Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,835,2190AC41.1% 102.7 / 10.8 56V736G (GTT→GGT) hypFcarbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein
Reads supporting (aligned to +/- strand):  ref base A (24/9);  new base C (0/23);  total (24/32)
Fisher's exact test for biased strand distribution p-value = 9.18e-09
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACGCAGCAAACGGTTATGAATAACCCCGCCGCTAAATACCAGCGTAGTGATACC  >  NC_000913/2835070‑2835364
                                                                                                                                                       |                                                                                                                                                 
ggATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAAc                                                                                                                                                  <  1:1056011/151‑1 (MQ=255)
  aTGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAAccc                                                                                                                                                >  1:546300/1‑151 (MQ=255)
     cGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCt                                                                                                                                             <  2:966639/151‑1 (MQ=255)
       aCGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGc                                                                                                                                           <  2:612284/151‑1 (MQ=255)
         gCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGccc                                                                                                                                         <  1:452058/151‑1 (MQ=255)
           tGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGcccc                                                                                                                                        >  1:499205/1‑150 (MQ=255)
           tGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGcccc                                                                                                                                        >  1:470061/1‑150 (MQ=255)
            ggCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCa                                                                                                                                       <  1:961615/150‑1 (MQ=255)
              cgcgTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCag                                                                                                                                      >  1:742194/1‑149 (MQ=255)
              cgcgTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCag                                                                                                                                      >  1:582998/1‑149 (MQ=255)
               gcgTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCagag                                                                                                                                    <  2:3628/150‑1 (MQ=255)
                 gTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGAc                                                                                                                                  >  1:1062807/1‑150 (MQ=255)
                                cGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCAccc                                                                                                                   <  2:739995/150‑1 (MQ=255)
                                 ggggACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACccgc                                                                                                                 >  1:949535/1‑151 (MQ=255)
                                    gACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCgg                                                                                                              <  1:44450/151‑1 (MQ=255)
                                       gCATGTGTAGGCCGGATAAGGCTTTTACCCCGCACCCGGCAAGGGTGTCCAAATGCAACCCTTTTTATCCTTTCTGGCCTCCCCCCGCTACCCACCGCCCCGCAGCAATACCCCCCTCCCCCAGAAACAACCCGCCATCACCCGCCGGTa                                                                                                            <  2:135526/150‑1 (MQ=255)
                                       gCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTa                                                                                                            >  2:933168/1‑150 (MQ=255)
                                                  cggaaaagggtttttACCCCGCACCCGAAATTGGTGCCAAAATGCAACACGTTTTACCCGTTCTGGCCTCCCCCCGCTAACCAACGCCCCGCAAAAAAACCCCCCTCCCCCAGAAACAACCCGCCATCACCCGCCGGTAAACTCTGTGGaa                                                                                                <  2:1130574/139‑1 (MQ=255)
                                                          gggttttCCGCCGCATCGGGCAATGGTTTCAAAATAAACCCCTTTTTATCCGTTCGGGCCTCCCCCCGCAAACCACCGCGCCGCAGCAATACCCCCCTCCCCCAGAAAAAACCCCCCACCCCCCGCCGGTAAACTCTGTGGAAAGAGCAAt                                                                                        <  1:235571/147‑1 (MQ=255)
                                                          ggCGTTTCCCCCGCACCCGGAAATGGTGCCAAAATGCAACCCGTTTTATCCGTTCTGGCCTTCCCCCCCAACCCACCGCCCCGCAGAAAAACCCCCCTCCCCAAGAGAAAACCCGCCATCCCCCGCCGGTAAACTCTGTGGAAAGAGCAAt                                                                                        <  1:117714/151‑1 (MQ=255)
                                                                    ccgcTTCGGGAAAGGTTGTCAAAATCCACCCCTTTTTACCCTTTCTGGCCTTCCCCCCCAACCAACCGCCCCGCAGAAATACCCCCCGGCCCAAGAGAAAAACCGCCACCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCa                                                                               <  2:373826/150‑1 (MQ=255)
                                                                    ccgcATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATc                                                                                >  1:37449/1‑149 (MQ=255)
                                                                    ccgcATCCGGCAATGGTGTCCAAAGCCAACCCTTTTTATCCGTTCTGGACTCCCCCCGCAAACCACCGCCCCGCAGCAAAACCCCCCTGCCCAAGAAACAACCCCCCACCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCa                                                                               <  1:563905/150‑1 (MQ=255)
                                                                    ccccacccGGCAAGGGTGTCAAAATCCAACACTTTTTATCCGTTCGGGCCTCCCCCCGCAAACCACCGCGCCGCAGAAATACCCCCCGCCCCAAGAGAAAACCCGCCACCCCCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATc                                                                                <  2:267653/143‑1 (MQ=255)
                                                                     cgcccccGGAAAGGGTGCCAAAATGCAACCCTTTTTACCCGTTCTGGACTCCCCCCGCAACCCACCGCCCCGCAGAAATACCCCCCCCCCCAAGAGACAACCCGCCATCCCCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGc                                                                             <  1:839037/146‑1 (MQ=255)
                                                                         tCCGCCAATGTTGACCAAAGGCACCTCGTGTTATCCTTTCGGGACTCCCCCCGTTACCCACGGCGCGGCAGAAATACCCCCCGGCCCAAAAGAAAAGCCGCCCCCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCgag                                                                          <  2:360613/150‑1 (MQ=255)
                                                                         ccgggaaaTGGTGTCAAAATGAAACGCTTTTTATCCGTTCTGGCCTTCCCCCGCAACCCAACGCGCCGAAGAAAAACCCCCCTGCCCAAGAGAAAACCCCCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCgag                                                                          <  1:496033/144‑1 (MQ=255)
                                                                           cGGCAATGGTGTCCAAATGCCAAACGTTTTATCCGTTCTGGCCTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGCAAATAGCAATGAGAATTCAg                                                                              >  2:1126207/1‑144 (MQ=255)
                                                                            ggaattGGTGCCAAAATGCAACATTTTTTACCCTTCCTGGCCTCCCCCCCCAACCCACCGCCCCGCAGAAAAACCCCCCCCCCCAAGAAAAAACCCGCCACCCCCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCgag                                                                          <  2:646425/142‑1 (MQ=255)
                                                                            ggCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATa                                                                       >  1:472288/1‑150 (MQ=255)
                                                                            ggCAATGGTGCCAAAATGCAACACGTTTTCCCCGTTCTGGCCTCCCCCCCATACCCACCGCCCCGCAGAAATACCCCCCTGCCCAAGAAAAAACCCGCCACCCCCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATa                                                                       <  2:891440/150‑1 (MQ=255)
                                                                               aaTGGTGTCAAAATCCAACACTTTTTACCTTTTCTGGTTTCCCCCCCTTACCCACCGCGCCGCAAAAATACCCCCCTCCCCCAGAAACAACCCGCCACCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAAt                                                                     <  1:1159808/149‑1 (MQ=255)
                                                                                gtGGTGCCCAAATCCACCCCTTTTTACCCGTTCTGGACTCCCCCCGCTACCCACCCCGCCGCAGAAAAACCCCCCGGCCCCAGAGAAAAACCGCCACCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATgc                                                                   <  2:560493/149‑1 (MQ=255)
                                                                                  ggTGTCCAAATGCAACACGTTTTATCCGTTCTAGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGCAAGAGCAATGTGAAATCAGCGAGATAATGCGcc                                                                >  1:902540/1‑151 (MQ=255)
                                                                                    tgtCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGcc                                                                >  2:618796/1‑149 (MQ=255)
                                                                                    tgtCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGcc                                                                >  2:237916/1‑149 (MQ=255)
                                                                                     gtCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGcc                                                                >  2:991378/1‑148 (MQ=255)
                                                                                       caaaaGGCAACCCTTTTTCCCCTTTCTGGCTTCCCCCCGCAACCCACCGCGCCGAAGAAAAACCCCCCTCCCCAAGAGACAACCCCCCATCCCCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCa                                                               <  1:215829/145‑1 (MQ=255)
                                                                                         aatgacAACACTTTTTATCCGTCCGGGTCTTCCCCGCTAAACCACCGCCCGGCACCAAAAACCCCCCCCCCCAGAGAAAACCCTCCTTCCCCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACg                                                           <  1:532869/144‑1 (MQ=255)
                                                                                         aaaTGCAACTCGTTTTACCCTTTCGGGACTCCCCCCGCAACCAACCGCCCCGCAGCAAAACCCCCCTCCCCAAGAAACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACg                                                           <  2:260166/149‑1 (MQ=255)
                                                                                               aaccctttttcccctttCTGGCCTCCCCCCGCAACCCACCGCGCCGCAGAAATACCCCCCGCCCCAAAAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACgca                                                   <  2:565891/136‑1 (MQ=255)
                                                                                               aaCACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACgc                                                    >  1:951728/1‑150 (MQ=255)
                                                                                                 cgttttttACCCGTTCGGGACTCCCCCCGCAACCCACCGCGCCGCAGAAAAACCCCCCGCCCCCAGAAACAACCCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCAc                                                      <  2:61177/142‑1 (MQ=255)
                                                                                                     ttttATCCTTTCTGGACTTCCCCCGCTACCCACCGCGCGGCAGCATTACCCCCCTGCCCCAGAGAAAACCCCCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACGCAGCaaa                                              <  2:364343/150‑1 (MQ=255)
                                                                                                     ttttATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACGCAGCAAAc                                             >  1:1025546/1‑151 (MQ=255)
                                                                                                     ttttACCCTTTTTGGACTTCCCCCGCTACCCACCGCGCCGCACAAATACCCCCCGCCCCAAGAGAAAACCCGCCATCCCCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACgcag                                                  <  1:547895/146‑1 (MQ=255)
                                                                                                           cctttCTGGCCTCCCCCCCCTAACCACCGCCCCGCAGCAATACCCCCCTCCCCCAGAGAAAACCCGCCATCCCCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACGCAGCAAACGGt                                          <  1:464632/145‑1 (MQ=255)
                                                                                                              ttCTGGACTTCCCCCGCAAACCAACGCGCCGCAACAATACCCCCCTCCCCCAGAAAAAACCCGCCACCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACGCAGCAAACGGTTAt                                       <  1:817223/148‑1 (MQ=255)
                                                                                                                cTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACGCAGCAAACGGTTATGAAt                                   >  2:864753/1‑150 (MQ=255)
                                                                                                                 tGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACGCAGCAAACGGTTATGAATa                                  >  2:157613/1‑150 (MQ=255)
                                                                                                                          cccGCAACCCACCGCGCCGCAGAAATACCCCCCCCCCCCAGAGAAAACCCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACGCAGCAAACGGTTATGAATAACCccg                            <  1:946117/147‑1 (MQ=255)
                                                                                                                               tAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACGCAGCAAACGGTTATGAATAACCCCGCCGCTAAAt                   >  1:15225/1‑151 (MQ=255)
                                                                                                                                              gcagcaATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACGCAGCAAACGGTTATGAATAACCCCGCCGCTAAATACCAGCGTAGTg       >  1:425807/1‑150 (MQ=255)
                                                                                                                                                agcaATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACGCAGCAAACGGTTATGAATAACCCCGCCGCTAAATACCAGCGTAGTGAt     >  1:586044/1‑150 (MQ=255)
                                                                                                                                                  caATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACGCAGCAAACGGTTATGAATAACCCCGCCGCTAAATACCAGCGTAGTGATAcc  >  2:76939/1‑151 (MQ=255)
                                                                                                                                                  caATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACGCAGCAAACGGTTATGAATAACCCCGCCGCTAAATACCAGCGTAGTGATAcc  >  2:605825/1‑151 (MQ=255)
                                                                                                                                                       |                                                                                                                                                 
GGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACGCAGCAAACGGTTATGAATAACCCCGCCGCTAAATACCAGCGTAGTGATACC  >  NC_000913/2835070‑2835364

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: