Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	2,867,337	Δ96 bp	coding (120‑215/993 nt)	rpoS ←	RNA polymerase, sigma S (sigma 38) factor

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2867337	2867432	96	73 [0]	[0] 73	rpoS	RNA polymerase, sigma S (sigma 38) factor

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2867336	0 (0.000)	69 (1.070)	60/280	0.1	100%	coding (216/993 nt)	rpoS	RNA polymerase, sigma S (sigma 38) factor
	?	NC_000913	2867433 =	0 (0.000)					coding (119/993 nt)	rpoS	RNA polymerase, sigma S (sigma 38) factor

TTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGTTATCACTGGGTTCCTGTTCTACTAAGGCCTTTTCGTCAAAAACCTC  >  NC_000913/2867189‑2867485                                                                                                                                                    |                                                                                                                                                      ttCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGGAATTTTTACCCCCAAACCGAAGTTACCCCCGAACCACCCGCGGCGAGAGGCGGCCACTCCCCGCCGGGCGCCGCTCGCAAAAAAAAACTTTTCTTTGGccaa                                                                                                                                                     >  2:331291/1‑148 (MQ=255) ttCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGGTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGGGCGCGACGCGCAAAATAAACTTTTTTTTCGGCCaa                                                                                                                                                     >  2:859114‑M1/1‑148 (MQ=255)  tCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaa                                                                                                                                                     <  2:746477‑M1/149‑3 (MQ=255)   cGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaat                                                                                                                                                   <  1:979225‑M1/150‑5 (MQ=255)      tAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgt                                                                                                                                                <  1:693930‑M1/150‑8 (MQ=255)       aaGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgtta                                                                                                                                              <  1:85416‑M1/151‑10 (MQ=255)       aaGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgtt                                                                                                                                               <  2:171921‑M1/150‑9 (MQ=255)       aaGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgtt                                                                                                                                               <  2:499117‑M1/150‑9 (MQ=255)         ggTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatc                                                                                                                                            <  1:537097‑M1/151‑12 (MQ=255)             cAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactg                                                                                                                                        <  1:475669‑M1/151‑16 (MQ=255)              aGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgg                                                                                                                                       <  2:503779‑M1/151‑17 (MQ=255)              aGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaagcgttatcactgg                                                                                                                                       <  1:1009464‑M1/151‑17 (MQ=255)               gCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactggg                                                                                                                                      <  1:651224‑M1/151‑18 (MQ=255)                cAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTATCACCAGACGCCCGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACCCCGTGCGCGCCGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttttcactggg                                                                                                                                      >  2:1065550‑M1/1‑133 (MQ=255)                     ccAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCCGCCaaatcgttatcactgggttcc                                                                                                                                  >  1:465036‑M1/1‑128 (MQ=255)                           cACGATTGCCATAACGGCGGGCAAATTTTACCACCAGACGCAAGGTAATCTCGGTCATCCGGCGGCGAGAAGCGACATCTCCACGCAGGGCGCGCCGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactggggtcctgttct                                                                                                                            >  1:288653‑M1/1‑122 (MQ=255)                              gATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaa                                                                                                                       <  2:191061‑M1/151‑33 (MQ=255)                              gATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctacta                                                                                                                        <  1:68632‑M1/150‑32 (MQ=255)                               aTTGCCATAACGGCGGGCAATTTTTTCCACCAGACGCAAGTTACTCTCGAACATCCCGGGGCGAGAGGCGACATCTCCACGCAGTGGGCGACGCGCCAAATAAAATTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaa                                                                                                                       >  1:79520‑M1/1‑118 (MQ=255)                                       aaCGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggcctttt                                                                                                               <  1:885463‑M1/150‑41 (MQ=255)                                          ggcggGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtc                                                                                                           <  1:359090‑M1/151‑45 (MQ=255)                                          ggcggGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtc                                                                                                           >  2:678838‑M1/1‑107 (MQ=255)                                             gggCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaa                                                                                                         >  1:1026987‑M1/1‑104 (MQ=255)                                              ggCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaa                                                                                                        >  1:654327‑M1/1‑103 (MQ=255)                                              ggCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaa                                                                                                        >  1:553873‑M1/1‑103 (MQ=255)                                                     tttACCACCAGACGCAAGTTACTCTCGGCCATCCGGCGGCGAGAGGCGACATCACCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctca                                                                                                 <  2:222210‑M1/150‑55 (MQ=255)                                                     tttACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctca                                                                                                 >  2:587853‑M1/1‑96 (MQ=255)                                                      ttACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaac                                                                                               >  1:139480‑M1/1‑95 (MQ=255)                                                       tACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaac                                                                                               <  1:315203‑M1/150‑57 (MQ=255)                                                       tACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaac                                                                                               <  2:478997‑M1/150‑57 (MQ=255)                                                        accaccAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaact                                                                                              <  2:396947‑M1/150‑58 (MQ=255)                                                            ccaGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgt                                                                                          <  2:666736‑M1/150‑62 (MQ=255)                                                            ccaGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgt                                                                                          <  2:1056094‑M1/150‑62 (MQ=255)                                                            ccaGACGCAAGTTACTCTCGAGCATCCGGCGGCGAGAGGCGACATCTCCTCGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaacgccgtt                                                                                         <  2:205697‑M1/151‑63 (MQ=255)                                                              aGACGCAAGTTACTCTCGATCATCCTGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttcg                                                                                       <  2:237786‑M1/151‑65 (MQ=255)                                                               gACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctc                                                                                      <  1:768752‑M1/151‑66 (MQ=255)                                                                 cGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcat                                                                                    >  1:19529‑M1/1‑84 (MQ=255)                                                                    aaGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatca                                                                                  >  2:855841‑M1/1‑81 (MQ=255)                                                                    aaGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatca                                                                                  >  2:330351‑M1/1‑81 (MQ=255)                                                                     aGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaa                                                                                 >  2:790639‑M1/1‑80 (MQ=255)                                                                      gTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaat                                                                               <  1:337999‑M1/151‑73 (MQ=255)                                                                           tctcGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaattccgc                                                                          >  2:471804‑M1/1‑74 (MQ=255)                                                                            ctcGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaattccg                                                                           <  2:705084‑M1/149‑77 (MQ=255)                                                                                      cggcggCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaattccgcatcttcattt                                                                >  1:361310‑M1/1‑63 (MQ=255)                                                                                       ggcggcGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaattccgcatcttcattta                                                               >  2:478115‑M1/1‑62 (MQ=255)                                                                                        gcggcgAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaattccgcatcttcatttaaa                                                             <  2:1005085‑M1/151‑91 (MQ=255)                                                                                         cggcgAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaattccgcatcttcatttaaat                                                            >  2:227109‑M1/1‑60 (MQ=255)                                                                                              agagGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaattccgcatcttcatttaaatcatg                                                        >  2:430137‑M1/1‑55 (MQ=255)                                                                                                    gACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaattccgcatcttcatttaaatcatgaactttc                                                 <  2:710652‑M1/151‑103 (MQ=255)                                                                                                       aTCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaattccgcatcttcatttaaatcatgaactttcagc                                              >  2:913830‑M1/1‑46 (MQ=255)                                                                                                          tcCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaattccgcatcttcatttaaatcatgaactttcagcgt                                            >  2:82773‑M1/1‑43 (MQ=255)                                                                                                           ccACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaattccgcatcttcatttaaatcatgaactttcagcgta                                           <  1:579855‑M1/150‑109 (MQ=255)                                                                                                             aCGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaattccgcatcttcatttaaatcatgaactttcagcgtattc                                        >  1:498257‑M1/1‑40 (MQ=255)                                                                                                              cGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaattccgcatcttcatttaaatcatgaactttcagcgtattct                                       <  1:592975‑M1/151‑113 (MQ=255)                                                                                                                   tGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaattccgcatcttcatttaaatcatgaactttcagcgtattctgactc                                  >  2:212201‑M1/1‑34 (MQ=255)                                                                                                                   tGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaattccgcatcttcatttaaatcatgaactttcagcgtattctgactc                                  >  1:976047‑M1/1‑34 (MQ=255)                                                                                                                     cgcgACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaattccgcatcttcatttaaatcatgaactttcagcgtattctgactcat                                <  2:997326‑M1/151‑120 (MQ=255)                                                                                                                     cgcgACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaattccgcatcttcatttaaatcatgaactttcagcgtattctgactcat                                <  2:142756‑M1/151‑120 (MQ=255)                                                                                                                      gcgACGCGCAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaattccgcatcttcatttaaatcatgaactttcagcgtattctgactcata                               <  1:126519‑M1/151‑121 (MQ=255)                                                                                                                            cgcAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaattccgcatcttcatttaaatcatgaactttcagcgtattctgactcataaggtgg                         <  1:814923‑M1/151‑127 (MQ=255)                                                                                                                            cgcAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaattccgcatcttcatttaaatcatgaactttcagcgtattctgactcataaggtgg                         >  1:1068407‑M1/1‑25 (MQ=255)                                                                                                                              cAAAATAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgccaaaaacctcaactccgttctcatcaaattccgcatcttcatttaaatcatgaactttcagcgtattctgactcataaggtggct                       >  1:90527‑M1/1‑23 (MQ=255)                                                                                                                                aaaTAAACTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaattccgcatcttcatttaaatcatgaactttcagcgtattctgactcataaggtggctcc                     <  2:5411‑M1/151‑131 (MQ=255)                                                                                                                                     aaCTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaattccgcatcttcatttaaatcataaactttcagcgtattctgactcataaggtggctcctaccc                <  1:856002‑M1/151‑136 (MQ=255)                                                                                                                                      aCTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaattccgcatcttcatttaaatcatgaactttcagcgtattctgactcataaggtggctcctacccg               >  2:867236‑M1/1‑15 (MQ=255)                                                                                                                                      aCTTCTTCTTCGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaattccgcatcttcatttaaatcatgaactttcagcgtattctgactcataaggtggctcctacccg               <  1:527451‑M1/151‑137 (MQ=255)                                                                                                                                        ttcttcttcGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaattccgcatcttcatttaaatcatgaactttcagcgtattctgactcataaggtggctcctacccgtg             >  1:828048‑M1/1‑13 (MQ=255)                                                                                                                                         tcttcttcGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaattccgcatcttcatttaaatcatgaactttcagcgtattctgactcataaggtggctcctacccgtg             >  2:771909‑M1/1‑12 (MQ=255)                                                                                                                                          cttcttcGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaattccgcatcttcatttaaatcatgaactttcagcgtattctgactcataaggtggctcctacccgtgat           >  1:299842‑M1/1‑11 (MQ=255)                                                                                                                                           ttcttcGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaattccgcatcttcatttaaatcatgaactttcagcgtattctgactcataaggtggctcctacccgtgatc          >  1:305881‑M1/1‑10 (MQ=255)                                                                                                                                                cGGCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaattccgcatcttcatttaaatcatgaactttcagcgtattctgactcataaggtggctcctacccgtgatccctt      <  1:1027672‑M1/150‑146 (MQ=255)                                                                                                                                                 ggCCaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaattccgcatcttcatttaaatcatgaactttcagcgtattctgactcataaggtggctcctacccgtgatcccttg     >  2:74462‑M1/1‑4 (MQ=255)                                                                                                                                                   ccaaatcgttatcaatgggttcctggtctactaaggccttgtcgtcaaaaacgtcaactccgttctcatcaacttccgcgtcttcatttaaatcatgaactttcggcggattctgactcataaggtggctcctacccgtgatcccttgacg  >  2:283586‑M1/1‑2 (MQ=255)                                                                                                                                                    |                                                                                                                                                      TTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGTTATCACTGGGTTCCTGTTCTACTAAGGCCTTTTCGTCAAAAACCTC  >  NC_000913/2867189‑2867485

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑