Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,743,657 | 0 | A | C | 43.1% | 77.2 / 16.1 | 51 | T309P (ACC→CCC) | yiaK | 2,3‑diketo‑L‑gulonate reductase, NADH‑dependent |
Reads supporting (aligned to +/- strand): ref base A (22/7); new base C (0/22); total (22/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.06e-08 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TTCACAAATTTTTATTGCCATTGAAGTGGACAAGCTTATCGACGGTCCCACCCGCGATGCCAAGCTGCAACGCATCATGGATTACGTTACTAGTGCCGAGCGTGCTGACGAAAATCAGGCCATT‑CGCTTACCCGGCCATGAA‑TTTACTACCCTGCTGGCCGAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGCGTTATGAGGAGATAAGTCATGATTTTTGGACATATCGCGCAGCCCAATCCGTGCCGTTTGCCCGCCGCCATTGAAAAGGCGCT > NC_000913/3743509‑3743807 | ttCACAAATTTTTATTGCCATTGAAGTGGACAAGCTTATCGACGGTCCCACCCGCGATGCCAAGCTGCAACGCATCATGGATTACGTTACTAGTGCCGAGCGTGCTGACGAAAATCAGGCCATT‑CGCTTACCCGGCCATGAA‑TTtactac < 2:688013/150‑1 (MQ=255) ttCACAAATTTTTATTGCCATTGAAGTGGACAAGCTTATCGACGGTCCCACCCGCGATGCCAAGCTGCAACGCATCATGGATTACGTTACTAGTGCCGAGCGTGCTGACGAAAATCAGGCCATT‑CGCTTACCCGGCCATGAA‑TTtactac < 1:730469/150‑1 (MQ=255) acaAATTTTTATTGCCATTGAAGTGGACAAGCTTATCGACGGTCCCACCCGCGATGCCAAGCTGCAACGCATCATGGATTACGTTACTAGTGCCGAGCGTGCTGACGAAAATCAGGCCATT‑CGCTTACCCGGCCATGAA‑TTTACTACCctg > 2:15067/1‑151 (MQ=255) aaTTTTTATTGCCATTGAAGTGGACAAGCTTATCGACGGTCCCACCCGCGATGCCAAGCTGCAACGCATCATGGATTACGTTACTAGTGCCGAGCGTGCTGACGAAAATCAGGCCATT‑CGCTTACCCGGCCATGAA‑TTTACTACCctgctg < 1:59383/151‑1 (MQ=255) ttttATTGCCATTGAAGTGGACAAGCTTATCGACGGTCCCACCCGCGATGCCAAGCTGCAACGCATCATGGATTACGTTACTAGTGCCGAGCGTGCTGACGAAAATCAGGCCATT‑CGCTTACCCGGCCATGAA‑TTTACTACCCTGCTGGc < 1:722801/150‑1 (MQ=255) ttATTGCCATTGAAGTGGACAAGCTTATCGACGGTCCCACCCGCGATGCCAAGCTGCAACGCATCATGGATTACGTTACTAGTGCCGAGCGTGCTGACGAAAATCAGGCCATT‑CGCTTACCCGGCCATGAA‑TTTACTACCCTGCTGGCCg < 2:710649/150‑1 (MQ=255) tATTGCCATTGAAGTGGACAAGCTTATCGACGGTCCCACCCGCGATGCCAAGCTGCAACGCATCATGGATTACGTTACTAGTGCCGAGCGTGCTGACGAAAATCAGGCCATT‑CGCTTACCCGGCCATGAA‑TTTACTACCCTGCTGGCCGa < 1:686283/150‑1 (MQ=255) ttGCCATTGAAGTGGACAAGCTTATCGACGGTCCCACCCGCGATGCCAAGCTGCAACGCATCATGGATTACGTTACTAGTGCCGAGCGTGCTGACGAAAATCAGGCCATT‑CGCTTACCCGGCCATGAA‑TTTACTACCCTGCTGGCCGaaa > 2:462812/1‑150 (MQ=255) tGCCATTGAAGTGGACAAGCTTATCGACGGTCCCACCCGCGATGCCAAGCTGCAACGCATCATGGATTACGTTACTAGTGCCGAGCGTGCTGACGAAAATCAGGCCATT‑CGCTTACCCGGCCATGAA‑TTTACTACCCTGCTGGCCGAAAAc > 1:431363/1‑151 (MQ=255) gCCATTGAAGTGGACAAGCTTATCGACGGTCCCACCCGCGATGCCAAGCTGCAACGCATCATGGATTACGTTACTAGTGCCGAGCGTGCTGACGAAAATCAGGCCATT‑CGCTTACCCGGCCATGAA‑TTTACTACCCTGCTGGCCGAAAAcc < 2:101213/151‑1 (MQ=255) cATTGAAGTGGACAAGCTTATCGACGGTCCCACCCGCGATGCCAAGCTGCAACGCATCATGGATTACGTTACTAGTGCCGAGCGTGCTGACGAAAATCAGGCCATT‑CGCTTACCCGGCCATGAA‑TTTACTACCCTGCTGGCCGAAAAccgc > 2:79356/1‑151 (MQ=255) aTTGAAGTGGTCAAGATTATCGATGGTCCCACGCGCGATGCGAAGCTGCAAAGCATCATGGATGACGTTACTAGTGCCGAGCGTGCTGACGAAAATCAGGCTGTT‑CGCATAACAGGCGATGAA‑GATACTACCCTGATGGCGGAAAAccgc > 2:214432/1‑150 (MQ=255) aTTGAAGTGGACAAGCTTATCGACGGTCCCACCCGCGATGCCAAGCTGCAACGCATCATGGATTACGTTACTAGTGCCGAGCGTGCTGACGAAAATCAGGCCATT‑CGCTTACCCGGCCATGAA‑TTTACTACCCTGCTGGCCGAAAAccgcc > 2:380847/1‑151 (MQ=255) gAAGTGGACAAGCTTATCGACGGTCCCACCCGCGATGCCAAGCTGCAACGCATCATGGATTACGTTACTAGTGCCGAGCGTGCTGACGAAAATCAGGCCATT‑CGCTTACCCGGCCATGAA‑TTTACTACCCTGCTGGCCGAAAACCGCCGt > 2:342300/1‑150 (MQ=255) ttACCGACGTCCCCCCCCGCGACGCAAGGCTAAAACGCATCATGGTTTACTTTCCAAGTCCGGGGCGTGCGGACAAAAACCAGGCCATC‑CCCTCCCCCGGCAATAAA‑TTTCCTCCCCTGCTGCCCAAAAACCGCCGTAACGGCATCACt < 1:335650/149‑1 (MQ=255) tCGACGGTCCCACCCGCGATGCCAAGCTGCAACGCATCATGGATTACGTTACTAGTGCCGAGCGTGCTGACGAAAATCAGGCCATT‑CGCTTACCCGGCCATGAA‑TTTACTACCCTGCTGGCCGAAAACCGCCGTAACGGCATCACTGTtg > 2:188302/1‑150 (MQ=255) ggcccccccCGCGATGCAAGGCGGAACCGCATCATGAATTCCTTTCCTAGGGCGGGGGGTGCTGACAAAAACCGGGCCTTC‑CGCTCCCCCGGCAATAAT‑TTTCCTCCCCTGCTGGCCAAAAACCGCCGTAACGGCATCACTGTtgatga < 1:309819/146‑1 (MQ=255) ccccccCGCGATGCCAAGCTCCAACGCATCGTGTTTTCCTTTATTAGGGCCGGGCGTCTTGAAAAAAACCAGCCCATC‑CCCTTCCCCGCCCATAAT‑TTTCCTCCCCTGCGGGCCAAAAACCGCCGTAACGGCATCACTGTTGATGACAg < 1:83327/149‑1 (MQ=255) ccccccCGCGATGCAAACCTGCAACGCATCAGGGATTACTTTACTAGGGCGGGGCGTGCTGAAAAAAACCAGGCCATT‑CGCTTCCCCGGCCATAAA‑TTTACTCCCCTGCGGGCGAAAAACCGCCGTAACGGCATCACTGTTGATGACAGCg < 1:233252/151‑1 (MQ=255) ccccccCGCGAGGCAAAGCGGAAACGCATCATGGTTTACTTTACTAGGGCGGGGCGTGCTAAC‑AAAAACCGGCCTTTCCGCTCCCCCGCCAATAAT‑TTTACTCCCCGCCGGGCGGAAAACCGCCGTAACGGCATCACTGTTGATGACAGc < 2:225842/150‑1 (MQ=255) cccccGCGATGCCAAGCTGAAACGCATCTGGGTTTACGTTATGAGTGCCGGGGGTGCTGAAAAAAACCGGCCCATC‑CGCTTACCCGGCCATAAT‑TTTACTACCCTGGTGGCAGAAAACCGCCGTAACGGCATCACTGTTGATGACAGCgtg < 2:579191/149‑1 (MQ=255) ccccGCGATGCCAAGCTAAAACGCATCATGGATTTCTTTACTAGGGCGGGGGGTGCTGAAAAAAACCGGCCCATT‑CGCTTCCCCGCCCATAAA‑TTTACTCCCCTGCGGGCGAAAAACCGCCGTAACGGCATCACTGTTGATGACAGCgtgt < 1:67371/150‑1 (MQ=255) gcgATGCCAAGCTGCAACGCATCATGGATTACGTTACTAGTGCCGAGCGTGCTGACGAAAATCAGGCCATT‑CGCTTACCCGGCCATGAA‑TTTACTACCCTGCTGGCCGAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGc > 1:130379/1‑151 (MQ=255) tGCCAAGCTGCAACGCATCATGGATTACGTTACTAGTGCCGAGCGTGCTGACGAAAATCAGGCCATT‑CGCTTACCCGGCCATGAA‑TTTACTACCCTGCTGGCCGAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCaa > 1:235470/1‑150 (MQ=255) ccAAGCTGCAACGCATCATGGATTACGTTACTAGTGCCGAGCGTGCTGACGAAAATCAGGCCATT‑CGCTTACCCGGCCATGAA‑TTTACTACCCTGCTGGCCGAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAAt > 1:194137/1‑151 (MQ=255) cAAGCTGCAACGCATCATGGATTACGTTACTAGTGCCGAGCGTGCTGACGAAAATCAGGCCATT‑CGCTTACCCGGCCATGAA‑TTTACTACCCTGCTGGCCGAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATc > 1:387520/1‑151 (MQ=255) tGCAACGCATCATGGATTACGTTACTAGTGCCGAGCGTGCTGACGAAAATCAGGCCATT‑CGCTTACCCGGCCATGAA‑TTTACTACCCTGCTGGCCGAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGc > 1:437182/1‑151 (MQ=255) accccgccatGTATTCTGTTACTGGGCCGGAGCGTCGTAACAAAAACCGGGCCTTT‑CCCTTCCCCGGCCATGAT‑TTCATTCCCCCGGTGGCGAAACCCCGCCGTAACGGCATCACTGTTGATGACAGCGTGTggg < 2:627618/128‑1 (MQ=255) accccataatGTATTACGTTATTGGTGCGGGGGGTCCTGAAAAAAACCGGCCCTTC‑CGCTTCCCCGGCCTTAAT‑TTTCCCCCCCTGCGGGCCAAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCa < 1:342302/141‑1 (MQ=255) aCGCATCATGGATTGCTTTACGGGGCCCGAGCGTCCGGACAAAAATCAGGCCTTC‑CGCTTACCCGCCAATAAT‑TTTACTACCCTGCGGGCAAAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGCGTTa < 2:481028/151‑1 (MQ=255) tgtaTTACTTTACTAGTGCGGGGCGTGCTGACAAAAATCAGGCCATT‑CGCTTCCCCGGCAATAAA‑TTTCCTCCCCTGCTGGCCAAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGCGTTATgagg < 1:25567/145‑1 (MQ=255) ggATTACTTTTCTAGTGCGGGGGGTGCTGACAAAATTCGGGCCTTC‑CCCTTCCCCGGCAATGAT‑TTTCCCCCCCTGCTGGCGGAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGCGTTATGAGgaga < 2:686554/150‑1 (MQ=255) aTTACGTTACTAGTGCCGAGCGTGCTGACGAAAATCAGGCCATT‑CGCTTACCCGGCCATGAA‑TTTACTACCCTGCTGGCCGAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGCGTTATGAGGAGATa > 1:487443/1‑150 (MQ=255) ttactttactAGGGCCGAGCGTGCTGACAAAACACA‑GCCCTT‑CCCCTACCCCGCCCAGAATTTTCCTCCCCGGCTGGCAAAAACCCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGCGTTATGAGGAGATaa < 1:177616/150‑1 (MQ=255) cGTTACTAGTGCCGAGCGTGCTGACGAAAATCAGGCCATT‑CGCTTACCCGGCCATGAA‑TTTACTACCCTGCTGGCCGAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGCGTTATGAGGAGATAAGTc > 1:126402/1‑150 (MQ=255) tccTAGTGCCGGGCGTGCTGACAAAAACCAGCCCATT‑CCCTTCCCCGGCCATAAT‑TTTACTCCCCTGCGGGCCAAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGCGTTATGAGGAGATAAGTCAt < 1:386012/147‑1 (MQ=255) gAGCGTGCTGACGAAAATCAGGCCATT‑CGCTTACCCGGCCATGAA‑TTTACTACCCTGCTGGCCGAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGCGTTATGAGGAGATAAGTCATGATTTTTGGAc > 1:627869/1‑150 (MQ=255) gAGCGTGCTGACGAAAATCAGGCCATT‑CGCTTACCCGGCCATGAA‑TTTACTACCCTGCTGGCCGAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGCGTTATGAGGAGATAAGTCATGATTTTTGGAc > 1:368422/1‑150 (MQ=255) aGCGTGCTGACGAAAATCAGGCCATT‑CGCTTACCCGGCCATGAA‑TTTACTACCCTGCTGGCCGAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGCGTTATGAGGAGATAAGTCATGATTTTTGGACat > 1:185348/1‑151 (MQ=255) aaaaaaaTCAGCCCTTT‑CCCTTCCCCGGCCATAAT‑TTTACTCCCCTGCTGGCGAAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGCGTTATGAGGAGATAAGTCATGATTTTTGGACATATCGCGCa < 1:637410/147‑1 (MQ=255) gAAAATCAGGCCATT‑CGCTTACCCGGCCATGAA‑TTTACTACCCTGCTGGCCGAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGCGTTATGAGGAGATAAGTCATGATTTTTGGACATATCGCGCAGcc > 1:656929/1‑151 (MQ=255) aaaaCCAGCCCTTT‑CGTTTCCCCGGCCATGAT‑TTTCCTCCCCTGCTGGCCAAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGCGTTATGAGGAGATAAGTCATGATTTTTGGACATATCGCGCAGcc < 2:575130/150‑1 (MQ=255) tCAGGCCATT‑CGCTTACCCGGCCATGAA‑TTTACTACCCTGCTGGCCGAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGCGTTATGAGGAGATAAGTCATGATTTTTGGACATATCGCGCAGCCCAATc > 2:58988/1‑151 (MQ=255) gcccATT‑CGCTCCCCCGGCAATAAA‑TTTACTCCCCGGCGGCCAAAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGCGTTATGAGGAGATAAGTCATGATTTTTGGACATATCGCGCAGCCCAAt < 1:607753/145‑1 (MQ=255) ccttccGCTTCCCGGGCAATAAT‑TTTACTCCCCGGCTGGCCAAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGCGTTATGAGGAGATAAGTCATGATTTTTGGACATATCGCGCAGCCCAATCCGTGc < 2:433341/146‑1 (MQ=255) cTTCCCGGGCAATAAA‑TTTCCTCCCCTGCTGGCCAAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGCGTTATGAGGAGATAAGTCATGATTTTTGGACATATCGCGCAGCCCAATCCGTGCCGTTTg < 1:567466/150‑1 (MQ=255) cTTACCCGGCCATGAA‑TTTACTACCCTGCTGGCCGAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGCGTTATGAGGAGATAAGTCATGATTTTTGGACATATCGCGCAGCCCAATCCGTGCCGTTTGc > 2:235323/1‑151 (MQ=255) cccGGCCTTGTA‑TTTACCCCCCTGCTGCCCGAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGCGTTATGAGGAGATAAGTCATGATTTTTGGACATATCGCGCAGCCCAATCCGTGCCGTTTGc < 1:690174/147‑1 (MQ=255) cccGGCAATGAA‑TTTCCTCCCCTGCTGGCGAAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGCGTTATGAGGAGATAAGTCATGATTTTTGGACATATCGCGCAGCCCAATCCGTGCCGTTTGccc < 1:528915/149‑1 (MQ=255) cccGGCAATAAT‑TTTCCCCCCCTGCTGGCAAAAAGCCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGCGTTATGAGGAGATAAGTCATGATTTTTGGACATATCGCGCAGCCCAATCCGTGCCGttt < 2:711293/145‑1 (MQ=255) cccGCCAATAAA‑TTTCCTCCCCGGGTGGCAAAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGCGTTATGAGGAGATAAGTCATGATTTTTGGACATATCGCGCAGCCCAATCCGTGCCGttt < 2:720910/145‑1 (MQ=255) ccATGAA‑TTTACTACCCTGCTGGCCGAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGCGTTATGAGGAGATAAGTCATGATTTTTGGACATATCGCGCAGCCCAATCCGTGCCGTTTGCCCgccgcc > 1:722558/1‑150 (MQ=255) agaattttCCTCCCCGGGTGGCCGAAACCCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGCGTTATGAGGAGATAAGTCATGATTTTTGGACATATCGCGCAGCCCAATCCGTGCCGTTTGCCCgccgcc < 1:354791/143‑1 (MQ=255) tactacCCTGCTGGCCGAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGCGTTATGAGGAGATAAGTCATGATTTTTGGACATATCGCGCAGCCCAATCCGTGCCGTTTGCCCGCCGCCATTGAAAAgg > 1:603495/1‑151 (MQ=255) ctacCCTGCTGGCCGAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGCGTTATGAGGAGATAAGTCATGATTTTTGGACATATCGCGCAGCCCAATCCGTGCCGTTTGCCCGCCGCCATTGAAAAGgcg > 2:165727/1‑151 (MQ=255) ctacCCTGCTGGCCGAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGCGTTATGAGGAGATAAGTCATGATTTTTGGACATATCGCGCAGCCCAATCCGTGCCGTTTGCCCGCCGCCATTGAAAAGgcg > 1:490712/1‑151 (MQ=255) acCCTGCTGGCCGAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGCGTTATGAGGAGATAAGTCATGATTTTTGGACATATCGCGCAGCCCAATCCGTGCCGTTTGCCCGCCGCCATTGAAAAGGCGCt > 2:555149/1‑151 (MQ=255) | TTCACAAATTTTTATTGCCATTGAAGTGGACAAGCTTATCGACGGTCCCACCCGCGATGCCAAGCTGCAACGCATCATGGATTACGTTACTAGTGCCGAGCGTGCTGACGAAAATCAGGCCATT‑CGCTTACCCGGCCATGAA‑TTTACTACCCTGCTGGCCGAAAACCGCCGTAACGGCATCACTGTTGATGACAGCGTGTGGGCCAAAATCCAGGCGTTATGAGGAGATAAGTCATGATTTTTGGACATATCGCGCAGCCCAATCCGTGCCGTTTGCCCGCCGCCATTGAAAAGGCGCT > NC_000913/3743509‑3743807 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |