Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,132,321	C→T	T156T (ACC→ACT)	flgD →	flagellar hook assembly protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,132,321	0	C	T	100.0%	326.2 / NA	82	T156T (ACC→ACT)	flgD	flagellar hook assembly protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (38/44);  total (38/44)

GGGAACCGGCAGTGAAGAAGGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACCGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGTTTGCTCTGGTGCAGGGTG  >  NC_000913/1132180‑1132466                                                                                                                                              |                                                                                                                                                  gggAACCGGCAGTGAAGAAGGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGtt                                                                                                                                          <  1:74332/151‑1 (MQ=255)  ggAACCGGCAGTGAAGAAGGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTc                                                                                                                                         >  1:157812/1‑151 (MQ=255)       cGGCAGTGAAGAAGGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGt                                                                                                                                    >  2:628555/1‑151 (MQ=255)         gCAGTGAAGAAGGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGttt                                                                                                                                  >  2:1232293/1‑151 (MQ=255)          cAGTGAAGAAGGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTc                                                                                                                                 >  1:1218711/1‑151 (MQ=255)          cAGTGAAGAAGGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTc                                                                                                                                 >  1:341150/1‑151 (MQ=255)           aGTGAAGAAGGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTc                                                                                                                                 >  1:66293/1‑150 (MQ=255)           aGTGAAGAAGGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTc                                                                                                                                 >  1:174793/1‑150 (MQ=255)           aGTGAAGAAGGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTc                                                                                                                                 >  2:348927/1‑150 (MQ=255)              gaagaaGGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCt                                                                                                                             <  2:1016454/151‑1 (MQ=255)               aagaagGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTg                                                                                                                            >  2:607699/1‑151 (MQ=255)                agaagGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTgg                                                                                                                           <  1:713648/151‑1 (MQ=255)                agaagGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTgg                                                                                                                           >  2:89678/1‑151 (MQ=255)                agaagGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTgg                                                                                                                           <  2:544214/151‑1 (MQ=255)                  aagGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGa                                                                                                                         <  2:1025465/151‑1 (MQ=255)                    ggggCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACg                                                                                                                       <  2:389320/151‑1 (MQ=255)                      ggCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCTGGAGTTCACAGTTTCACCTGGGACGGt                                                                                                                     <  2:286550/151‑1 (MQ=255)                       gCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTa                                                                                                                    <  1:699778/151‑1 (MQ=255)                          gtgACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTAc                                                                                                                   <  2:1161527/149‑1 (MQ=255)                          gtgACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACg                                                                                                                  <  2:1088946/150‑1 (MQ=255)                           tgACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGAGCGCAACATTGATATTGGTTACCTGACTGCCGGAGGTCAAAGCTTCACCTGGGACGGCACgat                                                                                                                >  2:924425/1‑149 (MQ=255)                            gaccacgaccacGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCATCATTGATAGTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTg                                                                                                               <  2:638814/151‑1 (MQ=255)                            gaccacgaccacGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGtt                                                                                                                <  1:191703/150‑1 (MQ=255)                            gaccacgaccacGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTg                                                                                                               <  2:534390/151‑1 (MQ=255)                              ccacgaccacgCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGAc                                                                                                             >  1:1220282/1‑151 (MQ=255)                              ccacgaccacgCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGAc                                                                                                             >  2:189755/1‑151 (MQ=255)                                acgaccacgCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTg                                                                                                           >  2:46309/1‑151 (MQ=255)                                     cacgCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAGATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGgc                                                                                                      <  2:457913/151‑1 (MQ=255)                                      acgCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGgc                                                                                                      >  1:616643/1‑150 (MQ=255)                                            tttGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTg                                                                                               >  2:378503/1‑151 (MQ=255)                                              tGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTgc                                                                                              <  1:711273/150‑1 (MQ=255)                                                      aGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACgg                                                                                     <  1:992317/151‑1 (MQ=255)                                                          gCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGtt                                                                                   <  1:295104/149‑1 (MQ=255)                                                            aataggaggCACACAAAGTTAGGGCCACCAGCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCtt                                                                                >  2:80607/4‑150 (MQ=255)                                                               aGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACaa                                                                            <  1:156222/151‑1 (MQ=255)                                                                    gcAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAg                                                                       <  2:1101891/151‑1 (MQ=255)                                                                    gcAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAg                                                                       <  2:171466/151‑1 (MQ=255)                                                                      aGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCg                                                                     <  1:464244/151‑1 (MQ=255)                                                                      aGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCg                                                                     >  2:386705/1‑151 (MQ=255)                                                                        aCAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGAt                                                                   <  1:722770/151‑1 (MQ=255)                                                                         cAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGAtt                                                                  >  2:649988/1‑151 (MQ=255)                                                                          aaaGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTa                                                                 <  1:164129/151‑1 (MQ=255)                                                                          aaaGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCACACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGa                                                                    >  2:926780/1‑148 (MQ=255)                                                                            aGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAgc                                                               <  1:156088/151‑1 (MQ=255)                                                                             gTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAgcg                                                              <  1:1075720/151‑1 (MQ=255)                                                                               tACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAgcgc                                                             <  2:990334/150‑1 (MQ=255)                                                                                aCGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCa                                                           <  1:1138836/151‑1 (MQ=255)                                                                                 cGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAg                                                          <  2:1122006/151‑1 (MQ=255)                                                                                    ccaccaTCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTaa                                                       <  1:147830/151‑1 (MQ=255)                                                                                     caccaTCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAAc                                                      >  2:664093/1‑151 (MQ=255)                                                                                           cACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACggtggt                                                >  1:496285/1‑151 (MQ=255)                                                                                            aCCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTa                                               <  1:864093/151‑1 (MQ=255)                                                                                              cGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTac                                              >  1:227423/1‑150 (MQ=255)                                                                                                aTAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTAcaca                                           <  1:1183227/151‑1 (MQ=255)                                                                                                  aaaaaTGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAAc                                         <  1:563546/151‑1 (MQ=255)                                                                                                   aaaaTGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAAc                                         >  1:719724/1‑150 (MQ=255)                                                                                                   aaaaTGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACt                                        >  1:445060/1‑151 (MQ=255)                                                                                                     aaTGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTgg                                      <  1:1202/151‑1 (MQ=255)                                                                                                           gcgGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGccc                                >  2:1081763/1‑151 (MQ=255)                                                                                                            cgGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCCCCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGc                                  >  2:135384/1‑148 (MQ=255)                                                                                                            cgGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCa                               <  1:46307/151‑1 (MQ=255)                                                                                                            aggTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGccc                                >  2:1135882/2‑150 (MQ=255)                                                                                                             ggTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCa                               <  1:473376/150‑1 (MQ=255)                                                                                                                tgtgCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTgc                                                                                              >  1:459821/1‑84 (MQ=255)                                                                                                                tgtgCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTgc                                                                                              <  2:459808/84‑1 (MQ=255)                                                                                                                tgtgCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCg                           >  2:1227677/1‑151 (MQ=255)                                                                                                                 gtgCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCGCCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCg                           <  2:1211996/150‑1 (MQ=255)                                                                                                                    cgcACGATTGATATTGGTGAACTAACTGCCGGAGTTCGCAATGTCACCTGGGAGGGTAGGTTGAAGGATAGCAGAACTGCGCCGAACGGTTATTACAGGGTGGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTg                        <  2:603910/150‑1 (MQ=255)                                                                                                                     gcACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCa                      <  2:1210767/151‑1 (MQ=255)                                                                                                                      cACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGc                       >  1:528975/1‑149 (MQ=255)                                                                                                                      cACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAg                     <  1:485135/151‑1 (MQ=255)                                                                                                                      cACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAg                     <  1:89675/151‑1 (MQ=255)                                                                                                                       aCCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGt                    >  1:552654/1‑151 (MQ=255)                                                                                                                        ccATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGtt                   >  1:712360/1‑151 (MQ=255)                                                                                                                            tGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGTTTGc                >  2:959502/1‑150 (MQ=255)                                                                                                                             gATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGTTTGctc              >  1:507138/1‑151 (MQ=255)                                                                                                                             gATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGTTTGctc              <  2:925809/151‑1 (MQ=255)                                                                                                                               tatTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGTTTGCTCTg            >  1:489074/1‑151 (MQ=255)                                                                                                                               tatTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGTTTGCTCTg            >  1:283954/1‑151 (MQ=255)                                                                                                                                 ttGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGTTTGCTCTgg           <  2:496268/150‑1 (MQ=255)                                                                                                                                       aaCTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGTTTGCTCTGGTGCAggg    <  1:204803/151‑1 (MQ=255)                                                                                                                                         cTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGTTTGCTCTGGTGCAGGgtg  >  1:512001/1‑151 (MQ=255)                                                                                                                                              |                                                                                                                                                  GGGAACCGGCAGTGAAGAAGGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACCGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGTTTGCTCTGGTGCAGGGTG  >  NC_000913/1132180‑1132466

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑