New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 925901 = | 54 (0.650) | 13 (0.160) +C |
11/296 | 6.8 | 20.9% | noncoding (71/88 nt) | serW | tRNA‑Ser |
? | NC_000913 | = 1097399 | 45 (0.540) | intergenic (+570/+166) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
Rejected: Coverage evenness skew score above cutoff. |
TCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑GAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAA > NC_000913/925755‑926046 | tCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑g < 2:699433/150‑1 (MQ=255) cACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑Ga < 1:342183/150‑1 (MQ=255) gCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑GAAcccc < 1:434143/151‑1 (MQ=255) gCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑GAAccc < 2:297074/150‑1 (MQ=255) gCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑GAAccc < 1:1281440/150‑1 (MQ=255) ccGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑TGGG‑GGGGGGGG‑TTG‑GAAcccc > 1:767714/1‑151 (MQ=255) cGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGAT‑CA‑GGGGGGGA‑TCG‑GAAcccc > 2:891753/1‑150 (MQ=255) aCAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑GAACCCCCGAt < 2:570026/150‑1 (MQ=255) aCAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑GAACCCCCGAt < 2:452085/150‑1 (MQ=255) aCAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑GAACCCCCGAt < 1:1288649/150‑1 (MQ=255) gCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑GAACCCCCGATACGtt < 1:209053/151‑1 (MQ=255) gCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑GAACCCCCGATACGtt < 1:41571/151‑1 (MQ=255) cAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGG‑TTC‑GAACCCCCGATACGtt > 1:972763/1‑150 (MQ=255) aGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGG‑TTT‑GAACCCCCCGTACggt > 2:138456/1‑147 (MQ=255) aGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑G‑GA‑GGGGGGGG‑GTT‑GAACCCCCGCTACGTTGCCGtat > 1:277098/1‑151 (MQ=255) aaCATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑GAACCCCCGATACGTTGCCGTATACACACTTTCCAg < 2:1144974/150‑1 (MQ=255) aCATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑GAACCCCCGATACGTTGCCGTATACACACTTTCCAGGc < 1:1204145/151‑1 (MQ=255) cATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGG‑TTT‑TCACCCCCCCCCCGGTTGCGTATACACACttttcccg > 1:181912/1‑144 (MQ=21) cATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑GAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCg < 1:1109475/151‑1 (MQ=255) tACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGG‑TTC‑GAACCCCCCCAACGGTGCCGTATTCACCCCTTTCCGGCGTg > 2:634952/1‑151 (MQ=21) tCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGG‑GTT‑GAAACCCCGCTACGTTGCCGGATAAACACTTTCCCAGCGTg > 2:1017019/1‑148 (MQ=21) ccACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑GAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCt < 2:147957/149‑1 (MQ=255) cACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑GAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCt < 2:519549/151‑1 (MQ=255) aCCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGG‑GTT‑GAAACCCCCCTAACTTGTCGCATAAAAACTTTTCAGGCGGGCTcc > 1:1273192/1‑149 (MQ=21) ccGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑GAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCa < 1:21178/151‑1 (MQ=255) ccaTGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑GAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTc < 2:777161/151‑1 (MQ=255) ccaTGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑GAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTc < 2:823514/151‑1 (MQ=255) aTGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGG‑GTT‑GCACCCCCCATACGTTTCCCTATAAACACTTTTCAGGCGGGGTCCCTCAGCCAccccg > 2:610936/1‑147 (MQ=18) ttCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGG‑GTCGGAACCCCCG‑TACGTTGCCGTATATACACATTTCCGGCGGGCTCCTTTAACCACCCGGac > 1:170905/1‑150 (MQ=17) tCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GG‑GGGGGGGG‑TTC‑GAACCCCCCATACGTTGCCGTATACACACTTTTCAGGCGGGCTCCTTCAGCCCCTCGGac > 1:1240109/1‑149 (MQ=17) gCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑GAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCa < 2:1165239/150‑1 (MQ=255) agaTAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGG‑TTT‑GAACCCCCCATACGGTTCCGTATAAACACTTTTCCGGCGTGCTCCTTCCGCCCCCCCGGCACCCCCCCCAAATGtttt > 1:452104/1‑151 (MQ=14) gaTAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑GAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTg < 2:182157/151‑1 (MQ=255) aaTGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑GAACCCCCCATACGTTGCCGTATACACACTTTCCAGGCGGGCTCCTTCAGCCACTCGGACACCCCCCCCAATTGtttt > 2:805847/1‑145 (MQ=255) aTGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGG‑TTT‑GAACCCCCCATAAGGTGCCGTATACACACTTTCCAGGCGGGCTCCCTCCGCCACTCCGGCAACTCCCCCAATTGttttttttcc > 2:716947/1‑144 (MQ=14) cGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑GAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAAc < 2:73029/151‑1 (MQ=255) cGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑GAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAAc < 1:211503/151‑1 (MQ=255) aaaaaaaGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GAGGGGGGGGG‑TTG‑GAACCCCC‑ACACCGTTTCGTATAAAAACCTTTCAGGCGGGGTCCCTCAGCCCACCCGACACCCCCCCCAAATGTTTTTCTTCCcaa > 1:147624/1‑147 (MQ=2) aaaaaGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑GAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCAt < 1:1016073/151‑1 (MQ=255) aaaaaGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑GAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCAt < 1:235618/151‑1 (MQ=255) cTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GT‑GGGGGGGG‑TTT‑GAACCCCCCATACGTTGGCGTTTAAAACCTTTTCAGGCGGGGTCCTTCAGCCCCCCCGCCACCCCCCCCAAATGTTTTTTTTCCAAACCTCATtggtgg > 1:593618/1‑151 (MQ=9) ttCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGAGTTG‑GAACCCCC‑CTACGTTGTCGTATACAAACTTTCCAGGCGGGGCCCTTCAGCCACCCGGGCACCCCACCAAATTGTTTTTCTAACAAACCCCATTGGGGGGAACgggg > 1:212493/1‑151 (MQ=9) gTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGG‑TTC‑GAACCCCCCATACGTTGCCGGATACACACTTTTCCGGCGGGGTCCCTCAGCCACCCCGGCACCCCCCCCAAATTTTTTTCTACCCAACCTCCTTGGGGGGAAAgggggg > 2:1199347/1‑148 (MQ=2) gTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑GAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGgcg < 2:887417/150‑1 (MQ=255) gTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGG‑‑TTC‑GAACCCCCCATACGGTGCCGTATACACACTTTCCAGGCGGGCTCCTTCAGCCACTCGGACACCTCACCAAAATGTTTTGCTACCAAACCCCATGGGGGGCAACgggggg > 2:827748/1‑147 (MQ=17) aCGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑GAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGct < 2:537122/150‑1 (MQ=255) cttcttTAAATATGGCGG‑T‑GA‑GGGGGGGG‑TTT‑GCAACCCCCCTACGTTTGCGTATAAAAACTTTTCAGGCGGGCTCCCTCAGCCCCTCGGGCACCTCCCCAAAATGTTTTTCTAACAAACCCCATGGGGGGGAACGGGGCGCTACtata > 1:174242/1‑149 (MQ=12) cttcttTAAATATGGCGG‑T‑GA‑GGGGGGGG‑TTC‑GAACCCCCCATACGTTTCCGTATACACACTTTCCCGGCGGGCTCCTTCCGCCACCCGGACACCCCACCAAATTGTTTTTCTACCAAACCCCCTGGGGGGCAACGGGGCGctac > 2:592491/1‑145 (MQ=17) ttcttTAAATATGGCGG‑T‑GA‑GGGGGGGA‑TTT‑GGAACCCCCCTACGTTGCAGTAGACACACTTTTCAGGCGTGCTCCTTCAACCACTCGGACACCTCACCCAAATTTTTTGCTAACCAACCTCATTGGAGGCAACGGGGCGCCACTATAggg > 2:563423/1‑151 (MQ=17) aaaTATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑GAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTgg < 1:235172/151‑1 (MQ=255) aaTATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑GAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGa < 1:942468/151‑1 (MQ=255) gCGG‑T‑GA‑GGGGGGGA‑TTC‑GAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTaaaa < 2:32573/151‑1 (MQ=255) gg‑T‑GA‑GGGGGGGA‑TTC‑GAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACg < 2:996468/151‑1 (MQ=255) ggggggA‑TTC‑GAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCa > 1:1056098/1‑149 (MQ=255) ggggA‑TTC‑GAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCaagaa < 2:820363/151‑1 (MQ=255) | TCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGG‑T‑GA‑GGGGGGGA‑TTC‑GAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAA > NC_000913/925755‑926046 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |