New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 925901 =54 (0.650)13 (0.160)
+C
11/296 6.8 20.9% noncoding (71/88 nt) serW tRNA‑Ser
?NC_000913 = 1097399 45 (0.540)intergenic (+570/+166) ycdU/serX putative inner membrane protein/tRNA‑Ser
Rejected: Coverage evenness skew score above cutoff.

TCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAA  >  NC_000913/925755‑926046
                                                                                                                                                      |                                                                                                                                                  
tCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCg                                                                                                                                                <  2:699433/150‑1 (MQ=255)
 cACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa                                                                                                                                               <  1:342183/150‑1 (MQ=255)
     gCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc                                                                                                                                          <  1:434143/151‑1 (MQ=255)
     gCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc                                                                                                                                           <  2:297074/150‑1 (MQ=255)
     gCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc                                                                                                                                           <  1:1281440/150‑1 (MQ=255)
      ccGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGGGGGGGGGGGTTGGAAcccc                                                                                                                                          >  1:767714/1‑151 (MQ=255)
       cGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGATCAGGGGGGGATCGGAAcccc                                                                                                                                          >  2:891753/1‑150 (MQ=255)
          aCAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGAt                                                                                                                                      <  2:570026/150‑1 (MQ=255)
          aCAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGAt                                                                                                                                      <  2:452085/150‑1 (MQ=255)
          aCAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGAt                                                                                                                                      <  1:1288649/150‑1 (MQ=255)
              gCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt                                                                                                                                 <  1:209053/151‑1 (MQ=255)
              gCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt                                                                                                                                 <  1:41571/151‑1 (MQ=255)
               cAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGTTCGAACCCCCGATACGtt                                                                                                                                 >  1:972763/1‑150 (MQ=255)
                aGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGTTTGAACCCCCCGTACggt                                                                                                                                 >  2:138456/1‑147 (MQ=255)
                     aGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGGGAGGGGGGGGGTTGAACCCCCGCTACGTTGCCGtat                                                                                                                          >  1:277098/1‑151 (MQ=255)
                                   aaCATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAg                                                                                                             <  2:1144974/150‑1 (MQ=255)
                                    aCATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGc                                                                                                           <  1:1204145/151‑1 (MQ=255)
                                     cATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGTTTTCACCCCCCCCCCGGTTGCGTATACACACttttcccg                                                                                                            >  1:181912/1‑144 (MQ=21)
                                     cATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCg                                                                                                          <  1:1109475/151‑1 (MQ=255)
                                       tACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGTTCGAACCCCCCCAACGGTGCCGTATTCACCCCTTTCCGGCGTg                                                                                                        >  2:634952/1‑151 (MQ=21)
                                          tCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGGTTGAAACCCCGCTACGTTGCCGGATAAACACTTTCCCAGCGTg                                                                                                        >  2:1017019/1‑148 (MQ=21)
                                           ccACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCt                                                                                                      <  2:147957/149‑1 (MQ=255)
                                            cACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCt                                                                                                   <  2:519549/151‑1 (MQ=255)
                                             aCCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGGTTGAAACCCCCCTAACTTGTCGCATAAAAACTTTTCAGGCGGGCTcc                                                                                                    >  1:1273192/1‑149 (MQ=21)
                                               ccGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCa                                                                                                <  1:21178/151‑1 (MQ=255)
                                                      ccaTGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTc                                                                                         <  2:777161/151‑1 (MQ=255)
                                                      ccaTGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTc                                                                                         <  2:823514/151‑1 (MQ=255)
                                                        aTGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGGTTGCACCCCCCATACGTTTCCCTATAAACACTTTTCAGGCGGGGTCCCTCAGCCAccccg                                                                                       >  2:610936/1‑147 (MQ=18)
                                                           ttCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGGTCGGAACCCCCGTACGTTGCCGTATATACACATTTCCGGCGGGCTCCTTTAACCACCCGGac                                                                                     >  1:170905/1‑150 (MQ=17)
                                                            tCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGGGGGGGGGGTTCGAACCCCCCATACGTTGCCGTATACACACTTTTCAGGCGGGCTCCTTCAGCCCCTCGGac                                                                                     >  1:1240109/1‑149 (MQ=17)
                                                                 gCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCa                                                                               <  2:1165239/150‑1 (MQ=255)
                                                                            agaTAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGTTTGAACCCCCCATACGGTTCCGTATAAACACTTTTCCGGCGTGCTCCTTCCGCCCCCCCGGCACCCCCCCCAAATGtttt                                                                   >  1:452104/1‑151 (MQ=14)
                                                                             gaTAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTg                                                                  <  2:182157/151‑1 (MQ=255)
                                                                                  aaTGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCCATACGTTGCCGTATACACACTTTCCAGGCGGGCTCCTTCAGCCACTCGGACACCCCCCCCAATTGtttt                                                                   >  2:805847/1‑145 (MQ=255)
                                                                                   aTGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGTTTGAACCCCCCATAAGGTGCCGTATACACACTTTCCAGGCGGGCTCCCTCCGCCACTCCGGCAACTCCCCCAATTGttttttttcc                                                             >  2:716947/1‑144 (MQ=14)
                                                                                      cGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAAc                                                         <  2:73029/151‑1 (MQ=255)
                                                                                      cGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAAc                                                         <  1:211503/151‑1 (MQ=255)
                                                                                         aaaaaaaGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGGTTGGAACCCCCACACCGTTTCGTATAAAAACCTTTCAGGCGGGGTCCCTCAGCCCACCCGACACCCCCCCCAAATGTTTTTCTTCCcaa                                                          >  1:147624/1‑147 (MQ=2)
                                                                                           aaaaaGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCAt                                                    <  1:1016073/151‑1 (MQ=255)
                                                                                           aaaaaGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCAt                                                    <  1:235618/151‑1 (MQ=255)
                                                                                                 cTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGTGGGGGGGGTTTGAACCCCCCATACGTTGGCGTTTAAAACCTTTTCAGGCGGGGTCCTTCAGCCCCCCCGCCACCCCCCCCAAATGTTTTTTTTCCAAACCTCATtggtgg                                              >  1:593618/1‑151 (MQ=9)
                                                                                                         ttCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGAGTTGGAACCCCCCTACGTTGTCGTATACAAACTTTCCAGGCGGGGCCCTTCAGCCACCCGGGCACCCCACCAAATTGTTTTTCTAACAAACCCCATTGGGGGGAACgggg                                      >  1:212493/1‑151 (MQ=9)
                                                                                                            gTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGTTCGAACCCCCCATACGTTGCCGGATACACACTTTTCCGGCGGGGTCCCTCAGCCACCCCGGCACCCCCCCCAAATTTTTTTCTACCCAACCTCCTTGGGGGGAAAgggggg                                    >  2:1199347/1‑148 (MQ=2)
                                                                                                            gTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGgcg                                    <  2:887417/150‑1 (MQ=255)
                                                                                                            gTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGTTCGAACCCCCCATACGGTGCCGTATACACACTTTCCAGGCGGGCTCCTTCAGCCACTCGGACACCTCACCAAAATGTTTTGCTACCAAACCCCATGGGGGGCAACgggggg                                    >  2:827748/1‑147 (MQ=17)
                                                                                                              aCGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGct                                  <  2:537122/150‑1 (MQ=255)
                                                                                                                     cttcttTAAATATGGCGGTGAGGGGGGGGTTTGCAACCCCCCTACGTTTGCGTATAAAAACTTTTCAGGCGGGCTCCCTCAGCCCCTCGGGCACCTCCCCAAAATGTTTTTCTAACAAACCCCATGGGGGGGAACGGGGCGCTACtata                            >  1:174242/1‑149 (MQ=12)
                                                                                                                     cttcttTAAATATGGCGGTGAGGGGGGGGTTCGAACCCCCCATACGTTTCCGTATACACACTTTCCCGGCGGGCTCCTTCCGCCACCCGGACACCCCACCAAATTGTTTTTCTACCAAACCCCCTGGGGGGCAACGGGGCGctac                                >  2:592491/1‑145 (MQ=17)
                                                                                                                      ttcttTAAATATGGCGGTGAGGGGGGGATTTGGAACCCCCCTACGTTGCAGTAGACACACTTTTCAGGCGTGCTCCTTCAACCACTCGGACACCTCACCCAAATTTTTTGCTAACCAACCTCATTGGAGGCAACGGGGCGCCACTATAggg                         >  2:563423/1‑151 (MQ=17)
                                                                                                                            aaaTATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTgg                   <  1:235172/151‑1 (MQ=255)
                                                                                                                             aaTATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGa                  <  1:942468/151‑1 (MQ=255)
                                                                                                                                   gCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTaaaa            <  2:32573/151‑1 (MQ=255)
                                                                                                                                     ggTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACg          <  2:996468/151‑1 (MQ=255)
                                                                                                                                              ggggggATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCa      >  1:1056098/1‑149 (MQ=255)
                                                                                                                                                ggggATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCaagaa  <  2:820363/151‑1 (MQ=255)
                                                                                                                                                      |                                                                                                                                                  
TCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAA  >  NC_000913/925755‑926046

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.