| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,825,056 | 0 | G | A | 40.8% | 104.3 / 35.6 | 71 | intergenic (‑119/+84) | ves/spy | cold‑ and stress‑inducible protein/periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| Reads supporting (aligned to +/- strand): ref base G (40/2); new base A (0/29); total (40/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.79e-18 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGACATTTTACGCATATCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTCAAAA > NC_000913/1824908‑1825203 | cGACATTTTACGCATATCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑gagaagagaa < 2:232214/151‑1 (MQ=255) aCATTTTACGCATATCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGagaaa > 2:682498/1‑150 (MQ=255) aTTTTACGCATATCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGagaaaaga < 1:400190/151‑1 (MQ=255) ttttACGCATATCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGC‑TTTTTTA‑CAACTGTTT‑GAGAAGagaaaagaa > 1:1140408/1‑150 (MQ=255) ttACGCATATCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGagaaaagaaa > 1:959987/1‑150 (MQ=255) taagCATATCAAAGTATTCCATACCCGCTCCCCGACCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTTGTCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGagaaaag < 1:787642/143‑1 (MQ=255) tACGCATATCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAAc > 2:35995/1‑151 (MQ=255) tACGCATATCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAAc > 2:1128030/1‑151 (MQ=255) gCATATCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAAccgc > 1:314993/1‑151 (MQ=255) atatCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAAccgccg > 2:547642/1‑151 (MQ=255) tatCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAAccgccg > 1:861499/1‑150 (MQ=255) cAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑gagaagagaa < 1:887908/134‑1 (MQ=255) cAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑gagaagagaa > 2:887912/1‑134 (MQ=255) aTTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTcc > 1:1262884/1‑150 (MQ=255) ttCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCAc > 1:1041277/1‑151 (MQ=255) ttCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCAc > 1:416158/1‑151 (MQ=255) ccatccccccccccGCCCCTTTTTTTTCTTTGTTATCTTTCAGGAACCCGTGGATGGTTATCGGC‑AACTGGGGTGTTTTAC‑TTTGGTGGTGATCAGGTTTTTTTTA‑CAATTTTTT‑GAAAAAAAAAAAAAAAACCGCCGATCCTGTCCAcc < 2:664738/139‑1 (MQ=255) aTACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGc > 2:52065/1‑150 (MQ=255) tACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCAt > 2:151416/1‑151 (MQ=255) cTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCAtt > 1:804352/1‑150 (MQ=255) ccGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCa > 2:384248/1‑149 (MQ=255) cGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAgg > 1:421003/1‑151 (MQ=255) ggccttttttttttatttttaTGTTTGAGGTACCCGGGGAGGTTTAGCGGC‑AACTGGGGTGATTTGC‑GTTAGTGGTGATCAGGTTTTTTTTA‑CAGCTTTTT‑GAGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCAt < 1:1231595/131‑1 (MQ=255) cccGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGt > 1:1225720/1‑149 (MQ=255) ttCTTTTTATTGTTTTCGTTCAGGTACCGGTGGATGTTTATCGGC‑AACTGGGGTATTTTAC‑GTTAGTGGTGATCGGGTTTTTTTTA‑CATTTGTTT‑GAAAAAAAAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGt < 2:590432/148‑1 (MQ=255) ttCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTgg > 1:1197916/1‑150 (MQ=255) cTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGAc > 2:414519/1‑150 (MQ=255) tttttttCGTTAAGGAAACGTTGGTTGGTTAGCGGC‑‑ACTGGGGGTGTTTACTGTTGGGGGGGAGC‑GGTTTTTTTTACCAGCTGTTT‑GAAAAGAAAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGAcc < 1:995155/143‑1 (MQ=255) ttttCGTTCGGGTACCCGGGGTTGGTTATCGCC‑AACTGGGGTGATTTAC‑GTTAGTGGTGATCAGTTTTTTTTAA‑CAATTTTTG‑GAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACcggc < 1:252559/146‑1 (MQ=255) tCGTTCAGGTAACCGTGGATGGTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGGTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACcggcgggc > 1:904132/1‑148 (MQ=255) ttCAGGTAACCGTGGATGGTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCtt > 2:863353/1‑149 (MQ=255) ttCAGGTAACCGGGGTTGTTTACCGGC‑AACTGGGGTGATTTAC‑TTTAGGGGTAATCGGGTTTTTTTTA‑CACCTTTTG‑GAAAAGAAAAAAAAAACCCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGt < 1:667371/146‑1 (MQ=255) tgcgggTAACGGGGGTTGTTTATCGGC‑ACCTGGGGTTTTTTAC‑GTTAGGGGTGATCAGTTTTTTTTTA‑CATTTTTTG‑GAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGt < 2:1055768/142‑1 (MQ=255) tCAGGTAACCGTGGATGGTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCtt > 1:140278/1‑148 (MQ=255) ggTACCGGTGGATGTTTATCGGC‑ACCTGGGGTATTTTAC‑TTAGGTGGTGATC‑GGTTTTTTTTA‑AAAACGTTTAAAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTaa < 1:810763/147‑1 (MQ=255) aaCCGGGGATTGTTTGCGGC‑AACTGGGGTGATTTAC‑GTTAGGGGTGGTGGGTTTTTTTTTA‑CAACTTTTT‑AAAAAGAGAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGtttttt < 1:429589/151‑1 (MQ=255) cgcGTGGATGTTTACCGGA‑AACTGGGATATTTTAC‑GTTGGCGGTAATCGATTTTTTTTTA‑CCCTGGTTG‑GAGAAAAAAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAg < 1:228055/142‑1 (MQ=255) cggTGGTTGGTTACCGCC‑ACCTGGGGTGTTTTAC‑TTTGGTGGTGATCGGTTTTTTTTTA‑AAACTGTTG‑GAAAAAAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTgg < 1:1106667/149‑1 (MQ=255) tgtttATCGGA‑AACTGGGGTGTTTTAC‑TTTAGTGGTGATCAGTTTTTTTTAA‑CAATTGTTT‑GAGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGaaa < 1:960742/147‑1 (MQ=255) tGGTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTTAGTTTTTTGGCTGaa > 1:165923/1‑149 (MQ=255) gtttATGGGC‑ATCTGGGGTGTTTTAT‑TTTGGTGGTGTTCCGTTTTTTTTTA‑AATGTGTTT‑GAAAAAAAAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTg < 2:857788/140‑1 (MQ=255) gTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTTGCTGaa > 1:311810/1‑147 (MQ=255) gTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTTGCTGaa > 2:644662/1‑147 (MQ=255) ttCGGCAAACTGGGGTGTTTTAC‑TTTGGTGGTGATCAGGTTTTTTTTA‑CAATTTTTA‑GAAAAAAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGatt < 1:966334/149‑1 (MQ=255) tCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGGAAGattatt > 1:111799/1‑151 (MQ=255) cGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGattatt > 1:555459/1‑150 (MQ=255) ggC‑AACTGGGGTGATTTAC‑GTTAGTGGTGATCAGGTTTTTTTTA‑CAACTGTTA‑GAGAAAAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTca < 1:890833/151‑1 (MQ=255) ggaaaCTGGGGTGATTTAC‑GTTAGTGGTGATCAGTTTTTTTTAA‑AAACTGTTG‑GAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGattatt < 1:719901/146‑1 (MQ=255) gC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGattatt > 1:394213/1‑148 (MQ=255) aaCTGGGGTGATTTAC‑GTTGGTGGTTATCAGTTTTTTTTTA‑AAACTTTTG‑AAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTcag < 1:404629/149‑1 (MQ=255) cctggggTGTTTTAC‑TTTGGTGGTGATCAGGTTTTTTTTA‑AAATTGTTG‑GAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTcagca < 2:1075832/146‑1 (MQ=255) aCTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTcagc > 2:6691/1‑149 (MQ=255) tCGGGTGTTTTAC‑TTTGGTGGTAATCAGTTTTTTTTTA‑CAATTGTTG‑GAGAAGAAAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTcagcag < 1:1231592/149‑1 (MQ=255) tGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTCA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAgg > 2:625006/1‑151 (MQ=255) tttAC‑TTTAGTGGTAATCGGGTTTTTTTTA‑CAATTTTTT‑GAAAAAAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAg < 1:112176/147‑1 (MQ=255) aC‑GTTAGTGGTGATCGGGTTTTTTTTA‑CAACTGTTT‑GAAAAAAAAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCAttt < 2:654444/150‑1 (MQ=255) aC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCAtttt > 2:252420/1‑151 (MQ=255) gtgATCTGTTTTTTTTTA‑CACTTTTTG‑GAGAAGAAAAAAAAAACCCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCttt < 1:1221498/148‑1 (MQ=255) tgATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGGCCTAAGATTTTTTGCTTAAAGAATTTTCAGGAGTTGTAGGCATTTTaatttgt > 2:586412/1‑142 (MQ=255) tCAGGTTTTTTTTA‑CACCTTTTG‑AAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGc < 2:839729/150‑1 (MQ=255) tCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCCGGCATTTTACCTTTTGCCGc > 2:878486/1‑150 (MQ=255) cAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTTGCTTAAAAATTATTCAGCAGTTGCAGGGATTTTACCTTTTGCCGCTg > 1:1170973/1‑151 (MQ=255) aGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTgg > 2:89759/1‑151 (MQ=255) gCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTTCCGCTgg > 1:644022/1‑149 (MQ=255) gCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGCTTTAAGGTTTTTTGCTTCAAGCTTATTCAGCAGTTGAAGGCATTTTACCATTTGcc > 1:94287/1‑144 (MQ=255) tttttttA‑CAACGTTGT‑GAAAAAAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTGCCTTTTGCCGCTGGACg < 1:785852/150‑1 (MQ=255) ttttttaA‑CAACTTTTG‑AAAAAGAGAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGc < 1:161745/144‑1 (MQ=255) ttttttA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGtt > 2:363741/1‑151 (MQ=255) ttttttA‑CAACTGTTT‑GAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGt < 1:599092/150‑1 (MQ=255) tttttC‑CAACTTTTT‑GAAAAAAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGtt < 2:1178703/150‑1 (MQ=255) tttttA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGtt > 2:942611/1‑150 (MQ=255) ttA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGt > 2:1235310/1‑151 (MQ=255) aa‑CAATTGTTG‑GAAAAAAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGt < 1:46253/149‑1 (MQ=255) a‑CAACTGTTT‑GAGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTc < 2:602020/150‑1 (MQ=255) aaaaCTGTTA‑GAGAAGAAAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGt < 2:39647/147‑1 (MQ=255) aattGTTA‑GAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTc < 1:557695/145‑1 (MQ=255) tGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTTCCGCTGGACGTTCTGTCAGACg > 1:7764/1‑150 (MQ=255) gTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGc > 1:1172729/1‑150 (MQ=255) ttggagaagaaaaAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACg < 1:1052036/145‑1 (MQ=255) t‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTtct > 2:212679/1‑151 (MQ=255) agaagagaaAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTTGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTTCCGCTGGACGTTCTGTCAGACGCTtctc > 1:574704/1‑150 (MQ=255) aaaagaaaaAAAAAACCCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGAc < 1:160811/141‑1 (MQ=255) aagaaaaaagaaaaCCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTCaaa < 1:169117/151‑1 (MQ=255) gagaaAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTTGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTCaaaa > 2:341059/1‑150 (MQ=255) | CGACATTTTACGCATATCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGC‑AACTCGGGTGATTTAC‑GTTAGTGGTGATCAGGCTTTTTTTA‑CAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTCAAAA > NC_000913/1824908‑1825203 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |