Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 2,835,219 | 0 | A | C | 41.1% | 102.7 / 10.8 | 56 | V736G (GTT→GGT) | hypF | carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein |
Reads supporting (aligned to +/- strand): ref base A (24/9); new base C (0/23); total (24/32) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 9.18e-09 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCT‑AACCAA‑CGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACGCAGCAAACGGTTATGAATAACCCCGCCGCTAAATACCAGCGTAGTGATACC > NC_000913/2835070‑2835364 | ggATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCT‑AACCAA‑CGCGCCGCAGCAATAAc < 1:1056011/151‑1 (MQ=255) aTGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCT‑AACCAA‑CGCGCCGCAGCAATAAccc > 1:546300/1‑151 (MQ=255) cGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCT‑AACCAA‑CGCGCCGCAGCAATAACCCCCt < 2:966639/151‑1 (MQ=255) aCGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCT‑AACCAA‑CGCGCCGCAGCAATAACCCCCTGc < 2:612284/151‑1 (MQ=255) gCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCT‑AACCAA‑CGCGCCGCAGCAATAACCCCCTGccc < 1:452058/151‑1 (MQ=255) tGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCT‑AACCAA‑CGCGCCGCAGCAATAACCCCCTGcccc > 1:499205/1‑150 (MQ=255) tGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCT‑AACCAA‑CGCGCCGCAGCAATAACCCCCTGcccc > 1:470061/1‑150 (MQ=255) ggCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCT‑AACCAA‑CGCGCCGCAGCAATAACCCCCTGCCCCa < 1:961615/150‑1 (MQ=255) cgcgTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCT‑AACCAA‑CGCGCCGCAGCAATAACCCCCTGCCCCag > 1:742194/1‑149 (MQ=255) cgcgTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCT‑AACCAA‑CGCGCCGCAGCAATAACCCCCTGCCCCag > 1:582998/1‑149 (MQ=255) gcgTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCT‑AACCAA‑CGCGCCGCAGCAATAACCCCCTGCCCCagag < 2:3628/150‑1 (MQ=255) gTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCT‑AACCAA‑CGCGCCGCAGCAATAACCCCCTGCCCCAGAGAc > 1:1062807/1‑150 (MQ=255) cGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCT‑AACCAA‑CGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCAccc < 2:739995/150‑1 (MQ=255) ggggACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCT‑AACCAA‑CGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACccgc > 1:949535/1‑151 (MQ=255) gACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCT‑AACCAA‑CGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCgg < 1:44450/151‑1 (MQ=255) gCATGTGTAGGCCGGATAAGGCTTTTACCCCGCACCCGGCAAGGGTGTCCAAATGCAACCCTTTTTATCCTTTCTGGCCTCCCCCCGCT‑ACCCAC‑CGCCCCGCAGCAATACCCCCCTCCCCCAGAAACAACCCGCCATCACCCGCCGGTa < 2:135526/150‑1 (MQ=255) gCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCT‑AACCAA‑CGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTa > 2:933168/1‑150 (MQ=255) cggaaaagggtttttACCCCGCACCCGAAATTGGTGCCAAAATGCAACACGTTTTACCCGTTCTGGCCTCCCCCCGCT‑AACCAA‑CGCCCCGCAAAAAAACCCCCCTCCCCCAGAAACAACCCGCCATCACCCGCCGGTAAACTCTGTGGaa < 2:1130574/139‑1 (MQ=255) gggttttCCGCCGCATCGGGCAATGGTTTCAAAATAAACCCCTTTTTATCCGTTCGGGCCTCCCCCCGCA‑AACCAC‑CGCGCCGCAGCAATACCCCCCTCCCCCAGAAAAAACCCCCCACCCCCCGCCGGTAAACTCTGTGGAAAGAGCAAt < 1:235571/147‑1 (MQ=255) ggCGTTTCCCCCGCACCCGGAAATGGTGCCAAAATGCAACCCGTTTTATCCGTTCTGGCCTTCCCCCCCA‑ACCCAC‑CGCCCCGCAGAAAAACCCCCCTCCCCAAGAGAAAACCCGCCATCCCCCGCCGGTAAACTCTGTGGAAAGAGCAAt < 1:117714/151‑1 (MQ=255) ccgcTTCGGGAAAGGTTGTCAAAATCCACCCCTTTTTACCCTTTCTGGCCTTC‑CCCCCC‑AACCAACCGCCCCGCAGAAATACCCCCCGGCCCAAGAGAAAAACCGCCACCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCa < 2:373826/150‑1 (MQ=255) ccgcATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCT‑AACCAA‑CGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATc > 1:37449/1‑149 (MQ=255) ccgcATCCGGCAATGGTGTCCAAAGCCAACCCTTTTTATCCGTTCTGGACTCCCCCCGCA‑AACCAC‑CGCCCCGCAGCAAAACCCCCCTGCCCAAGAAACAACCCCCCACCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCa < 1:563905/150‑1 (MQ=255) ccccacccGGCAAGGGTGTCAAAATCCAACACTTTTTATCCGTTCGGGCCTCCCCCCGCA‑AACCAC‑CGCGCCGCAGAAATACCCCCCGCCCCAAGAGAAAACCCGCCACCCCCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATc < 2:267653/143‑1 (MQ=255) cgcccccGGAAAGGGTGCCAAAATGCAACCCTTTTTACCCGTTCTGGACTCCCCCCGCA‑ACCCAC‑CGCCCCGCAGAAATACCCCCCCCCCCAAGAGACAACCCGCCATCCCCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGc < 1:839037/146‑1 (MQ=255) tCCGCCAATGTTGACCAAAGGCACCTCGTGTTATCCTTTCGGGACTCCCCCCGTT‑ACCCAC‑GGCGCGGCAGAAATACCCCCCGGCCCAAAAGAAAAGCCGCCCCCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCgag < 2:360613/150‑1 (MQ=255) ccgggaaaTGGTGTCAAAATGAAACGCTTTTTATCCGTTCTGGCCTTCCCCCGCA‑ACCCAA‑CGCGCCGAAGAAAAACCCCCCTGCCCAAGAGAAAACCCCCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCgag < 1:496033/144‑1 (MQ=255) cGGCAATGGTGTCCAAATGCCAAACGTTTTATCCGTTCTGGCCTTCACCCGCT‑AACCAA‑CGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGCAAATAGCAATGAGAATTCAg > 2:1126207/1‑144 (MQ=255) ggaattGGTGCCAAAATGCAACATTTTTTACCCTTCCTGGCCTCCCCCCCCA‑ACCCAC‑CGCCCCGCAGAAAAACCCCCCCCCCCAAGAAAAAACCCGCCACCCCCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCgag < 2:646425/142‑1 (MQ=255) ggCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCT‑AACCAA‑CGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATa > 1:472288/1‑150 (MQ=255) ggCAATGGTGCCAAAATGCAACACGTTTTCCCCGTTCTGGCCTCCCCCCCAT‑ACCCAC‑CGCCCCGCAGAAATACCCCCCTGCCCAAGAAAAAACCCGCCACCCCCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATa < 2:891440/150‑1 (MQ=255) aaTGGTGTCAAAATCCAACACTTTTTACCTTTTCTGGTTTCCCCCCCTT‑ACCCAC‑CGCGCCGCAAAAATACCCCCCTCCCCCAGAAACAACCCGCCACCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAAt < 1:1159808/149‑1 (MQ=255) gtGGTGCCCAAATCCACCCCTTTTTACCCGTTCTGGACTCCCCCCGCT‑ACCCAC‑CCCGCCGCAGAAAAACCCCCCGGCCCCAGAGAAAAACCGCCACCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATgc < 2:560493/149‑1 (MQ=255) ggTGTCCAAATGCAACACGTTTTATCCGTTCTAGACTTCACCCGCT‑AACCAA‑CGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGCAAGAGCAATGTGAAATCAGCGAGATAATGCGcc > 1:902540/1‑151 (MQ=255) tgtCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCT‑AACCAA‑CGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGcc > 2:618796/1‑149 (MQ=255) tgtCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCT‑AACCAA‑CGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGcc > 2:237916/1‑149 (MQ=255) gtCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCT‑AACCAA‑CGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGcc > 2:991378/1‑148 (MQ=255) caaaaGGCAACCCTTTTTCCCCTTTCTGGCTTCCCCCCGCA‑ACCCAC‑CGCGCCGAAGAAAAACCCCCCTCCCCAAGAGACAACCCCCCATCCCCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCa < 1:215829/145‑1 (MQ=255) aatgacAACACTTTTTATCCGTCCGGGTCTTC‑CCCGCTAAACCAC‑CGCCCGGCACCAAAAACCCCCCCCCCCAGAGAAAACCCTCCTTCCCCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACg < 1:532869/144‑1 (MQ=255) aaaTGCAACTCGTTTTACCCTTTCGGGACTCCCCCCGC‑‑AACCAACCGCCCCGCAGCAAAACCCCCCTCCCCAAGAAACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACg < 2:260166/149‑1 (MQ=255) aaccctttttcccctttCTGGCCTCCCCCCGCA‑ACCCAC‑CGCGCCGCAGAAATACCCCCCGCCCCAAAAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACgca < 2:565891/136‑1 (MQ=255) aaCACGTTTTATCCGTTCTGGACTTCACCCGCT‑AACCAA‑CGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACgc > 1:951728/1‑150 (MQ=255) cgttttttACCCGTTCGGGACTCCCCCCGCA‑ACCCAC‑CGCGCCGCAGAAAAACCCCCCGCCCCCAGAAACAACCCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCAc < 2:61177/142‑1 (MQ=255) ttttATCCTTTCTGGACTTCCCCCGCT‑ACCCAC‑CGCGCGGCAGCATTACCCCCCTGCCCCAGAGAAAACCCCCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACGCAGCaaa < 2:364343/150‑1 (MQ=255) ttttATCCGTTCTGGACTTCACCCGCT‑AACCAA‑CGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACGCAGCAAAc > 1:1025546/1‑151 (MQ=255) ttttACCCTTTTTGGACTTCCCCCGCT‑ACCCAC‑CGCGCCGCACAAATACCCCCCGCCCCAAGAGAAAACCCGCCATCCCCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACgcag < 1:547895/146‑1 (MQ=255) cctttCTGGCCTCCCCCCCCT‑AACCAC‑CGCCCCGCAGCAATACCCCCCTCCCCCAGAGAAAACCCGCCATCCCCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACGCAGCAAACGGt < 1:464632/145‑1 (MQ=255) ttCTGGACTTCCCCCGCA‑AACCAA‑CGCGCCGCAACAATACCCCCCTCCCCCAGAAAAAACCCGCCACCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACGCAGCAAACGGTTAt < 1:817223/148‑1 (MQ=255) cTGGACTTCACCCGCT‑AACCAA‑CGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACGCAGCAAACGGTTATGAAt > 2:864753/1‑150 (MQ=255) tGGACTTCACCCGCT‑AACCAA‑CGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACGCAGCAAACGGTTATGAATa > 2:157613/1‑150 (MQ=255) cccGCA‑ACCCAC‑CGCGCCGCAGAAATACCCCCCCCCCCCAGAGAAAACCCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACGCAGCAAACGGTTATGAATAACCccg < 1:946117/147‑1 (MQ=255) t‑AACCAA‑CGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACGCAGCAAACGGTTATGAATAACCCCGCCGCTAAAt > 1:15225/1‑151 (MQ=255) gcagcaATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACGCAGCAAACGGTTATGAATAACCCCGCCGCTAAATACCAGCGTAGTg > 1:425807/1‑150 (MQ=255) agcaATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACGCAGCAAACGGTTATGAATAACCCCGCCGCTAAATACCAGCGTAGTGAt > 1:586044/1‑150 (MQ=255) caATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACGCAGCAAACGGTTATGAATAACCCCGCCGCTAAATACCAGCGTAGTGATAcc > 2:76939/1‑151 (MQ=255) caATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACGCAGCAAACGGTTATGAATAACCCCGCCGCTAAATACCAGCGTAGTGATAcc > 2:605825/1‑151 (MQ=255) | GGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCT‑AACCAA‑CGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATCACCCGCCGGTAAACTCTGTGGAAAGAGCAATGTGAAATCAGCGAGATAATGCGCCAGACGTGCACGCAGCAAACGGTTATGAATAACCCCGCCGCTAAATACCAGCGTAGTGATACC > NC_000913/2835070‑2835364 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |