Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,423,2940TC43.4% 116.9 / 31.9 83intergenic (+100/+129)yhdZ/rrfFputative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
Reads supporting (aligned to +/- strand):  ref base T (7/40);  new base C (36/0);  total (43/40)
Fisher's exact test for biased strand distribution p-value = 1.48e-16
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACT  >  NC_000913/3423148‑3423442
                                                                                                                                                  |                                                                                                                                                     
cTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGGCCCGCcccccccccccc                                                                                                                                                     >  2:8061/1‑149 (MQ=255)
cTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCCGCCCCCCACCCTccc                                                                                                                                                    >  1:1155930/1‑149 (MQ=255)
 tAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCCCCCCCCcgg                                                                                                                                                  >  1:438047/1‑151 (MQ=255)
    aTCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCCCCCCCCCGGcc                                                                                                                                                >  1:903125/1‑150 (MQ=255)
    aTCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCCGCCCCCCCCCCCCCCGGcc                                                                                                                                                >  1:742832/1‑150 (MQ=255)
       agagCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCCGCcccccccccccccgccc                                                                                                                                                >  2:401944/1‑142 (MQ=37)
             tACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGGCCTGCCCCCCCCCCCCCCGGcccgtggtt                                                                                                                                         >  2:905927/1‑141 (MQ=255)
             tACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTGCCCCCCCCCCCCCCGGCCGTTGCtt                                                                                                                                         >  1:27917/1‑148 (MQ=255)
                gAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGGCCTCACCCCCCCCCCCGGGCCGCTGCtttcgaa                                                                                                                                    >  2:832952/1‑145 (MQ=255)
                      aTTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTTCCCGCCCCCCCCCGGGCCGTTGCTTTCCCACGtt                                                                                                                               >  1:1071430/1‑148 (MQ=255)
                       tttttATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGTTCTCGCCCCCACCCTCCTGGCCGTGGCtttttcaacgtcaa                                                                                                                             >  1:274318/1‑138 (MQ=255)
                         tttATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCCCCCCCCCGGCCGTTGCTTCGCAACGTTCaaa                                                                                                                           >  1:139504/1‑149 (MQ=255)
                           tATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGGCCTGGCCCCCCCCCCCCCGGGCGTTGCTTCTCaaaggttcaatcc                                                                                                                        >  1:25003/1‑139 (MQ=255)
                            aTCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGc                                                                                                                      <  2:605124/151‑1 (MQ=255)
                             tCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTATGGCAGTTTATGGCGGGAGTGCCGTCCGCCCCCCCCCTGGACCCTTTTTCGAAACGtt                                                                                                                               >  1:82244/1‑141 (MQ=255)
                               gCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTGCCGCCCCCCCCCCCCCCGGCCGTTGCTTCGCCACAGTCCAAACCCCTcc                                                                                                                   >  2:78084/1‑151 (MQ=21)
                                  ggTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcgg                                                                                                                <  2:375800/151‑1 (MQ=255)
                                     aaTCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTCCCCCCCCCCCCCCCGGCCGTTTCTTTCCAACATTTAAATCCGCCCCccgc                                                                                                               >  2:416392/1‑149 (MQ=255)
                                              aTTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCt                                                                                                    <  1:731249/151‑1 (MQ=255)
                                              aTTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCCGCCCCCCCCCCCCCCGGCCGTTTCTTCGCCACGTTTAAAATCGCCCCCCGCGGGttttttc                                                                                                     >  1:103096/1‑146 (MQ=255)
                                              aTTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCCCCCCCCCCCCCCCCCGGCCGGTGCTTCGCAACCTTTCAAACCCCCCCccgcgggctt                                                                                                         >  2:269300/1‑142 (MQ=255)
                                                 gAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCCCCCCCCCGGCCGTTTCTTCGCAACCTTCTAATCCCCCCCCCGCCGGttt                                                                                                         >  2:1137221/1‑143 (MQ=18)
                                                  aaTGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTc                                                                                                <  1:864507/151‑1 (MQ=255)
                                                   aTGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTGCCCCCCCCCCCCCCCCCGGCCGCTTCTTTTCAAAGCTAAAATTCCCTCCccgccgggat                                                                                                         >  2:732394/1‑135 (MQ=16)
                                                    agTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTGCCCCCCCCCCCCCCGGCCGGTGCTTCCCAACCTTCAAAACCGCTCCCCGCGGGTTTTTCCTACTc                                                                                                >  1:797449/2‑149 (MQ=255)
                                                      ttAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCCGCCCCCCCCCCCCCCGGCCGGTGCTTCGCAAAGTTCAAATACGCCCCCCGCGGGGTTGTCCTTCTCgggg                                                                                            >  2:395038/1‑150 (MQ=255)
                                                        aGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGgaga                                                                                          <  2:742606/151‑1 (MQ=255)
                                                        aGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGgaga                                                                                          <  2:437923/151‑1 (MQ=255)
                                                            cGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAgtg                                                                                       <  2:516520/150‑1 (MQ=255)
                                                            cGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCCTCCCCCCCCCCCCCCGGCCGGTGCTTCTCAACCTTCCAATCCCCTCCCCGCGGGGTTGTTCTCCTCCGGggaggg                                                                                       >  2:416324/1‑148 (MQ=17)
                                                             gAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGGCCCGCCCCCCCCCCCCCCGGCCGTTTCTTCGCCACGTTCCAATCCGCCCCCCGCCGGTTTGTTCCACTCCGGGGAgtggt                                                                                     >  2:987948/1‑149 (MQ=255)
                                                             gAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGtt                                                                                     <  2:434403/151‑1 (MQ=255)
                                                               aaaGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCa                                                                                   <  2:275436/151‑1 (MQ=255)
                                                               aaaGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCCGCCCGCCCCCCCCCCGGCCGTTGCTTCGCAACCGTCAAATCCCCCCCCCGCGGGTTTTTCCCACTCCGGAGAGGGtt                                                                                     >  1:487434/1‑149 (MQ=17)
                                                                  gCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTGCCCCCCCCCCCCCCGGCCGGTGGTTCGCAACGGTCAAATACCCCCCCCGCGGGGTTGTTCTACTCCGGGGGGGGTTTAcc                                                                                 >  2:813366/1‑150 (MQ=255)
                                                                    aaaaaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGGCCCTCCCCCCCCCCCCCCGGCCGTTGCTTTGCCAACGTCAAATCCGCCCCCCGCGGGTTTTTTCTTCTCcggggggggttttccccc                                                                              >  2:856923/1‑136 (MQ=255)
                                                                    aaaaaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTTCCCCCCACCCCCCCGGCCGTTGCTTCGCAACATTCAAAACCCCTCCCCGCGGGTTTGTCCTACTCCGGAGAGTGTTCACCGa                                                                               >  1:292456/1‑150 (MQ=255)
                                                                    aaaaaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTGCCCGCCCCCCCCCCCGCCGCTGCCTTTCGACGCTCAAATCCGCCCCCCGCGGACTTCTCCCCTTCGGGggaggggtctcc                                                                                 >  2:977068/1‑140 (MQ=255)
                                                                      aaaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGacaa                                                                            <  2:69151/151‑1 (MQ=255)
                                                                      aaaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCCTGCCGCCCCCCCCCCGGCCGCTGCTTTTCAACGTTCCAATCCGCCCCCCCCGGGGTTTTCCTTCTCCGGGGAGGGGTCAcccccc                                                                             >  2:148793/1‑146 (MQ=255)
                                                                       aaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGacaaa                                                                           <  2:516466/151‑1 (MQ=255)
                                                                            cATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAacaaca                                                                      <  1:656937/151‑1 (MQ=255)
                                                                             aTCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCTGCCTCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGacaaaca                                                                         <  1:787567/147‑1 (MQ=255)
                                                                             aTCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTGCCCGCCCCCCCCCCGGCCGTTGCTTCGCAAAGGTCAAATCCCCTCCCCGCGGGTTTTTCCTACTCCGGAGAGTGGTCACCCccaaaaaa                                                                        >  1:613429/1‑148 (MQ=255)
                                                                               ccTTTCGGATGCCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCTCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGa                                                                    <  2:8923/150‑1 (MQ=255)
                                                                                  ttCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCCCCCCCCCGGCCCTTGCTTCGCAACGTTTAAATCCCCCCCCCGCGGGTTTTTCCTACTCCGGAGAGTGGTTACCCacaaaaaaaaaaaaa                                                                 >  1:846259/1‑143 (MQ=14)
                                                                                    cGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAAc                                                              <  2:393019/151‑1 (MQ=255)
                                                                                     ggATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAAc                                                              <  2:669842/150‑1 (MQ=255)
                                                                                     ggATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACa                                                             <  2:414535/151‑1 (MQ=255)
                                                                                     ggATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACa                                                             <  2:738147/151‑1 (MQ=255)
                                                                                       aTGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCCGCCCCCCCCCCCCCCGGCCGGTGCTTCTCCACCTTCAAAACCCCCCCCCCCGGGGTTTTTCTACCCCGGGGAGGGTTTTCCCCCAAACAACACATAaaaaaa                                                            >  2:10597/1‑150 (MQ=9)
                                                                                         ggCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACaaaa                                                          <  1:1096365/150‑1 (MQ=255)
                                                                                         ggCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAg                                                         <  2:354802/151‑1 (MQ=255)
                                                                                              ttCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGccc                                                     <  2:924920/150‑1 (MQ=255)
                                                                                              ttCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGccc                                                     <  2:707659/150‑1 (MQ=255)
                                                                                              ttCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCACCCCCCCGGCCGGTGCTTCGCAAAGTTCAAATCCCCCCCCCGCGGGGTTTTCCTTCTCCGGGGAGGGTTTACCCACAAACAACAAATAAAAAAAAAAGcc                                                      >  1:434473/1‑149 (MQ=9)
                                                                                                 gCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCACCCTCCCGGCCGGTGCTTCGCAACGTTCAAATCCGCTCCCCGCGGGGTTTTCCTACTCCGGGGAGGGTTTACCCACAAACAAAAGATAAAAAAAAAAGACCCGTc                                                 >  1:814036/1‑151 (MQ=11)
                                                                                                     gatttgatGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTcc                                             <  1:89452/151‑1 (MQ=39)
                                                                                                     gatttgatGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCACCCCCCGGGCCGTTGCTTCGCAACGGTCAAATCCCCCCCCCGCGGGGTTTTTCTACTCGGGGGAGTGTTCACCCACAAAAAAAAGAAAAAAAAAAAAGGCCAGTCtttc                                             >  1:576252/1‑149 (MQ=11)
                                                                                                      atttgatGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCg                                            <  1:395140/151‑1 (MQ=38)
                                                                                                       tttgatGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCg                                            <  2:749466/150‑1 (MQ=38)
                                                                                                        ttgatGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCGGa                                           <  2:458291/150‑1 (MQ=38)
                                                                                                        ttgatGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGa                                           <  2:1091191/150‑1 (MQ=38)
                                                                                                        ttgatGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCCCCCCCCCGGCCGTTTCTTCGCAACGTTCCAATCCCCCCCCCGCGGGTTTTTTCTACCCCGGGGAGGGTTTACCCACAAAAAAAAGAAAAAAAAAAAAGCCCCATCTTCCggc                                          >  1:21181/1‑149 (MQ=2)
                                                                                                         tgatGTCTGGCAGTTTATGGCGGGCGTCCTCCCCCCCCCCCCCCGGGCCGGCTCGTCTCAAAGTTCCAAAACGCTCCCCGCCGGTTTTTTCTTCTCGGGGGGGGGGTCAACCCCCAAAAACAGAaaaaaaaaaaagacccgccctgc                                             >  2:347997/1‑134 (MQ=2)
                                                                                                          gatGTCTGGCAGTTTATGGCGGGCGTCCTTGCCCCCCCCCCCCCGGCCGGTGCTTCCCTACCTTCTAATCCGCCCCCCGCCGGGTTTTCCTACTCTGGGGGGGGTTTCCCGCCCAACAACCAACAAAAAAAAAAGCCCCGtttttc                                             >  2:381624/1‑144 (MQ=2)
                                                                                                            tGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCCCCCCCCCGGCCGGTTCTTCGCAACATTCAAAACCCCCCCCCGCGGATTTTTTCTACTCCGGAGAGTGGTCACCCACAAAAAACAGATAAAAAAAAAAGCCCAGTCTTCCGAc                                          >  1:837584/1‑147 (MQ=11)
                                                                                                             gTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAg                                      <  1:813623/150‑1 (MQ=38)
                                                                                                             gTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAg                                      <  2:848691/150‑1 (MQ=38)
                                                                                                              tCTGGCAGTTTATGGCGGGCGGCCTGCCCCCCCCCCCCCCGGCCGGTGCTTCGCAACGTTCAAAACCGCCCCCCGCGGGTTTTTTCTACTCGGGGGGGGGTTTACCGCCAAACAACACATAAAACAAAAAACCCAGACCTCCGACTGAGcc                                    >  2:50643/1‑151 (MQ=255)
                                                                                                                       ttATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGttt                            <  1:416503/150‑1 (MQ=38)
                                                                                                                        tATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGtttt                           <  2:27911/150‑1 (MQ=38)
                                                                                                                           ggcgggcgTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTAttt                       <  2:814845/151‑1 (MQ=38)
                                                                                                                           ggcgggcaTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTAttt                       <  2:833315/151‑1 (MQ=38)
                                                                                                                            gcgggcgTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTg                      >  2:1062548/1‑151 (MQ=38)
                                                                                                                               ggcgTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATg                   <  2:139475/151‑1 (MQ=38)
                                                                                                                                gcgTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGt                  <  2:797198/151‑1 (MQ=39)
                                                                                                                                  gTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGGGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCt                <  1:906216/151‑1 (MQ=255)
                                                                                                                                       gCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCa            <  1:710484/150‑1 (MQ=40)
                                                                                                                                       gCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAg           <  2:902834/151‑1 (MQ=40)
                                                                                                                                        cccGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGt          <  1:1089100/151‑1 (MQ=40)
                                                                                                                                          cGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTc        >  1:692209/1‑151 (MQ=40)
                                                                                                                                             cACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCt     <  1:8059/151‑1 (MQ=40)
                                                                                                                                              aCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCt     >  2:528344/1‑150 (MQ=40)
                                                                                                                                                 cTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTAct  >  2:1105550/1‑150 (MQ=40)
                                                                                                                                                  |                                                                                                                                                     
CTAAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACT  >  NC_000913/3423148‑3423442

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: