Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,594,053 (C)6→7 pseudogene (73/1461 nt) yneO ← pseudogene, AidA homolog

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,594,0471.C100.0% 174.8 / NA 46pseudogene (79/1461 nt)yneOpseudogene, AidA homolog
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base C (24/22);  total (24/22)

TATCAACCCGAACGCGAGTGTTCCCTTGGGTATCGCCTTTCACGTTCATCTTATCGGTGGGCGAATTATCGCCGCCCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGTGCCCCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTAT  >  NC_000913/1593897‑1594191
                                                                                                                                                       |                                                                                                                                                
tATCAACCCGAACGCGAGTGTTCCCTTGGGTATCGCCTTTCACGTTCATCTTATCGGTGGGCGAATTATCGCCGCCCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGttt                                                                                                                                                   >  2:869573/1‑151 (MQ=255)
 aTCAACCCGAACGCGAGTGTTCCCTTGGGTATCGCGTTTCACGTTCATCTTATCGGTGGGCGAATTATCGCCGCCCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTGCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGttt                                                                                                                                                   <  2:1180263/150‑1 (MQ=255)
         gAACGCGAGTGTTCCCTTGGGTATCGCCTTTCACGTTCATCTTATCGGTGGGCGAATTATCGCCGCCCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTccccccctt                                                                                                                                         >  1:121343/1‑148 (MQ=255)
         gAACGCGAGTGTTCCCTTGGGTATCGCCTTTCACGTTCATCTTATCGGTGGGCGAATTATCGCCGCCCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTccccccctt                                                                                                                                         >  1:953253/1‑148 (MQ=255)
         gAACGCGAGTGTTCCCTTGGGTATCGCCTTTCACGTTCATCTTATCGGTGGGCGAATTATCGCCGCCCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTccccccctt                                                                                                                                         <  2:291649/151‑4 (MQ=255)
          aaCGCGAGTGTTCCCTTGGGTATCGCCTTTCACGTTCATCTTATCGGTGGGCGAATTATCGCCGCCCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTcccccccttc                                                                                                                                        <  2:954661/151‑5 (MQ=255)
          aaCGCGAGTGTTCCCTTGGGTATCGCCTTTCACGTTCATCTTATCGGTGGGCGAATTATCGCCGCCCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTcccccccttc                                                                                                                                        <  2:336399/151‑5 (MQ=255)
               gAGTGTTCCCTTGGGTATCGCCTTTCACGTTCATCTTATCGGTGGGCGAATTATCGCCGCCCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTAt                                                                                                                                    <  2:692752/151‑1 (MQ=255)
                  tgtTCCCTTGGGTATCGCCTTTCACGTTCATCTTATCGGTGGGCGAATTATCGCCGCCCAGCGTCGCGTTGCACGTCATTAGGCCATTGTTTCCGGGATAGTTGCCGTTAACGGTCCGTACATTCACCGGTTTCCCCCCCTTCGCTa                                                                                                                                     >  2:455321/1‑147 (MQ=255)
                   gtTCCCTTGGGTATCGCCTTTCACGTTCATCTTATCGGTGGGCGAATTATCGCCGCCCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCAt                                                                                                                                >  2:1141048/1‑151 (MQ=255)
                       ccTTGGGTATCGCCTTTCACGTTCATCTTATCGGTGGGCGAATTATCGCCGCCCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGa                                                                                                                            <  1:88908/151‑1 (MQ=255)
                        cTTGGGTATCGCCTTTCACGTTCATCTTATCGGTGGGCGAATTATCGCCGCCCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGa                                                                                                                            >  1:324517/1‑150 (MQ=255)
                        cTTGGGTATCGCCTTTCACGTTCATCTTATCGGTGGGCGAATTATCGCCGCCCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGa                                                                                                                            >  1:212469/1‑150 (MQ=255)
                         ttGGGTATCGCCTTTCACGTTCATCTTATCGGTGGGCGAATTATCGCCGCCCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAAc                                                                                                                          >  2:1156838/1‑151 (MQ=255)
                           ggctATCGCCTTTCACGTTCATCTTATCGGTGGGCGAATTATCGCCGCCCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAAcc                                                                                                                         <  2:223678/147‑1 (MQ=255)
                            ggTATCGCCTTTCACGTTCATCTTATCGGTGGGCGAATTATCGCCGCCCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGt                                                                                                                       >  1:278920/1‑151 (MQ=255)
                            ggTATCGCCTTTCACGTTCATCTTATCGGTGGGCGAATTATCGCCGCCCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGt                                                                                                                       >  2:554946/1‑151 (MQ=255)
                             gTATCGCCTTTCACGTTCATCTTATCGGTGGGCGAATTATCGCCGCCCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTg                                                                                                                      <  1:354121/151‑1 (MQ=255)
                              tATCGCCTTTCACGTTCATCTTATCGGTGGGCGAATTATCGCCGCCCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTgc                                                                                                                     >  2:105301/1‑151 (MQ=255)
                                   ccTTTCACGTTCATCTTATCGGTGGGCGAATTATCGCCGCCCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCa                                                                                                                <  2:350338/151‑1 (MQ=255)
                                      ttCACGTTCATCTTATCGGTGGGCGAATTATCGCCGCCCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCAt                                                                                                               <  1:475572/149‑1 (MQ=255)
                                      ttCACGTTCATCTTATCGGTGGGCGAATTATCGCCGCCCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCAt                                                                                                               <  2:643963/149‑1 (MQ=255)
                                              cATCTTATCGGTGGGCGAATTATCGCCGCCCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGtt                                                                                                     >  2:179318/1‑151 (MQ=255)
                                                       ggTGGGCGAATTATCGCCGCCCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTGGCCGTTAACGGTCAGTCCATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGAt                                                                                            <  2:121344/151‑1 (MQ=255)
                                                        gTGGGCGAATTATCGCCGCCCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGAt                                                                                            >  2:1062464/1‑150 (MQ=255)
                                                        gTGGGCGAATTATCGCCGCCCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATa                                                                                           <  1:1047945/151‑1 (MQ=255)
                                                        gTGGGCGAATTATCGCCGCCCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATa                                                                                           <  2:108410/151‑1 (MQ=255)
                                                          gggCGAATTATCGCCGCCCAGCGTCGCTTTGAACGTCATCAGGCCATTGTTTCCGTTATAGTTGCCGTTAACGGTCAGTACATTCCCCGATTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGt                                                                                         <  2:829132/151‑1 (MQ=255)
                                                                 ttATCGCCGCCCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGAATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGtttt                                                                                   >  1:323589/1‑150 (MQ=255)
                                                                       ccgccCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGac                                                                             >  2:1035547/1‑150 (MQ=255)
                                                                       ccgccCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGac                                                                             >  2:913999/1‑150 (MQ=255)
                                                                       ccgccCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGac                                                                             <  1:704643/150‑1 (MQ=255)
                                                                          cccAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGc                                                                         <  2:375740/151‑1 (MQ=255)
                                                                               cGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGTGc                                                                    >  1:15396/1‑151 (MQ=255)
                                                                                 tCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGTGccc                                                                  >  1:447309/1‑151 (MQ=255)
                                                                                    cgTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGTGccccc                                                                <  2:443484/150‑1 (MQ=255)
                                                                                     gTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGTGccccccc                                                              >  2:59117/1‑151 (MQ=255)
                                                                                              catcaGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGTGCCCCCCCAGGCATaa                                                     <  1:196754/150‑1 (MQ=255)
                                                                                                    gCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGTGCCCCCCCAGGCATAACGTTCat                                              <  1:1223987/151‑1 (MQ=255)
                                                                                                      cATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGTGCCCCCCCAGGCATAACGTTCatat                                            <  1:105302/151‑1 (MQ=255)
                                                                                                             tCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGTGCCCCCCCAGGCATAACGTTCATATCACCTGc                                     >  2:849782/1‑151 (MQ=255)
                                                                                                              ccGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGTGCCCCCCCAGGCATAACGTTCATATCACCTGc                                     >  2:1172486/1‑150 (MQ=255)
                                                                                                              ccGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGTGCCCCCCCAGGCATAACGTTCATATCACCTGCa                                    <  1:593348/151‑1 (MQ=255)
                                                                                                               cGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGTGCCCCCCCAGGCATAACGTTCATATCACCTGc                                     >  1:131673/1‑149 (MQ=255)
                                                                                                                  tataGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGTGCCCCCCCAGGCATAACGTTCATATCACCTGCAgtg                                 >  2:471784/1‑150 (MQ=255)
                                                                                                                           cGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGTGCCCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTc                       >  1:438013/1‑151 (MQ=255)
                                                                                                                           cGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGTGCCCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTc                       <  1:1024953/151‑1 (MQ=255)
                                                                                                                               aaCGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGTGCCCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCg                    <  1:789075/150‑1 (MQ=255)
                                                                                                                               aaCGGTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGTGCCCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGa                   <  1:783973/151‑1 (MQ=255)
                                                                                                                                  ggTCAGTACATTCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGTGCCCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACAt                >  1:955588/1‑151 (MQ=255)
                                                                                                                                             tCCCCGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGTGCCCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGt     >  1:219460/1‑151 (MQ=255)
                                                                                                                                              ccccGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGTGCCCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGt     <  2:953250/150‑1 (MQ=255)
                                                                                                                                                ccGGTTTCCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGTGCCCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTAt  >  1:1075505/1‑151 (MQ=255)
                                                                                                                                                       |                                                                                                                                                
TATCAACCCGAACGCGAGTGTTCCCTTGGGTATCGCCTTTCACGTTCATCTTATCGGTGGGCGAATTATCGCCGCCCAGCGTCGCGTTGAACGTCATCAGGCCATTGTTTCCGGTATAGTTGCCGTTAACGGTCAGTACATTCCCCGGTTTCCCCCCTTCGCTATTCATTTGAACCGTGCCGCCATTCTCCAGGTTGCCGCCGATAGTGGTTTTAGCGACACGCAGTGCCCCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTAT  >  NC_000913/1593897‑1594191

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: