Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,743,880 IS1 (–) +9 bp coding (424‑432/1374 nt) mdtK → multidrug efflux system transporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 258675NA (NA)42 (0.850) 36/298 0.7 100% noncoding (1/768 nt) IS1 repeat region
?NC_000913 1743880 = 0 (0.000)coding (424/1374 nt) mdtK multidrug efflux system transporter
* ? NC_000913 = 17438880 (0.000)46 (0.940) 43/298 0.3 100% coding (432/1374 nt) mdtK multidrug efflux system transporter
?NC_000913 1978503 = NA (NA)noncoding (768/768 nt) IS1 repeat region

CAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/258526‑258675
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGAGCTCGGTGGC  >  NC_000913/1743880‑1744026
                                                                                                                                                                                                                                                                                                         
CAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCC                                                                                                                                                    <  2:601507/151‑1
 AGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCT                                                                                                                                                   >  2:604924/1‑151
    GATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTGTT                                                                                                                                                <  1:478012/151‑1
       AGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTGTTCT                                                                                                                                              <  2:621436/150‑1
               TGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTG                                                                                                                                     >  2:739604/1‑151
                    GGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGT                                                                                                                                >  1:695055/1‑151
                                   GTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGTAGCCCCTCAAAATCACCATCATTCACTAAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGT                                                                                                                 <  2:559296/151‑1
                                       CGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGG                                                                                                             >  1:153696/1‑151
                                         CACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCA                                                                                                           <  2:732791/151‑1
                                                     AGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCG                                                                                               <  1:466676/151‑1
                                                      GTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGG                                                                                              <  2:163131/151‑1
                                                          CTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTAT                                                                                          >  1:256182/1‑151
                                                               CAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGCAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGCGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTA                                                                                      >  2:18073/1‑150
                                                                    GGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGC                                                                                <  2:618303/151‑1
                                                                      GACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTT                                                                              <  2:64349/151‑1
                                                                      GACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTT                                                                              >  1:481896/1‑151
                                                                      GACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTT                                                                              <  1:57073/151‑1
                                                                           CTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCG                                                                         >  1:605067/1‑151
                                                                             GATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGG                                                                        <  1:159181/150‑1
                                                                                     CAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGG                                                                >  2:26122/1‑150
                                                                                        AAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGA                                                             <  1:515855/150‑1
                                                                                           CCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACAT                                                         <  1:674022/151‑1
                                                                                            CACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATC                                                        >  1:408403/1‑151
                                                                                            CACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATC                                                        >  2:517694/1‑151
                                                                                               TGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCG                                                     >  1:591324/1‑151
                                                                                                  AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTGTTCATCCAGGTTGCCCGTAACCAGTGTGAAGGGCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCG                                                     <  2:291591/148‑1
                                                                                                    CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAA                                                <  1:161911/151‑1
                                                                                                         CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATA                                           <  2:745108/151‑1
                                                                                                         CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATA                                           <  1:199843/151‑1
                                                                                                         CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTAT                                            >  2:35644/1‑150
                                                                                                         CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTAT                                            >  1:712415/1‑150
                                                                                                          AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATAT                                          >  1:481169/1‑151
                                                                                                           AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATC                                         <  2:591321/151‑1
                                                                                                            AAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCT                                        >  2:621665/1‑151
                                                                                                                     CATGCACTAAATCAGTAAGTTGGCAGCATCGCCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATG                               <  2:59260/151‑1
                                                                                                                           CTAAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCAT                          <  1:332982/150‑1
                                                                                                                             AAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGTCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTC                       <  2:481893/151‑1
                                                                                                                             AAATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTC                       <  1:260364/151‑1
                                                                                                                              AATCAGTAAGTTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCG                      >  1:714633/1‑151
                                                                                                                                        TTGGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGGAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCT              >  2:282074/1‑149
                                                                                                                                          GGCAGCATCACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGAGC          <  1:417847/151‑1
                                                                                                                                                  CACCCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGAGCTCGGTGGC  >  1:736622/1‑151
                                                                                                                                                                                                                                                                                                         
CAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/258526‑258675
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGAGCTCGGTGGC  >  NC_000913/1743880‑1744026

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.