Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913753,1250TA42.0% 165.7 / 60.7 113intergenic (‑330/+60)ybgD/gltAputative fimbrial‑like adhesin protein/citrate synthase
Reads supporting (aligned to +/- strand):  ref base T (52/13);  new base A (0/47);  total (53/60)
Fisher's exact test for biased strand distribution p-value = 5.84e-20
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 118 total aligned reads displayed.

CATTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGC  >  NC_000913/752976‑753272
                                                                                                                                                      |                                                                                                                                                   
cATTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCatat                                                                                                                                                     >  2:1152091/1‑150 (MQ=255)
cATTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCatat                                                                                                                                                     >  2:219634/1‑150 (MQ=255)
 aTTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCAtata                                                                                                                                                    >  2:697132/1‑150 (MQ=255)
  ttttCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATaa                                                                                                                                                   >  1:700356/1‑150 (MQ=255)
  ttttCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATaa                                                                                                                                                   <  2:148319/150‑1 (MQ=255)
   tttCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATaaa                                                                                                                                                  <  1:934629/150‑1 (MQ=255)
    ttCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATaaaa                                                                                                                                                 >  1:18102/1‑150 (MQ=255)
      cATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAAt                                                                                                                                               <  2:887485/150‑1 (MQ=255)
      cATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATc                                                                                                                                              <  2:1260104/151‑1 (MQ=255)
       aTAGGGTTATAAATGCGACTTCCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGACTGTTAATGGATTTTATGTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATc                                                                                                                                              <  2:309714/150‑1 (MQ=255)
       aTAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCa                                                                                                                                             <  1:271819/151‑1 (MQ=255)
            gTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCg                                                                                                                                        <  1:1043279/151‑1 (MQ=255)
                     gCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGa                                                                                                                                >  2:241010/1‑150 (MQ=255)
                      cGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAAc                                                                                                                              >  2:399582/1‑151 (MQ=255)
                      cGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAAc                                                                                                                              >  2:191882/1‑151 (MQ=255)
                       gACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAAcg                                                                                                                             >  1:145723/1‑151 (MQ=255)
                            ccATGAAGTTTTTAATTAAAAGTATTGGGTTGCTGATAATTTGAGTTGTTCTTTTTTTTTTAAATTTTTATATAGGTCTGTTAATGGATTTTATTTTT‑AAATTTTTTTGTGTTTAGGAATAAAAAAATCAACCCGCCATATGAAcggcg                                                                                                                          <  1:842521/149‑1 (MQ=255)
                              atgtatttttaAATTGAAATTATGGGGTGGCTAAAAATTTAAGCTGTTTTTTTTTTTTAAAATTTCTATATGGTTTTTTTAATGGTTTTTATTTTT‑TAAATTTTTTGTGTTAGGGAAAAAAAAAACCAACCCGCCATATGAACGGCGGGt                                                                                                                       <  1:969507/144‑1 (MQ=255)
                              aTGAATTTTTTAATTGAAATTATTGGTTTGTTAATATTTTGAGTTTTTTTTTTTTTTTAAAATTTCTATATGGTTTTGTTATTGGTTTTTATTTTT‑ACATTTTTTTGTGTTTAGGCATAAAAAAATCAACCCGCCATATGAACGGCGGGtt                                                                                                                      <  1:894837/151‑1 (MQ=255)
                                gAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGtt                                                                                                                      >  2:1115/1‑149 (MQ=255)
                                 aaGTTTTAAATTGAAAGTTTGGGGTTGCTGATATTTTGAGTTTTTTTTTTTTTTTTAAATATCTATATAGGTCTGTAAAGGTATTTTTTTTTT‑ACAATTTTTTGTTTTAAGGCATAAAAAAATCAACCCGCCATATGAACGGCGGGTTaa                                                                                                                    <  1:883792/150‑1 (MQ=255)
                                 aaGTTTTAAATAGAAATTATTGGGTTGCTGATAATTTGAGTTTTTTTATTTTTTTTAAATATCTATATGGGTTTTTTAATGGATTTTTTTTTT‑AAATTTTTTTGTGTTTAGGAATAAAAAAATCAACCCGCCATATGAACGGCGGGtt                                                                                                                      <  1:1033987/148‑1 (MQ=255)
                                    tttttAATTGAAAGTTTTGGTTTGCTGAAAATTTGAGTTTTTCTTTTCTTTTAAAATATCTATATAGTTCTGTTAATGGATTTTTTTTTT‑ACAATTTTTTGTGTTAAGGCAAATAAAAATCACCCCGCCATATGAACGGCGGGTTaaaa                                                                                                                  <  2:1297223/149‑1 (MQ=255)
                                    tttttAATTAAAAGTATTGGGTTGTTAATATTTTGAGCTTTTCTTTTTTTTTAAAATATTTATATAGGTTTGTTAATGGATTTTATTTTT‑AAATTTTTTTGTTTTTAGGCATAAAAAAATCAACCCGCCATATGAACGGCGGGTTaaaa                                                                                                                  <  1:295002/149‑1 (MQ=255)
                                       taaaTTAAAAGTTTGGGGTTTCTAATATTTTGAGCTTTTCTTTTTTTTTTAAATATCTATATAGGTCTTTAAATGGATTTTATTTTT‑ACAATTTTTTGTTTTAAGAAATAAAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATAtt                                                                                                              <  2:1215613/148‑1 (MQ=255)
                                         taTTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTa                                                                                                            >  2:815183/2‑150 (MQ=255)
                                          aTTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTtaaaatttt                                                                                                             >  2:258805/1‑143 (MQ=255)
                                           ttaaaaTTATTGGGTTGCTGATATTTTGAGCTTTTTTTTTTTTTTTAAATATCTATATAGTTTTTTTAATGGTTTTTTTTTTT‑AAAATTTTTTGTTTTTAGGAATAAAAAAAACAACCCGCCATATGAACGGCGGGTTAAAATATTTAc                                                                                                           <  2:230479/146‑1 (MQ=255)
                                            taaaaTTATTGGGTTGCTATTAATTTGGTTTTTTTTTTTTTTTTTAATTATTTATATAGTTTTTTAATTGTTTTTTTTTTTT‑ACAATTTTTTGTGTTTGGGCATAAAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATAttt                                                                                                             <  2:676657/144‑1 (MQ=255)
                                            tGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACaa                                                                                                         >  1:43198/1‑150 (MQ=255)
                                              aaaGTATTGGGTTGCTGATATTTTGATCTTTTATATTCTTTTAAAATATCTATATAGTTCTTTTAATGGTTTTTTTTTTT‑ACAATTTTTTGTGTTTAGGCAAATAAAAACCACCCCGCCATATGAACGGCGGGTTAAAATATTTACa                                                                                                          <  1:136698/147‑1 (MQ=255)
                                              aaaGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACtt                                                                                                      >  1:1151673/1‑151 (MQ=255)
                                                  tATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGc                                                                                                   >  1:1216765/1‑150 (MQ=255)
                                                      ggtttGCTGATATTTTGAGCTGTTCTTTTTTTTTAAAATATCTATATAGGTCTGTTAATGGTTTTTTTTTTT‑ACATTTTTTTGTTTTTAGGCATAAAAAAATCAACCCGCCATATGAACGGCGGGtt                                                                                                                      <  1:729775/124‑1 (MQ=255)
                                                       ggTTGTTGAAAATTTGAGTTGTTTTTTTTTTTTTAAATATCTATATGGGTTTGTTAATGGTTTTTATTTTT‑ACAATTTTTTGTTTTAAGACATAAAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCaa                                                                                             <  2:449018/151‑1 (MQ=255)
                                                         tggCTAATATTTTGGGTTTTTTTTTTTTTTTTAAATATTTAAAGGGGTTTATAAATAGTTTTTTTTTTT‑TCATTTTTTTTTTTTTAGAAATAAAAAACTCACCCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAAc                                                                                            <  2:700670/148‑1 (MQ=255)
                                                          tGCTGATATTTTGAGCTTTTCTATTTTTTTAAATTATCTATATAGGTCTGTTAATGGATTTTATTTTT‑AAATTTTTTTGTTTTTAGGCATAAAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAAcc                                                                                           <  1:598534/150‑1 (MQ=255)
                                                          tGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAAaccacc                                                                                           >  2:1126037/1‑150 (MQ=255)
                                                          tGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAAATTAGCAATCAAc                                                                                            >  2:494343/1‑149 (MQ=255)
                                                          tGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGGTAAAATATTTACAACTTAGCAAACAAcc                                                                                           >  1:1057513/1‑150 (MQ=255)
                                                                tAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGGTAAAATATATACAACTTAGCAATAAAACATTaa                                                                                      >  2:491839/1‑149 (MQ=255)
                                                                 aaTTTTAGCTGTTCTATTTTTTTAAAAAATAAAAATAGTCCTATAAATGATTTTTATTTAA‑AAAATTTTTGGTATATGGGCATAAAAAAATAACACCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCACCCATTa                                                                                       <  2:91358/147‑1 (MQ=255)
                                                                   ttggAGCTTTTTTTTTTTTTTAAAATATCTATATGGGTTTTTTAATGAATTTTTTTTTT‑AAAATTTTTTGTTTTTAGGAATAAAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTaa                                                                                      <  1:642430/143‑1 (MQ=255)
                                                                     tGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAAACATTAACGCtt                                                                                 >  2:557354/1‑149 (MQ=255)
                                                                      gagtttttCTTTTTTTTTTAAATTTTTATATAGGTCTG‑TAATGGGTTTTTTTTTTAACAATTTTTTGTTTTTAGGCTTAAAAAAATCACCCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGa                                                                               <  2:1074060/144‑1 (MQ=255)
                                                                         ctttccttttttttttAAATATTTAAATGGCTTTGTTATTGATTTTTTTTTCA‑ATATTTTTTTCTTTATAGAAAAAAAAAACTTTGCCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGat                                                                              <  1:32788/137‑1 (MQ=255)
                                                                          tGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTTAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATc                                                                           >  1:877404/1‑150 (MQ=255)
                                                                           gTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAAAGCTTGat                                                                              >  2:337781/1‑146 (MQ=255)
                                                                            ttCTATTTTTTTAAAATATCTATATAGTTCTTTTAATGGATTTTATTTTT‑AAAATTTTTTGTTTTAAGGCATAAAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATc                                                                           <  1:876122/148‑1 (MQ=255)
                                                                            ttCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTTTTTTT‑ACAATTTTTTGTTTTTAGGCATAAAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCg                                                                          <  1:232866/149‑1 (MQ=255)
                                                                             tCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATTTTTATAATTTAGCAATCAACCCTTTACGCTTGataacccct                                                                       >  2:264577/1‑145 (MQ=255)
                                                                               ttttttttttAAATCCTTTTATGGGTCTGTTAATGTTTTTTTTTTTT‑AAATTTTTTTGTTTTAAGGTATAAAAAAACCACCCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCttt                                                                      <  2:194369/145‑1 (MQ=255)
                                                                               tATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGGTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGTTATCGCgttt                                                                     >  1:857864/1‑151 (MQ=255)
                                                                                 ttCTTTTTAAATATCTATATAGGTTTTTTAATGGATTTTTTTTTT‑ACATTTTTTTGTTTTTAGGCATAAAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCtttt                                                                     <  1:248460/149‑1 (MQ=255)
                                                                                  tCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTTCAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTaa                                                                   >  1:1155003/1‑150 (MQ=255)
                                                                                      tttAAATATCTATATAGGTCTGTTAATGGATTTTTTTTTT‑ACATTTTTTTGTGTTTAGGCATAAAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTc                                                               <  1:1200230/150‑1 (MQ=255)
                                                                                      tttAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTTAAATATTTTCAACTTAGCAATCAAACATTAACGCTTGATATCGCTTTTAAAGTcg                                                              >  1:689130/1‑151 (MQ=255)
                                                                                         aaatttttaaagaGGTTTTTTAATGATTTTTATTTTT‑AAAATTTTTTGTTTTTAGGTATAAAAAAATAAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTcgc                                                             <  2:911751/137‑1 (MQ=255)
                                                                                         aaaTCTCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTTCAACTTAGCAATCAACCAATAAAGCTTGATATCGCTTTTAAAGTCGCGt                                                           >  2:555174/1‑151 (MQ=255)
                                                                                         aaaTATTTATAAGGATCTGTTATTGGATTTTATTTTT‑AAAATTTTTTGTGTTTAGCAAAAAAAAAAACACCCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTcgcg                                                            <  2:210119/150‑1 (MQ=255)
                                                                                         aaaTATCTATATAGGTCTTTTAATGGATTTTATTTTT‑ACAATTTTTTGTTTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGt                                                           <  1:62960/151‑1 (MQ=255)
                                                                                              tCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAAAGCTTGATATCGCTTTTTAAATCGCGttttt                                                       >  2:1301572/1‑150 (MQ=255)
                                                                                               cTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTc                                                      >  2:1153886/1‑150 (MQ=255)
                                                                                                tatataGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAAATTTGCAATCAAACATTAAAGCCTGATATTGCTTTTTAAGACGCGttttt                                                       >  2:795803/1‑148 (MQ=255)
                                                                                                  tataggaagggcgaTGGGTTTTGTATTA‑ACAATTTTTTGTGTTTAGGCATAGGAAAATCACCCCGCCATATGAACGGAGGGGTAAAATATTTAAAAAATAGCAATCAACCATTAACGCTTGATATCTCTTTTAAAGTAGAGttttt                                                       >  2:904278/14‑146 (MQ=255)
                                                                                                  tataGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCatat                                                  >  1:1129792/1‑151 (MQ=255)
                                                                                                      gtttttttAAGGAATTTTTTTTTA‑ACATTTTTTTTTTTTAAGGCATAAAAAAATAACCCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCt                                               <  2:582074/144‑1 (MQ=255)
                                                                                                       gTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTTAAATATTTACAACTTTACAATAAAACATTAACGCTTGATATCGCTTTTAAAGACGCGTTTTTCATATcacgt                                             >  2:814803/1‑147 (MQ=255)
                                                                                                       gTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTAAAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGt                                             >  1:911719/1‑151 (MQ=255)
                                                                                                        tCTGTTAATGGATTTTTTTTTT‑ACAATTTTTTGTGTTTAGGCATAAAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGt                                             <  1:899393/150‑1 (MQ=255)
                                                                                                         cTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAAAATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGACGCGTTTTTCATATCCTGtat                                           >  1:1138990/1‑151 (MQ=255)
                                                                                                          tGTTAATGTATTTTATTTTA‑ACAATTTTTTGTTTTTAGGAATAAAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGta                                            <  2:69707/149‑1 (MQ=255)
                                                                                                              aaTGGATTTTATTTTT‑AAAATTTTTTGTGTTTAGGCATAAAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACa                                        <  2:257863/149‑1 (MQ=255)
                                                                                                                tGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCCTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCt                                     >  1:1167078/1‑150 (MQ=255)
                                                                                                                 ggtttttattttT‑ACAATTTTTTGTGTTTAGGCATAAAAAAAACACCCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTg                                    <  1:1164972/147‑1 (MQ=255)
                                                                                                                 gatttttattttT‑ACATTTTTTTTTGTTTAGGAAAAAAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGta                                            <  2:360651/139‑1 (MQ=255)
                                                                                                                    ttttattttT‑ACATTTTTTTGTTTTTAGGAAAAAAAAAAACACCCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGa                                   <  2:764883/148‑1 (MQ=255)
                                                                                                                    ttttattttT‑AAATTTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGAGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGAcg                                 <  1:204040/150‑1 (MQ=255)
                                                                                                                    ttttattttT‑AAATTTTTTTGTGTTTAGGCATAAAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTg                                    <  1:638410/147‑1 (MQ=255)
                                                                                                                     tttattttT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGAcgcg                               >  1:364383/1‑151 (MQ=255)
                                                                                                                      tttttttt‑AAATTTTTTTTTGTTTAAACATAAAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGAcgcg                               <  2:907844/147‑1 (MQ=255)
                                                                                                                       ttttttt‑ACAATTTTTTGTGTTTAGGCATAAAAAAATCACCCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCgg                              <  2:572248/148‑1 (MQ=255)
                                                                                                                           ttt‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTTAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACggg                         >  1:1269210/1‑151 (MQ=255)
                                                                                                                            tt‑ACAATTTTTTGTTTTTAGGCATAAAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACggg                         <  1:349072/150‑1 (MQ=255)
                                                                                                                                 aaTTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGGTAAAATATTTACAACTTAGCAATCAACCATTAAAGCTTTATATCGCTTTTAAAGTCGCGTTTTTTATATCCTGTATACAGCTGACGCGGGCGGGCAAt                     >  1:727454/1‑150 (MQ=255)
                                                                                                                                 aaTTTTTTGTGTTTAGGAATAAAAAAACCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAAt                     <  2:1266293/150‑1 (MQ=255)
                                                                                                                                   ttttttGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGGTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCtt                  >  2:364954/1‑151 (MQ=255)
                                                                                                                                    tttttGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAAATTAGCAATCAACCATTAAAGCTTGATATCGCTTTTAAAATAGCGGTTTTCATATCCTGTATACAACTGAAGCGGACGGGCAATCtt                  >  2:712000/1‑150 (MQ=255)
                                                                                                                                    tttttGTGTTTAGAAATAAAAAAACCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCtt                  <  2:920653/150‑1 (MQ=255)
                                                                                                                                      tttGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTAAAACTTAACAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATAACCTGTATACAGCTGACGCGGACGGGCAATCtt                  >  2:1076822/1‑148 (MQ=255)
                                                                                                                                       ttGTTTTTAGGCATAAAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCAt               <  1:240871/150‑1 (MQ=255)
                                                                                                                                       ttGTGTTTAGGAATAAAAAAATCACCCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCa                <  1:479948/149‑1 (MQ=255)
                                                                                                                                          tgtTTAGGAATAAAAAAACCACCCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATAcc            <  2:18119/150‑1 (MQ=255)
                                                                                                                                            tttAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTc         >  1:282153/1‑151 (MQ=255)
                                                                                                                                            tttAGGAATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATAc             <  1:770985/147‑1 (MQ=255)
                                                                                                                                            tttAGGAATAAAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATa              <  2:745116/146‑1 (MQ=255)
                                                                                                                                              tAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTTCTATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTc         >  1:1035975/1‑149 (MQ=255)
                                                                                                                                              tAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCAc       >  1:704946/1‑151 (MQ=255)
                                                                                                                                                   atatAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGc  >  1:866905/1‑151 (MQ=255)
                                                                                                                                                   ataaAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACtgt    <  1:696823/149‑1 (MQ=255)
                                                                                                                                                      |                                                                                                                                                   
CATTTTCATAGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTT‑ACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGC  >  NC_000913/752976‑753272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑