| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,001,918 | 0 | A | C | 40.9% | 175.1 / 12.9 | 89 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| Reads supporting (aligned to +/- strand): ref base A (46/6); new base C (0/36); total (46/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.49e-19 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAG > NC_000913/2001771‑2002064 | cGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAAccc < 1:979035/151‑1 (MQ=255) ggTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAAcccc > 1:102878/1‑151 (MQ=255) gTATAGAGTGAATTCACGATAAACAGCCCTGTGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCccg < 2:1254729/151‑1 (MQ=255) gTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCccg < 2:44640/151‑1 (MQ=255) tataGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCccgc > 2:328153/1‑151 (MQ=255) taGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCccgccg > 1:502404/1‑151 (MQ=255) taGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCccgccg > 2:507039/1‑151 (MQ=255) gAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCg > 2:1285144/1‑151 (MQ=255) aaTTCACGATAAACAGCCCTGCTTTATAGGAGTTATCGGCATGTTTACCCTTTTCGGCGGGGTTTTA‑AACCGGGAGATTAGGGGGTGAAAGGAGGGT‑TTATTGGGGGG‑TT‑ACAGG‑TAAATCCC‑G‑GGAAAAAAAAACCCCCGCCGGTGGCg < 2:1188351/150‑1 (MQ=255) cGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGGTTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGTAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGCAGc > 1:310561/1‑151 (MQ=255) tAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACg > 1:440275/1‑151 (MQ=255) tAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACg > 2:134519/1‑151 (MQ=255) aCAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGtt > 2:450800/1‑150 (MQ=255) cccTGTTTTATATGATTTATCGGCATGATTTTCCGTTTCTGCAGGTTTTTT‑AATGGGACGATTGGTGGGTAAAATGGGGGG‑TTATTGGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGa < 1:870069/151‑1 (MQ=255) cccTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTg > 2:688959/1‑150 (MQ=255) tGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACa > 1:612753/1‑150 (MQ=255) gtgTTATAGGAGTTATGGGAATGTTTATCGGTTTCTGCGGGGTTTTA‑AATCGGACAATGGGGGGGTAAAATGGGGGG‑TTATTGGGGGG‑TT‑ACAGG‑TAAATCCA‑A‑GGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACa < 2:1104516/147‑1 (MQ=255) cGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACaaa > 2:447896/1‑150 (MQ=255) gTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAAtt > 1:215459/1‑151 (MQ=255) ttATATGGGTTATCGGCATTTTTACCCGTTTCTGCGGGTTTTTA‑AAGCGGACGATTAGGGGGTGAAATGAGGGG‑TTTTTTGGGGG‑TT‑ACAGG‑AAAATCCC‑G‑GGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAAt < 1:169850/149‑1 (MQ=255) ttATATGATTTATCGGCATGATTATCCGTTTCTGCGGGTTTTTT‑AAGCGGACGATTGGTGGGTAAAAGGGGGGT‑TTTTTGGGGGG‑TT‑ACAGG‑AAAATTCC‑A‑GGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACaa < 1:757105/147‑1 (MQ=255) atatGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTgcg > 1:228892/1‑151 (MQ=255) ttATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATg > 2:989194/1‑151 (MQ=255) aTCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGt > 2:831802/1‑150 (MQ=255) aTCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGCGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACGGG‑TAAAATCC‑A‑GGCAGAAAAAAACCCCGCCGGGGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGt > 2:491507/1‑150 (MQ=255) ggCATGATTATCCGTTTCTGCGGGTTTTTT‑AATCGGACGTTTGGGGGGTGAAAGGGGGGG‑TTTTTGGGGGG‑TT‑AAAGG‑TAAATCCC‑A‑GGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTg < 2:141528/149‑1 (MQ=255) ggCATGATTATCCGTTTCTGCGGGGTTTTA‑AATCGGACGTTTAGGGGGTGAAATGGGGGT‑TTATTGGGGGT‑TT‑ACAGG‑AAAATCCC‑A‑GGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTg < 1:127594/149‑1 (MQ=255) gCATGATTATCCGTTTCTGCAGGGATTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCg > 2:876088/1‑151 (MQ=255) aTTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgc > 1:470422/1‑151 (MQ=255) aTTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgc > 2:837343/1‑151 (MQ=255) ttATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgcg > 2:411975/1‑151 (MQ=255) tttcgtttgcTGCAGGTTTTTA‑AATGGAACGATTGGGGGGAAAAATGAGGGG‑TT‑TTTGGGGG‑TTAAAAGG‑TAATTCCA‑A‑GGCAAAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgcg < 2:1270499/141‑1 (MQ=255) aTCCTTTTCTGCGGGGTTTTT‑AATCGGACGATTAGTGGGTAAAATGAGGGT‑TTTTTTGGGGT‑TT‑ACAGG‑AAAATTCC‑A‑GGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgcg < 1:735571/149‑1 (MQ=255) aTCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgcggc > 1:805263/1‑151 (MQ=255) tttCTGCAGGTTTTTT‑AATCGGACGATTAGGGGGTGAAATGAGGGG‑TTTTTTGGGGT‑TT‑ACAGT‑TAAATCCC‑A‑GGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGt < 2:740407/148‑1 (MQ=255) tttCTGCAGGGTTTTT‑AACCGGACTATTAGTGGGTGAAAGGAGGGG‑TTATTGGGGGG‑TT‑CCAGG‑TAAATCCC‑A‑GGAAAAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTaa < 1:556902/150‑1 (MQ=255) ttCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAAc > 1:1031895/1‑151 (MQ=255) ttCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAAc > 2:309519/1‑151 (MQ=255) tGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGc > 1:843103/1‑150 (MQ=255) gcgggTTTTTAAACCGGACGATTAGGGGGT‑AAAAGGGGGG‑TTTTTTGGGGGTTT‑ACAGT‑TAAATTCC‑A‑GGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGc < 1:757525/147‑1 (MQ=255) gtttttt‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATc > 1:232555/3‑151 (MQ=255) tttt‑AGTCGGAAG‑TTGGGGGGGGAAAGGGGGGGTTTAGGTGGGGG‑TA‑ACGGG‑TAAATTCA‑A‑GACAAAAAAAACCGCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATcc < 2:1093375/149‑1 (MQ=19) tttt‑AATCGGGCGTTAGGTGGGTGAAAGGGGGTT‑TTATTGGGGGT‑TC‑AAAGG‑TCAATACC‑A‑GGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATcgg < 2:1343987/150‑3 (MQ=255) tt‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGcc > 1:1191731/1‑151 (MQ=255) t‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGGGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGcc > 2:29394/1‑150 (MQ=255) acggggACGATTAGTGGGTAAAATGGGGGG‑TTATTGGGGGT‑TA‑ACAGG‑TAAATTCC‑A‑GGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCt < 1:643534/146‑1 (MQ=38) aaTCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCt > 1:1160895/1‑150 (MQ=255) tCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTAc > 1:278537/1‑150 (MQ=255) ggaggaTTGGTGGGTAAAATG‑GGGG‑TTTTTTGGGGGTTT‑ACAGG‑TAAATCCA‑A‑GCCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACaaa < 1:749505/151‑1 (MQ=25) ggaggaTTGGGGGGT‑AAAAGGGGGG‑TTTTTTGGGGGTTT‑ACAGG‑TAAATCCC‑A‑GGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACaaa < 1:507047/151‑1 (MQ=25) ggATGATTGGTGGGTGAAAGGAGGGG‑TTATTTGGGGT‑TT‑AAAGG‑TAAATCCC‑G‑GGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACa < 2:843021/149‑1 (MQ=37) ttggggggaaaaaTGGGGGG‑TTATTGGGGGT‑TT‑ACAGG‑TAAATTCC‑A‑GGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACaaaaa < 1:737904/137‑1 (MQ=37) ttAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGA‑TAAATCCC‑A‑GAAAGAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAtgt < 1:497161/150‑1 (MQ=255) ttAGGGGTTAAAATGGGGGT‑TTATTTGGGGG‑TT‑A‑AAG‑TAAATTCCAA‑GGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAtg < 2:1087075/149‑1 (MQ=25) ttAGGGGGTGAAATG‑GGGG‑TTTTTTGGGGGTTT‑ACAGG‑TAAATTCC‑A‑GGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAtg < 1:899046/149‑1 (MQ=37) agggggTAAAATG‑GGGG‑TTTATTGGGGG‑TT‑ACAGGATAAATCCC‑A‑GCAAAAAAAACTCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGc < 1:215052/147‑1 (MQ=25) gggggTAAAAGGGGGGT‑TTATTGGGGGG‑TT‑ACAGG‑AAAATCCC‑A‑GGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAtgtg < 1:1281329/146‑1 (MQ=37) gTGGGTGAAGTGGGGGT‑TTTTTTGGGGT‑TT‑ATGGT‑TAAATTCC‑A‑GGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAtg < 1:233579/146‑1 (MQ=37) gggTGAAAGGAGGGG‑TTATTGGGGGG‑TT‑ACAGT‑AAAATCCC‑A‑GGCAAAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAAt < 1:505280/151‑1 (MQ=38) gggTGAAA‑GGGGGG‑TTTTTTGGGGG‑TTAAAAGA‑AAAATCCC‑A‑GGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGc < 2:1038008/147‑1 (MQ=25) aaaggggggt‑TTATTGGGGGG‑TT‑ACAGT‑AAAATTCC‑A‑GGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAAtt < 2:1145608/141‑1 (MQ=37) aaaTGAGGGG‑TTTTTGGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGAAGAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAAt < 2:187806/151‑1 (MQ=255) aTGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATa > 2:1076181/1‑150 (MQ=255) tGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATaa > 2:677325/1‑150 (MQ=255) ggggggt‑TTTTTTGGGGT‑TT‑CCAGG‑TAATTCCC‑A‑GAAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATaa < 1:282352/147‑1 (MQ=25) gggggt‑TTATTGGGGGG‑TT‑ACAGG‑AAAATTCC‑A‑GGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATaa < 1:271827/147‑1 (MQ=37) gggg‑TTATTGGGGGT‑TT‑ACAGG‑AAAATCCC‑G‑GGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTg < 1:1100719/151‑1 (MQ=25) ggg‑TTATTGGGGGG‑TT‑ACAGG‑TAAATCCC‑A‑GGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGc < 1:1104051/151‑1 (MQ=255) ttttttGGGGT‑TT‑ACGGT‑TAATTTCC‑A‑GGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCa < 2:660230/146‑1 (MQ=25) aTTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTc > 1:1307862/1‑151 (MQ=255) tgggggg‑TT‑AAAGT‑AAAATCCC‑A‑GGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTc < 1:55576/147‑1 (MQ=25) tGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCaa > 1:1076015/1‑150 (MQ=255) tGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCaa > 1:568289/1‑150 (MQ=255) tGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAAc > 2:511576/1‑151 (MQ=255) gggg‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACtt > 1:1302097/1‑151 (MQ=255) ggg‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTg > 2:313964/1‑151 (MQ=255) gg‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGt > 1:903697/1‑151 (MQ=255) aaaGG‑TAAATCCC‑G‑GTAAAAAAAACCCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGc < 2:1031874/149‑1 (MQ=25) aCAGT‑TAAATTCC‑A‑GGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAg < 1:825193/149‑1 (MQ=255) cAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGcc > 2:664518/1‑151 (MQ=255) aGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCt > 2:738138/1‑151 (MQ=255) gg‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTg > 2:1137877/1‑151 (MQ=255) g‑TAAATTCC‑AGGGCAGAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACtt < 2:1007522/142‑1 (MQ=255) aaaTTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGAt > 1:104399/1‑150 (MQ=255) aaaTCCG‑A‑GGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGt < 2:374425/141‑1 (MQ=255) aaaTCCC‑A‑GGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCt < 1:677606/147‑1 (MQ=255) aTTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATa > 1:1329521/1‑149 (MQ=255) a‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgc > 1:1140032/1‑149 (MQ=255) ggaaaaaaaaacCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcag < 1:1156586/145‑1 (MQ=255) ggaaaaaaaaacCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgca < 1:1220139/144‑1 (MQ=255) aGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcgc > 1:227536/1‑150 (MQ=255) aaaaaaaCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATc > 1:481166/1‑151 (MQ=255) aaaaacCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCa < 1:850215/151‑1 (MQ=255) aaaacCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAg < 2:146682/151‑1 (MQ=255) | CGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGG‑TTATTTGGGGG‑TT‑ACAGG‑TAAATTCC‑A‑GGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAG > NC_000913/2001771‑2002064 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |