cATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACggg                                                                                 >  1:1158261/1‑151 (MQ=255)
                                                               aTAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACgggg                                                                                >  2:537819/1‑151 (MQ=255)
                                                                 aaTTCCATCATGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGt                                                                               <  1:891157/150‑1 (MQ=255)
                                                                 aaTCCCATCTTTTTTGTGTGGGTTTTTTTTTGTATCTTACGCACCGCCCCAAAGCCTGAAAAAAAATATGCTGTAAGTCTAATATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGtt                                                                              <  1:839193/151‑1 (MQ=255)
                                                                     ccATCATGTTTGTGGGGGGTTTTTTCTGTATCTTACGCATCGCACTCAAGCCTGAAAAAAAATAGGCTGAAAGGCTCATATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGa                                                                           <  1:419868/150‑1 (MQ=255)
                                                                        tcatTTTTGTGTGGGGTTTTTTCTGTATCTTCCGCACCCCACTCAAGCCGAAAAAAAAATATGCTGAAAGGCTAATATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAgg                                                                         <  2:887436/149‑1 (MQ=255)
                                                                        tcatGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGcc                                                                       >  1:725188/1‑151 (MQ=255)
                                                                         catGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCt                                                                      >  2:457029/1‑151 (MQ=255)
                                                                         catGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCt                                                                      >  2:1034618/1‑151 (MQ=255)
                                                                         catGATTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAggac                                                                       >  2:1035801/1‑148 (MQ=255)
                                                                          atGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTc                                                                     >  1:65058/1‑151 (MQ=255)
                                                                           tGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCg                                                                    >  2:856620/1‑151 (MQ=255)
                                                                              ttGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATg                                                                 >  1:1021216/1‑151 (MQ=255)
                                                                               tgtgtgGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCAATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATgg                                                                >  2:1139468/1‑151 (MQ=255)
                                                                                gtgggGGTTTTTTTTTGTATCTCACCCACCCCACACAAGCGAAAAAAAAAATATGCGGAAGGGCCAATATAAAAACCCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCg                                                                    <  2:1215823/146‑1 (MQ=255)
                                                                                 tgtgGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCg                                                              >  2:742204/1‑151 (MQ=255)
                                                                                      ggTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTcc                                                          >  1:234214/1‑150 (MQ=255)
                                                                                              cTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTc                                                  >  1:868362/1‑150 (MQ=255)
                                                                                                   tctaccgcaccccccTCAACCCTAAAAAAAAATTTTCTGAAGGGCTAAAACAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTc                                                  <  1:445408/131‑1 (MQ=255)
                                                                                                      tACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACtctt                                         >  1:802146/1‑151 (MQ=255)
                                                                                                        cgcaccgcacCCAAGCCTAAAAAAAAATATGCTGTAAGGCTCAAATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAActc                                           <  1:1034630/147‑1 (MQ=255)
                                                                                                        cGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACtcttct                                       >  1:1216711/1‑151 (MQ=255)
                                                                                                          cATCGCACCCAAGCCAAAAAAAAAATATGCTGTAGGGCTAAAAAAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTg                                      <  1:631181/150‑1 (MQ=255)
                                                                                                             cGCACTCACGCCTGAAAAAAAATTTATTGTAAGCCTCATATAAAAACCCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACtcttct                                       <  1:1123623/146‑1 (MQ=255)
                                                                                                                       cctaaaaaaaaaTATGTTGTAAGGCTAATATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCt                         <  2:1136594/142‑1 (MQ=255)
                                                                                                                       cctaaaaaaaaaTATGTTGAAAGCCTCATAAAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCtt                        <  2:42553/143‑1 (MQ=255)
                                                                                                                        ctaaCAAAAAATATGCTGTAAGGCTCATAAAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCtt                        <  2:296373/147‑1 (MQ=255)
                                                                                                                           aCAAAAAATATTCTGTAAGCCTAATATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCttatta                    <  2:728587/151‑1 (MQ=255)
                                                                                                                             aaaaaaaaTGCTAAAAGCCTAATAAAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGAt                              <  2:253950/137‑1 (MQ=255)
                                                                                                                             aaaaaaTATGCTTAAAGCCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTtattat                   <  1:1040085/148‑1 (MQ=255)
                                                                                                                             aGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTatc                  >  1:708530/1‑151 (MQ=255)
                                                                                                                               aaaaTATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTatcat                >  2:207232/1‑151 (MQ=255)
                                                                                                                                 aaTATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGATCGAGGCCACGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATcc              >  1:836628/1‑151 (MQ=255)
                                                                                                                                  atatGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATccc             >  1:500838/1‑151 (MQ=255)
                                                                                                                                          tAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGt     >  2:1092152/1‑151 (MQ=255)
                                                                                                                                           aaGGCTCATAAAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTg    <  1:472067/151‑1 (MQ=255)
                                                                                                                                             gcctaatatAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGTTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTgg   <  2:55588/145‑1 (MQ=255)
                                                                                                                                              gCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGa  >  1:1101266/1‑150 (MQ=255)
                                                                                                                                                      |                                                                                                                                             
TAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCATGTTTGTGTGGGGTCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGA  >  NC_000913/345178‑345469

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑